data_5L4H
#
_model_server_result.job_id            ttPUziy-zCskb1iShP433w 
_model_server_result.datetime_utc      '2025-01-22 10:00:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l4h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    5L4H 
#
_exptl.entry_id    5L4H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              263.089 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(2-bromoethyl)-5-ethyl-1,3-diazinane-2,4,6-trione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.03 
_cell.angle_gamma         90 
_cell.entry_id            5L4H 
_cell.length_a            177.145 
_cell.length_b            127.942 
_cell.length_c            159.7 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L4H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 33 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 B SG CYS 33 B CYS 33 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 C SG CYS 33 C CYS 33 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf4 D SG CYS 33 D CYS 33 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf5 E SG CYS 33 E CYS 33 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C8 H11 Br N2 O3' 
_chem_comp.formula_weight    263.089 
_chem_comp.id                6JW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(2-bromoethyl)-5-ethyl-1,3-diazinane-2,4,6-trione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BR C4 6JW sing 1 n n 
C4 C3 6JW sing 2 n n 
O C5 6JW doub 3 n n 
C C1 6JW sing 4 n n 
C3 C2 6JW sing 5 n n 
C5 C2 6JW sing 6 n n 
C5 N 6JW sing 7 n n 
C1 C2 6JW sing 8 n n 
C2 C7 6JW sing 9 n n 
N C6 6JW sing 10 n n 
C7 O2 6JW doub 11 n n 
C7 N1 6JW sing 12 n n 
C6 N1 6JW sing 13 n n 
C6 O1 6JW doub 14 n n 
C H1 6JW sing 15 n n 
C H2 6JW sing 16 n n 
C H3 6JW sing 17 n n 
N H4 6JW sing 18 n n 
C1 H5 6JW sing 19 n n 
C1 H6 6JW sing 20 n n 
C3 H7 6JW sing 21 n n 
C3 H8 6JW sing 22 n n 
C4 H9 6JW sing 23 n n 
C4 H10 6JW sing 24 n n 
N1 H11 6JW sing 25 n n 
#
_atom_sites.entry_id                     5L4H 
_atom_sites.fract_transf_matrix[1][1]    0.005645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0011 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007816 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00638 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 CL A 1 401 319 CL CL . 
G 2 CL B 1 401 318 CL CL . 
H 2 CL C 1 401 318 CL CL . 
I 3 LMT D 1 401 318 LMT LMT . 
J 2 CL D 1 402 318 CL CL . 
K 2 CL E 1 401 318 CL CL . 
L 4 6JW E 1 402 1 6JW PBB . 
M 5 HOH A 1 501 321 HOH HOH . 
M 5 HOH A 2 502 330 HOH HOH . 
M 5 HOH A 3 503 326 HOH HOH . 
M 5 HOH A 4 504 329 HOH HOH . 
M 5 HOH A 5 505 325 HOH HOH . 
M 5 HOH A 6 506 326 HOH HOH . 
M 5 HOH A 7 507 320 HOH HOH . 
M 5 HOH A 8 508 323 HOH HOH . 
M 5 HOH A 9 509 340 HOH HOH . 
M 5 HOH A 10 510 322 HOH HOH . 
M 5 HOH A 11 511 324 HOH HOH . 
M 5 HOH A 12 512 337 HOH HOH . 
M 5 HOH A 13 513 336 HOH HOH . 
M 5 HOH A 14 514 331 HOH HOH . 
M 5 HOH A 15 515 338 HOH HOH . 
M 5 HOH A 16 516 332 HOH HOH . 
M 5 HOH A 17 517 334 HOH HOH . 
M 5 HOH A 18 518 341 HOH HOH . 
M 5 HOH A 19 519 333 HOH HOH . 
M 5 HOH A 20 520 335 HOH HOH . 
M 5 HOH A 21 521 329 HOH HOH . 
M 5 HOH A 22 522 332 HOH HOH . 
M 5 HOH A 23 523 328 HOH HOH . 
N 5 HOH B 1 501 323 HOH HOH . 
N 5 HOH B 2 502 329 HOH HOH . 
N 5 HOH B 3 503 340 HOH HOH . 
N 5 HOH B 4 504 325 HOH HOH . 
N 5 HOH B 5 505 319 HOH HOH . 
N 5 HOH B 6 506 343 HOH HOH . 
N 5 HOH B 7 507 326 HOH HOH . 
N 5 HOH B 8 508 342 HOH HOH . 
N 5 HOH B 9 509 341 HOH HOH . 
N 5 HOH B 10 510 328 HOH HOH . 
N 5 HOH B 11 511 321 HOH HOH . 
N 5 HOH B 12 512 320 HOH HOH . 
N 5 HOH B 13 513 333 HOH HOH . 
N 5 HOH B 14 514 338 HOH HOH . 
N 5 HOH B 15 515 335 HOH HOH . 
N 5 HOH B 16 516 327 HOH HOH . 
N 5 HOH B 17 517 322 HOH HOH . 
N 5 HOH B 18 518 339 HOH HOH . 
N 5 HOH B 19 519 331 HOH HOH . 
N 5 HOH B 20 520 330 HOH HOH . 
N 5 HOH B 21 521 327 HOH HOH . 
N 5 HOH B 22 522 344 HOH HOH . 
N 5 HOH B 23 523 334 HOH HOH . 
N 5 HOH B 24 524 336 HOH HOH . 
N 5 HOH B 25 525 332 HOH HOH . 
N 5 HOH B 26 526 337 HOH HOH . 
N 5 HOH B 27 527 336 HOH HOH . 
O 5 HOH C 1 501 323 HOH HOH . 
O 5 HOH C 2 502 321 HOH HOH . 
O 5 HOH C 3 503 338 HOH HOH . 
O 5 HOH C 4 504 322 HOH HOH . 
O 5 HOH C 5 505 327 HOH HOH . 
O 5 HOH C 6 506 328 HOH HOH . 
O 5 HOH C 7 507 319 HOH HOH . 
O 5 HOH C 8 508 331 HOH HOH . 
O 5 HOH C 9 509 320 HOH HOH . 
O 5 HOH C 10 510 324 HOH HOH . 
O 5 HOH C 11 511 324 HOH HOH . 
O 5 HOH C 12 512 322 HOH HOH . 
O 5 HOH C 13 513 325 HOH HOH . 
O 5 HOH C 14 514 334 HOH HOH . 
O 5 HOH C 15 515 335 HOH HOH . 
O 5 HOH C 16 516 330 HOH HOH . 
O 5 HOH C 17 517 337 HOH HOH . 
O 5 HOH C 18 518 333 HOH HOH . 
O 5 HOH C 19 519 330 HOH HOH . 
O 5 HOH C 20 520 336 HOH HOH . 
P 5 HOH D 1 501 326 HOH HOH . 
P 5 HOH D 2 502 319 HOH HOH . 
P 5 HOH D 3 503 327 HOH HOH . 
P 5 HOH D 4 504 329 HOH HOH . 
P 5 HOH D 5 505 324 HOH HOH . 
P 5 HOH D 6 506 321 HOH HOH . 
P 5 HOH D 7 507 334 HOH HOH . 
P 5 HOH D 8 508 320 HOH HOH . 
P 5 HOH D 9 509 332 HOH HOH . 
P 5 HOH D 10 510 335 HOH HOH . 
P 5 HOH D 11 511 333 HOH HOH . 
P 5 HOH D 12 512 329 HOH HOH . 
P 5 HOH D 13 513 323 HOH HOH . 
P 5 HOH D 14 514 323 HOH HOH . 
P 5 HOH D 15 515 331 HOH HOH . 
P 5 HOH D 16 516 328 HOH HOH . 
P 5 HOH D 17 517 330 HOH HOH . 
Q 5 HOH E 1 501 327 HOH HOH . 
Q 5 HOH E 2 502 320 HOH HOH . 
Q 5 HOH E 3 503 324 HOH HOH . 
Q 5 HOH E 4 504 325 HOH HOH . 
Q 5 HOH E 5 505 322 HOH HOH . 
Q 5 HOH E 6 506 333 HOH HOH . 
Q 5 HOH E 7 507 326 HOH HOH . 
Q 5 HOH E 8 508 332 HOH HOH . 
Q 5 HOH E 9 509 337 HOH HOH . 
Q 5 HOH E 10 510 338 HOH HOH . 
Q 5 HOH E 11 511 328 HOH HOH . 
Q 5 HOH E 12 512 331 HOH HOH . 
Q 5 HOH E 13 513 319 HOH HOH . 
Q 5 HOH E 14 514 334 HOH HOH . 
Q 5 HOH E 15 515 339 HOH HOH . 
Q 5 HOH E 16 516 335 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 6JW . . . L 4 63.033 -27.268 53.947 1 111.4 ? C 6JW 402 E 1 
HETATM 2 O O 6JW . . . L 4 61.937 -24.79 53.565 1 117.56 ? O 6JW 402 E 1 
HETATM 3 N N 6JW . . . L 4 62.375 -24.047 55.629 1 116.05 ? N 6JW 402 E 1 
HETATM 4 BR BR 6JW . . . L 4 59.073 -25.956 51.665 0.26 114 ? BR 6JW 402 E 1 
HETATM 5 C C1 6JW . . . L 4 62.026 -27.437 55.068 1 113.63 ? C1 6JW 402 E 1 
HETATM 6 C C2 6JW . . . L 4 61.16 -26.186 55.344 1 114.99 ? C2 6JW 402 E 1 
HETATM 7 C C3 6JW . . . L 4 59.795 -26.263 54.623 1 116.35 ? C3 6JW 402 E 1 
HETATM 8 C C4 6JW . . . L 4 59.966 -26.809 53.226 1 116.52 ? C4 6JW 402 E 1 
HETATM 9 C C5 6JW . . . L 4 61.885 -24.987 54.768 1 115.84 ? C5 6JW 402 E 1 
HETATM 10 C C6 6JW . . . L 4 62.213 -24.025 56.987 1 116.1 ? C6 6JW 402 E 1 
HETATM 11 C C7 6JW . . . L 4 60.943 -26.107 56.846 1 115.48 ? C7 6JW 402 E 1 
HETATM 12 O O2 6JW . . . L 4 60.324 -26.969 57.454 1 116.26 ? O2 6JW 402 E 1 
HETATM 13 N N1 6JW . . . L 4 61.492 -25.056 57.527 1 116.02 ? N1 6JW 402 E 1 
HETATM 14 O O1 6JW . . . L 4 62.65 -23.11 57.673 1 115.75 ? O1 6JW 402 E 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    79 
_model_server_stats.query_time_ms           555 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           14 
#