data_5L4E # _model_server_result.job_id KdWuYYavpvxTsi6K3VcB-w _model_server_result.datetime_utc '2025-01-22 07:02:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5L4E # _exptl.entry_id 5L4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.88 _cell.angle_gamma 90 _cell.entry_id 5L4E _cell.length_a 182.025 _cell.length_b 134.581 _cell.length_c 159.018 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 33 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 33 B CYS 33 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 C SG CYS 33 C CYS 33 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 D SG CYS 33 D CYS 33 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 E SG CYS 33 E CYS 33 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 83 n n C1 H11 D12 sing 84 n n C1 H12 D12 sing 85 n n C1 H13 D12 sing 86 n n C2 C3 D12 sing 87 n n C2 H21 D12 sing 88 n n C2 H22 D12 sing 89 n n C3 C4 D12 sing 90 n n C3 H31 D12 sing 91 n n C3 H32 D12 sing 92 n n C4 C5 D12 sing 93 n n C4 H41 D12 sing 94 n n C4 H42 D12 sing 95 n n C5 C6 D12 sing 96 n n C5 H51 D12 sing 97 n n C5 H52 D12 sing 98 n n C6 C7 D12 sing 99 n n C6 H61 D12 sing 100 n n C6 H62 D12 sing 101 n n C7 C8 D12 sing 102 n n C7 H71 D12 sing 103 n n C7 H72 D12 sing 104 n n C8 C9 D12 sing 105 n n C8 H81 D12 sing 106 n n C8 H82 D12 sing 107 n n C9 C10 D12 sing 108 n n C9 H91 D12 sing 109 n n C9 H92 D12 sing 110 n n C10 C11 D12 sing 111 n n C10 H101 D12 sing 112 n n C10 H102 D12 sing 113 n n C11 C12 D12 sing 114 n n C11 H111 D12 sing 115 n n C11 H112 D12 sing 116 n n C12 H121 D12 sing 117 n n C12 H122 D12 sing 118 n n C12 H123 D12 sing 119 n n # _atom_sites.entry_id 5L4E _atom_sites.fract_transf_matrix[1][1] 0.005494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001156 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 D12 A 1 401 318 D12 LMT . G 3 CL A 1 402 319 CL CL . H 3 CL B 1 401 318 CL CL . I 3 CL C 1 401 318 CL CL . J 3 CL D 1 401 318 CL CL . K 4 EDP D 1 402 1 EDP EDP . L 3 CL E 1 401 318 CL CL . M 5 HOH A 1 501 328 HOH HOH . M 5 HOH A 2 502 329 HOH HOH . M 5 HOH A 3 503 337 HOH HOH . M 5 HOH A 4 504 322 HOH HOH . M 5 HOH A 5 505 341 HOH HOH . M 5 HOH A 6 506 334 HOH HOH . N 5 HOH B 1 501 341 HOH HOH . N 5 HOH B 2 502 319 HOH HOH . N 5 HOH B 3 503 339 HOH HOH . N 5 HOH B 4 504 335 HOH HOH . O 5 HOH C 1 501 324 HOH HOH . O 5 HOH C 2 502 334 HOH HOH . P 5 HOH D 1 501 332 HOH HOH . P 5 HOH D 2 502 319 HOH HOH . P 5 HOH D 3 503 323 HOH HOH . P 5 HOH D 4 504 331 HOH HOH . P 5 HOH D 5 505 333 HOH HOH . Q 5 HOH E 1 501 322 HOH HOH . Q 5 HOH E 2 502 332 HOH HOH . Q 5 HOH E 3 503 327 HOH HOH . Q 5 HOH E 4 504 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . F 2 53.478 -27.655 38.997 1 81.69 ? C1 D12 401 A 1 HETATM 2 C C2 D12 . . . F 2 53.841 -26.618 40.044 1 80.75 ? C2 D12 401 A 1 HETATM 3 C C3 D12 . . . F 2 55.025 -27.195 40.747 1 84.25 ? C3 D12 401 A 1 HETATM 4 C C4 D12 . . . F 2 55.358 -26.399 41.992 1 87.32 ? C4 D12 401 A 1 HETATM 5 C C5 D12 . . . F 2 56.359 -27.17 42.838 1 86.04 ? C5 D12 401 A 1 HETATM 6 C C6 D12 . . . F 2 56.685 -26.3 44.019 1 84.42 ? C6 D12 401 A 1 HETATM 7 C C7 D12 . . . F 2 57.441 -27.131 45.046 1 83.95 ? C7 D12 401 A 1 HETATM 8 C C8 D12 . . . F 2 57.867 -26.285 46.26 1 82.3 ? C8 D12 401 A 1 HETATM 9 C C9 D12 . . . F 2 58.505 -27.19 47.3 1 79.63 ? C9 D12 401 A 1 HETATM 10 C C10 D12 . . . F 2 59.083 -26.307 48.367 1 79.67 ? C10 D12 401 A 1 HETATM 11 C C11 D12 . . . F 2 60.067 -27.191 49.096 1 84.1 ? C11 D12 401 A 1 HETATM 12 C C12 D12 . . . F 2 60.273 -26.666 50.51 1 88.12 ? C12 D12 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #