data_5L4G # _model_server_result.job_id ikOyMic6xXfWblB8SOLpmA _model_server_result.datetime_utc '2024-10-18 16:19:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":501}' # _entry.id 5L4G # _exptl.entry_id 5L4G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L4G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 21 IA N N ? 21 KA N N ? 21 MA N N ? 21 OA N N ? 21 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 CA OG1 THR 223 H THR 223 1_555 JA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 IA O2G ATP . H ATP 501 1_555 JA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc3 IA O1B ATP . H ATP 501 1_555 JA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 DA OG1 THR 233 I THR 233 1_555 LA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc5 KA O1G ATP . I ATP 501 1_555 LA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc6 KA O2B ATP . I ATP 501 1_555 LA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc7 EA OG1 THR 213 K THR 213 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc8 MA O2G ATP . K ATP 501 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc9 MA O2B ATP . K ATP 501 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc10 FA OG1 THR 181 L THR 181 1_555 PA MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc11 OA O2G ATP . L ATP 401 1_555 PA MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc12 OA O2B ATP . L ATP 401 1_555 PA MG MG . L MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc13 GA OG1 THR 234 M THR 234 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 QA O2G ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc15 QA O2B ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc16 QA O3B ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 5L4G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 21 ATP H 1 501 439 ATP ATP . JA 22 MG H 1 502 601 MG MG . KA 21 ATP I 1 501 439 ATP ATP . LA 22 MG I 1 502 601 MG MG . MA 21 ATP K 1 501 439 ATP ATP . NA 22 MG K 1 502 601 MG MG . OA 21 ATP L 1 401 439 ATP ATP . PA 22 MG L 1 402 601 MG MG . QA 21 ATP M 1 501 439 ATP ATP . RA 22 MG M 1 502 601 MG MG . SA 23 ADP J 1 501 439 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . KA 21 169.567 279.553 234.343 1 93.39 ? PG ATP 501 I 1 HETATM 2 O O1G ATP . . . KA 21 168.252 278.824 234.452 1 96.46 ? O1G ATP 501 I 1 HETATM 3 O O2G ATP . . . KA 21 169.608 280.884 235.074 1 65.48 ? O2G ATP 501 I 1 HETATM 4 O O3G ATP . . . KA 21 170.74 278.638 234.614 1 93.84 ? O3G ATP 501 I 1 HETATM 5 P PB ATP . . . KA 21 169.046 279.177 231.518 1 64.09 ? PB ATP 501 I 1 HETATM 6 O O1B ATP . . . KA 21 170.15 278.373 230.87 1 72.88 ? O1B ATP 501 I 1 HETATM 7 O O2B ATP . . . KA 21 167.722 278.529 231.865 1 63 ? O2B ATP 501 I 1 HETATM 8 O O3B ATP . . . KA 21 169.678 279.973 232.783 1 73.45 ? O3B ATP 501 I 1 HETATM 9 P PA ATP . . . KA 21 167.449 280.535 229.585 1 107.84 ? PA ATP 501 I 1 HETATM 10 O O1A ATP . . . KA 21 167.398 279.333 228.682 1 108.22 ? O1A ATP 501 I 1 HETATM 11 O O2A ATP . . . KA 21 166.224 280.875 230.399 1 107.72 ? O2A ATP 501 I 1 HETATM 12 O O3A ATP . . . KA 21 168.729 280.43 230.555 1 63.28 ? O3A ATP 501 I 1 HETATM 13 O O5' ATP . . . KA 21 167.891 281.801 228.697 1 107.34 ? O5' ATP 501 I 1 HETATM 14 C C5' ATP . . . KA 21 167.227 283.058 228.77 1 119.3 ? C5' ATP 501 I 1 HETATM 15 C C4' ATP . . . KA 21 167.046 283.593 227.361 1 106.5 ? C4' ATP 501 I 1 HETATM 16 O O4' ATP . . . KA 21 168.26 283.513 226.61 1 85.46 ? O4' ATP 501 I 1 HETATM 17 C C3' ATP . . . KA 21 166.024 282.758 226.612 1 114.51 ? C3' ATP 501 I 1 HETATM 18 O O3' ATP . . . KA 21 164.694 283.268 226.749 1 123.48 ? O3' ATP 501 I 1 HETATM 19 C C2' ATP . . . KA 21 166.497 282.796 225.174 1 111.9 ? C2' ATP 501 I 1 HETATM 20 O O2' ATP . . . KA 21 165.816 283.802 224.412 1 130.03 ? O2' ATP 501 I 1 HETATM 21 C C1' ATP . . . KA 21 167.979 283.122 225.259 1 86.1 ? C1' ATP 501 I 1 HETATM 22 N N9 ATP . . . KA 21 168.784 281.929 224.882 1 60.8 ? N9 ATP 501 I 1 HETATM 23 C C8 ATP . . . KA 21 169.594 281.237 225.71 1 62.19 ? C8 ATP 501 I 1 HETATM 24 N N7 ATP . . . KA 21 170.176 280.216 225.022 1 60.02 ? N7 ATP 501 I 1 HETATM 25 C C5 ATP . . . KA 21 169.744 280.242 223.757 1 60.57 ? C5 ATP 501 I 1 HETATM 26 C C6 ATP . . . KA 21 169.977 279.446 222.545 1 60.76 ? C6 ATP 501 I 1 HETATM 27 N N6 ATP . . . KA 21 170.813 278.388 222.566 1 60.33 ? N6 ATP 501 I 1 HETATM 28 N N1 ATP . . . KA 21 169.319 279.813 221.432 1 61.39 ? N1 ATP 501 I 1 HETATM 29 C C2 ATP . . . KA 21 168.48 280.859 221.389 1 64.01 ? C2 ATP 501 I 1 HETATM 30 N N3 ATP . . . KA 21 168.241 281.613 222.475 1 61.69 ? N3 ATP 501 I 1 HETATM 31 C C4 ATP . . . KA 21 168.83 281.372 223.665 1 61.08 ? C4 ATP 501 I 1 HETATM 32 H "H5'1" ATP . . . KA 21 166.363 282.952 229.198 1 119.61 ? "H5'1" ATP 501 I 1 HETATM 33 H "H5'2" ATP . . . KA 21 167.754 283.68 229.295 1 119.61 ? "H5'2" ATP 501 I 1 HETATM 34 H H4' ATP . . . KA 21 166.737 284.511 227.405 1 106.11 ? H4' ATP 501 I 1 HETATM 35 H H3' ATP . . . KA 21 166.066 281.844 226.934 1 113.98 ? H3' ATP 501 I 1 HETATM 36 H HO3' ATP . . . KA 21 164.489 283.705 226.061 1 122.62 ? HO3' ATP 501 I 1 HETATM 37 H H2' ATP . . . KA 21 166.381 281.922 224.771 1 110.9 ? H2' ATP 501 I 1 HETATM 38 H HO2' ATP . . . KA 21 165.887 283.629 223.593 1 128.31 ? HO2' ATP 501 I 1 HETATM 39 H H1' ATP . . . KA 21 168.172 283.856 224.655 1 85.23 ? H1' ATP 501 I 1 HETATM 40 H H8 ATP . . . KA 21 169.746 281.441 226.646 1 62.32 ? H8 ATP 501 I 1 HETATM 41 H HN61 ATP . . . KA 21 171.218 278.174 223.294 1 60.29 ? HN61 ATP 501 I 1 HETATM 42 H HN62 ATP . . . KA 21 170.941 277.926 221.852 1 60.29 ? HN62 ATP 501 I 1 HETATM 43 H H2 ATP . . . KA 21 168.037 281.078 220.554 1 62.45 ? H2 ATP 501 I 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 422 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #