data_5L4F # _model_server_result.job_id 1JkMraIOGqnpq7gkLNAxXg _model_server_result.datetime_utc '2024-10-14 04:25:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5L4F # _exptl.entry_id 5L4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L4F _cell.length_a 43.156 _cell.length_b 85.71 _cell.length_c 64.982 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_955 -x+4,-y,z -1 0 0 0 -1 0 0 0 1 172.624 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 D NA NA . A NA 202 1_555 F O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc3 D NA NA . A NA 202 1_555 F O HOH . A HOH 309 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 D NA NA . A NA 202 1_555 F O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 D NA NA . A NA 202 1_555 F O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L4F _atom_sites.fract_transf_matrix[1][1] 0.023172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6J1 A 1 201 1 6J1 DPC . D 3 NA A 1 202 1 NA NA . E 2 6J1 B 1 201 2 6J1 DPC . F 4 HOH A 1 301 88 HOH HOH . F 4 HOH A 2 302 46 HOH HOH . F 4 HOH A 3 303 106 HOH HOH . F 4 HOH A 4 304 208 HOH HOH . F 4 HOH A 5 305 139 HOH HOH . F 4 HOH A 6 306 65 HOH HOH . F 4 HOH A 7 307 56 HOH HOH . F 4 HOH A 8 308 178 HOH HOH . F 4 HOH A 9 309 206 HOH HOH . F 4 HOH A 10 310 80 HOH HOH . F 4 HOH A 11 311 203 HOH HOH . F 4 HOH A 12 312 179 HOH HOH . F 4 HOH A 13 313 43 HOH HOH . F 4 HOH A 14 314 155 HOH HOH . F 4 HOH A 15 315 70 HOH HOH . F 4 HOH A 16 316 45 HOH HOH . F 4 HOH A 17 317 146 HOH HOH . F 4 HOH A 18 318 72 HOH HOH . F 4 HOH A 19 319 60 HOH HOH . F 4 HOH A 20 320 82 HOH HOH . F 4 HOH A 21 321 204 HOH HOH . F 4 HOH A 22 322 63 HOH HOH . F 4 HOH A 23 323 40 HOH HOH . F 4 HOH A 24 324 54 HOH HOH . F 4 HOH A 25 325 141 HOH HOH . F 4 HOH A 26 326 130 HOH HOH . F 4 HOH A 27 327 55 HOH HOH . F 4 HOH A 28 328 205 HOH HOH . F 4 HOH A 29 329 67 HOH HOH . F 4 HOH A 30 330 105 HOH HOH . F 4 HOH A 31 331 118 HOH HOH . F 4 HOH A 32 332 84 HOH HOH . F 4 HOH A 33 333 42 HOH HOH . F 4 HOH A 34 334 71 HOH HOH . F 4 HOH A 35 335 169 HOH HOH . F 4 HOH A 36 336 41 HOH HOH . F 4 HOH A 37 337 115 HOH HOH . F 4 HOH A 38 338 132 HOH HOH . F 4 HOH A 39 339 47 HOH HOH . F 4 HOH A 40 340 102 HOH HOH . F 4 HOH A 41 341 109 HOH HOH . F 4 HOH A 42 342 92 HOH HOH . F 4 HOH A 43 343 135 HOH HOH . F 4 HOH A 44 344 83 HOH HOH . F 4 HOH A 45 345 161 HOH HOH . F 4 HOH A 46 346 49 HOH HOH . F 4 HOH A 47 347 152 HOH HOH . F 4 HOH A 48 348 74 HOH HOH . F 4 HOH A 49 349 127 HOH HOH . F 4 HOH A 50 350 125 HOH HOH . F 4 HOH A 51 351 133 HOH HOH . F 4 HOH A 52 352 66 HOH HOH . F 4 HOH A 53 353 156 HOH HOH . F 4 HOH A 54 354 201 HOH HOH . F 4 HOH A 55 355 50 HOH HOH . F 4 HOH A 56 356 142 HOH HOH . F 4 HOH A 57 357 52 HOH HOH . F 4 HOH A 58 358 48 HOH HOH . F 4 HOH A 59 359 59 HOH HOH . F 4 HOH A 60 360 101 HOH HOH . F 4 HOH A 61 361 53 HOH HOH . F 4 HOH A 62 362 190 HOH HOH . F 4 HOH A 63 363 75 HOH HOH . F 4 HOH A 64 364 173 HOH HOH . F 4 HOH A 65 365 64 HOH HOH . F 4 HOH A 66 366 57 HOH HOH . F 4 HOH A 67 367 95 HOH HOH . F 4 HOH A 68 368 207 HOH HOH . F 4 HOH A 69 369 111 HOH HOH . F 4 HOH A 70 370 140 HOH HOH . F 4 HOH A 71 371 116 HOH HOH . F 4 HOH A 72 372 68 HOH HOH . F 4 HOH A 73 373 104 HOH HOH . F 4 HOH A 74 374 94 HOH HOH . F 4 HOH A 75 375 168 HOH HOH . F 4 HOH A 76 376 58 HOH HOH . F 4 HOH A 77 377 61 HOH HOH . F 4 HOH A 78 378 200 HOH HOH . F 4 HOH A 79 379 117 HOH HOH . F 4 HOH A 80 380 73 HOH HOH . F 4 HOH A 81 381 79 HOH HOH . F 4 HOH A 82 382 154 HOH HOH . F 4 HOH A 83 383 85 HOH HOH . F 4 HOH A 84 384 134 HOH HOH . F 4 HOH A 85 385 175 HOH HOH . F 4 HOH A 86 386 78 HOH HOH . F 4 HOH A 87 387 76 HOH HOH . F 4 HOH A 88 388 98 HOH HOH . F 4 HOH A 89 389 62 HOH HOH . F 4 HOH A 90 390 209 HOH HOH . F 4 HOH A 91 391 186 HOH HOH . F 4 HOH A 92 392 191 HOH HOH . F 4 HOH A 93 393 164 HOH HOH . F 4 HOH A 94 394 189 HOH HOH . F 4 HOH A 95 395 137 HOH HOH . F 4 HOH A 96 396 119 HOH HOH . F 4 HOH A 97 397 128 HOH HOH . F 4 HOH A 98 398 199 HOH HOH . F 4 HOH A 99 399 121 HOH HOH . F 4 HOH A 100 400 131 HOH HOH . F 4 HOH A 101 401 180 HOH HOH . F 4 HOH A 102 402 160 HOH HOH . F 4 HOH A 103 403 159 HOH HOH . F 4 HOH A 104 404 193 HOH HOH . F 4 HOH A 105 405 183 HOH HOH . F 4 HOH A 106 406 69 HOH HOH . F 4 HOH A 107 407 162 HOH HOH . F 4 HOH A 108 408 184 HOH HOH . F 4 HOH A 109 409 177 HOH HOH . F 4 HOH A 110 410 81 HOH HOH . F 4 HOH A 111 411 77 HOH HOH . F 4 HOH A 112 412 107 HOH HOH . F 4 HOH A 113 413 96 HOH HOH . F 4 HOH A 114 414 187 HOH HOH . F 4 HOH A 115 415 158 HOH HOH . G 4 HOH B 1 301 31 HOH HOH . G 4 HOH B 2 302 153 HOH HOH . G 4 HOH B 3 303 103 HOH HOH . G 4 HOH B 4 304 99 HOH HOH . G 4 HOH B 5 305 196 HOH HOH . G 4 HOH B 6 306 143 HOH HOH . G 4 HOH B 7 307 202 HOH HOH . G 4 HOH B 8 308 167 HOH HOH . G 4 HOH B 9 309 151 HOH HOH . G 4 HOH B 10 310 108 HOH HOH . G 4 HOH B 11 311 5 HOH HOH . G 4 HOH B 12 312 4 HOH HOH . G 4 HOH B 13 313 157 HOH HOH . G 4 HOH B 14 314 194 HOH HOH . G 4 HOH B 15 315 28 HOH HOH . G 4 HOH B 16 316 16 HOH HOH . G 4 HOH B 17 317 182 HOH HOH . G 4 HOH B 18 318 93 HOH HOH . G 4 HOH B 19 319 144 HOH HOH . G 4 HOH B 20 320 3 HOH HOH . G 4 HOH B 21 321 197 HOH HOH . G 4 HOH B 22 322 198 HOH HOH . G 4 HOH B 23 323 124 HOH HOH . G 4 HOH B 24 324 8 HOH HOH . G 4 HOH B 25 325 6 HOH HOH . G 4 HOH B 26 326 170 HOH HOH . G 4 HOH B 27 327 24 HOH HOH . G 4 HOH B 28 328 165 HOH HOH . G 4 HOH B 29 329 22 HOH HOH . G 4 HOH B 30 330 13 HOH HOH . G 4 HOH B 31 331 33 HOH HOH . G 4 HOH B 32 332 30 HOH HOH . G 4 HOH B 33 333 38 HOH HOH . G 4 HOH B 34 334 2 HOH HOH . G 4 HOH B 35 335 39 HOH HOH . G 4 HOH B 36 336 7 HOH HOH . G 4 HOH B 37 337 21 HOH HOH . G 4 HOH B 38 338 171 HOH HOH . G 4 HOH B 39 339 14 HOH HOH . G 4 HOH B 40 340 9 HOH HOH . G 4 HOH B 41 341 129 HOH HOH . G 4 HOH B 42 342 27 HOH HOH . G 4 HOH B 43 343 29 HOH HOH . G 4 HOH B 44 344 34 HOH HOH . G 4 HOH B 45 345 163 HOH HOH . G 4 HOH B 46 346 1 HOH HOH . G 4 HOH B 47 347 51 HOH HOH . G 4 HOH B 48 348 26 HOH HOH . G 4 HOH B 49 349 172 HOH HOH . G 4 HOH B 50 350 11 HOH HOH . G 4 HOH B 51 351 145 HOH HOH . G 4 HOH B 52 352 148 HOH HOH . G 4 HOH B 53 353 12 HOH HOH . G 4 HOH B 54 354 136 HOH HOH . G 4 HOH B 55 355 166 HOH HOH . G 4 HOH B 56 356 18 HOH HOH . G 4 HOH B 57 357 35 HOH HOH . G 4 HOH B 58 358 110 HOH HOH . G 4 HOH B 59 359 20 HOH HOH . G 4 HOH B 60 360 23 HOH HOH . G 4 HOH B 61 361 112 HOH HOH . G 4 HOH B 62 362 97 HOH HOH . G 4 HOH B 63 363 100 HOH HOH . G 4 HOH B 64 364 10 HOH HOH . G 4 HOH B 65 365 19 HOH HOH . G 4 HOH B 66 366 25 HOH HOH . G 4 HOH B 67 367 15 HOH HOH . G 4 HOH B 68 368 32 HOH HOH . G 4 HOH B 69 369 90 HOH HOH . G 4 HOH B 70 370 149 HOH HOH . G 4 HOH B 71 371 174 HOH HOH . G 4 HOH B 72 372 114 HOH HOH . G 4 HOH B 73 373 138 HOH HOH . G 4 HOH B 74 374 17 HOH HOH . G 4 HOH B 75 375 195 HOH HOH . G 4 HOH B 76 376 86 HOH HOH . G 4 HOH B 77 377 37 HOH HOH . G 4 HOH B 78 378 120 HOH HOH . G 4 HOH B 79 379 147 HOH HOH . G 4 HOH B 80 380 36 HOH HOH . G 4 HOH B 81 381 192 HOH HOH . G 4 HOH B 82 382 44 HOH HOH . G 4 HOH B 83 383 89 HOH HOH . G 4 HOH B 84 384 91 HOH HOH . G 4 HOH B 85 385 188 HOH HOH . G 4 HOH B 86 386 123 HOH HOH . G 4 HOH B 87 387 181 HOH HOH . G 4 HOH B 88 388 150 HOH HOH . G 4 HOH B 89 389 122 HOH HOH . G 4 HOH B 90 390 87 HOH HOH . G 4 HOH B 91 391 126 HOH HOH . G 4 HOH B 92 392 113 HOH HOH . G 4 HOH B 93 393 185 HOH HOH . G 4 HOH B 94 394 176 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 109.066 _atom_site.Cartn_y 17.527 _atom_site.Cartn_z 69.322 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 619 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #