data_5L4G # _model_server_result.job_id XgD8P4hWtVTNChWZ1DELOg _model_server_result.datetime_utc '2024-10-18 16:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":401}' # _entry.id 5L4G # _exptl.entry_id 5L4G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L4G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 21 IA N N ? 21 KA N N ? 21 MA N N ? 21 OA N N ? 21 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 CA OG1 THR 223 H THR 223 1_555 JA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 IA O2G ATP . H ATP 501 1_555 JA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc3 IA O1B ATP . H ATP 501 1_555 JA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 DA OG1 THR 233 I THR 233 1_555 LA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc5 KA O1G ATP . I ATP 501 1_555 LA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc6 KA O2B ATP . I ATP 501 1_555 LA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc7 EA OG1 THR 213 K THR 213 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc8 MA O2G ATP . K ATP 501 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc9 MA O2B ATP . K ATP 501 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc10 FA OG1 THR 181 L THR 181 1_555 PA MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc11 OA O2G ATP . L ATP 401 1_555 PA MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc12 OA O2B ATP . L ATP 401 1_555 PA MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc13 GA OG1 THR 234 M THR 234 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 QA O2G ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc15 QA O2B ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc16 QA O3B ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 5L4G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 21 ATP H 1 501 439 ATP ATP . JA 22 MG H 1 502 601 MG MG . KA 21 ATP I 1 501 439 ATP ATP . LA 22 MG I 1 502 601 MG MG . MA 21 ATP K 1 501 439 ATP ATP . NA 22 MG K 1 502 601 MG MG . OA 21 ATP L 1 401 439 ATP ATP . PA 22 MG L 1 402 601 MG MG . QA 21 ATP M 1 501 439 ATP ATP . RA 22 MG M 1 502 601 MG MG . SA 23 ADP J 1 501 439 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . OA 21 165.908 271.376 293.15 1 99.8 ? PG ATP 401 L 1 HETATM 2 O O1G ATP . . . OA 21 165.918 270.131 292.297 1 110.77 ? O1G ATP 401 L 1 HETATM 3 O O2G ATP . . . OA 21 164.536 271.971 293.303 1 59.3 ? O2G ATP 401 L 1 HETATM 4 O O3G ATP . . . OA 21 167.002 272.359 292.813 1 100.72 ? O3G ATP 401 L 1 HETATM 5 P PB ATP . . . OA 21 166.086 271.691 295.992 1 82.58 ? PB ATP 401 L 1 HETATM 6 O O1B ATP . . . OA 21 167.164 272.746 296.015 1 84.09 ? O1B ATP 401 L 1 HETATM 7 O O2B ATP . . . OA 21 164.629 272.063 296.181 1 90.04 ? O2B ATP 401 L 1 HETATM 8 O O3B ATP . . . OA 21 166.262 270.846 294.629 1 81.52 ? O3B ATP 401 L 1 HETATM 9 P PA ATP . . . OA 21 165.467 270.053 298.206 1 122.76 ? PA ATP 401 L 1 HETATM 10 O O1A ATP . . . OA 21 164.238 269.611 297.452 1 113.16 ? O1A ATP 401 L 1 HETATM 11 O O2A ATP . . . OA 21 165.308 271.104 299.274 1 125.56 ? O2A ATP 401 L 1 HETATM 12 O O3A ATP . . . OA 21 166.507 270.585 297.095 1 91.66 ? O3A ATP 401 L 1 HETATM 13 O O5' ATP . . . OA 21 166.132 268.742 298.877 1 131.4 ? O5' ATP 401 L 1 HETATM 14 C C5' ATP . . . OA 21 165.374 267.54 299.049 1 145.92 ? C5' ATP 401 L 1 HETATM 15 C C4' ATP . . . OA 21 165.603 266.937 300.426 1 129.58 ? C4' ATP 401 L 1 HETATM 16 O O4' ATP . . . OA 21 166.989 266.952 300.76 1 107.43 ? O4' ATP 401 L 1 HETATM 17 C C3' ATP . . . OA 21 164.87 267.715 301.507 1 136.97 ? C3' ATP 401 L 1 HETATM 18 O O3' ATP . . . OA 21 163.609 267.118 301.826 1 155.07 ? O3' ATP 401 L 1 HETATM 19 C C2' ATP . . . OA 21 165.805 267.695 302.696 1 131.45 ? C2' ATP 401 L 1 HETATM 20 O O2' ATP . . . OA 21 165.442 266.708 303.669 1 156.48 ? O2' ATP 401 L 1 HETATM 21 C C1' ATP . . . OA 21 167.163 267.364 302.116 1 103.87 ? C1' ATP 401 L 1 HETATM 22 N N9 ATP . . . OA 21 168.026 268.563 302.12 1 69.04 ? N9 ATP 401 L 1 HETATM 23 C C8 ATP . . . OA 21 168.446 269.207 301.016 1 67.97 ? C8 ATP 401 L 1 HETATM 24 N N7 ATP . . . OA 21 169.228 270.256 301.373 1 68.17 ? N7 ATP 401 L 1 HETATM 25 C C5 ATP . . . OA 21 169.32 270.278 302.716 1 69.38 ? C5 ATP 401 L 1 HETATM 26 C C6 ATP . . . OA 21 169.993 271.122 303.729 1 70.21 ? C6 ATP 401 L 1 HETATM 27 N N6 ATP . . . OA 21 170.747 272.184 303.338 1 69.76 ? N6 ATP 401 L 1 HETATM 28 N N1 ATP . . . OA 21 169.817 270.799 305.037 1 71.44 ? N1 ATP 401 L 1 HETATM 29 C C2 ATP . . . OA 21 169.072 269.749 305.439 1 71.94 ? C2 ATP 401 L 1 HETATM 30 N N3 ATP . . . OA 21 168.44 268.95 304.552 1 71.21 ? N3 ATP 401 L 1 HETATM 31 C C4 ATP . . . OA 21 168.523 269.155 303.211 1 69.96 ? C4 ATP 401 L 1 HETATM 32 H "H5'1" ATP . . . OA 21 164.431 267.735 298.934 1 140.33 ? "H5'1" ATP 401 L 1 HETATM 33 H "H5'2" ATP . . . OA 21 165.629 266.897 298.369 1 140.33 ? "H5'2" ATP 401 L 1 HETATM 34 H H4' ATP . . . OA 21 165.275 266.024 300.424 1 122.49 ? H4' ATP 401 L 1 HETATM 35 H H3' ATP . . . OA 21 164.746 268.631 301.213 1 129.42 ? H3' ATP 401 L 1 HETATM 36 H HO3' ATP . . . OA 21 163.23 267.568 302.425 1 147.37 ? HO3' ATP 401 L 1 HETATM 37 H H2' ATP . . . OA 21 165.833 268.578 303.098 1 122.56 ? H2' ATP 401 L 1 HETATM 38 H HO2' ATP . . . OA 21 164.702 266.369 303.462 1 146.44 ? HO2' ATP 401 L 1 HETATM 39 H H1' ATP . . . OA 21 167.569 266.653 302.636 1 94.96 ? H1' ATP 401 L 1 HETATM 40 H H8 ATP . . . OA 21 168.22 268.963 300.105 1 60.29 ? H8 ATP 401 L 1 HETATM 41 H HN61 ATP . . . OA 21 171.135 272.675 303.927 1 60.29 ? HN61 ATP 401 L 1 HETATM 42 H HN62 ATP . . . OA 21 170.834 272.365 302.502 1 60.29 ? HN62 ATP 401 L 1 HETATM 43 H H2 ATP . . . OA 21 168.987 269.564 306.387 1 60.29 ? H2 ATP 401 L 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 466 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #