data_5L4J
#
_model_server_result.job_id            O6Xdo_GsM7_zkFVT85Df-A 
_model_server_result.datetime_utc      '2024-11-28 10:03:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5L4J 
#
_exptl.entry_id    5L4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L4J 
_cell.length_a            42.773 
_cell.length_b            86.105 
_cell.length_c            64.605 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_355 -x-2,-y,z -1 0 0 0 -1 0 0 0 1 -85.546 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.075 ? 
metalc ? metalc2 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.078 ? 
metalc ? metalc3 D NA NA . A NA 202 1_555 F O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc4 D NA NA . A NA 202 1_555 F O HOH . A HOH 353 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5L4J 
_atom_sites.fract_transf_matrix[1][1]    0.023379 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011614 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015479 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6JD A 1 201 201 6JD 6JD . 
D 3 NA A 1 202 202 NA NA . 
E 2 6JD B 1 201 201 6JD 6JD . 
F 4 HOH A 1 301 301 HOH HOH . 
F 4 HOH A 2 302 302 HOH HOH . 
F 4 HOH A 3 303 303 HOH HOH . 
F 4 HOH A 4 304 304 HOH HOH . 
F 4 HOH A 5 305 305 HOH HOH . 
F 4 HOH A 6 306 306 HOH HOH . 
F 4 HOH A 7 307 307 HOH HOH . 
F 4 HOH A 8 308 308 HOH HOH . 
F 4 HOH A 9 309 309 HOH HOH . 
F 4 HOH A 10 310 310 HOH HOH . 
F 4 HOH A 11 311 311 HOH HOH . 
F 4 HOH A 12 312 312 HOH HOH . 
F 4 HOH A 13 313 313 HOH HOH . 
F 4 HOH A 14 314 314 HOH HOH . 
F 4 HOH A 15 315 315 HOH HOH . 
F 4 HOH A 16 316 316 HOH HOH . 
F 4 HOH A 17 317 317 HOH HOH . 
F 4 HOH A 18 318 318 HOH HOH . 
F 4 HOH A 19 319 319 HOH HOH . 
F 4 HOH A 20 320 320 HOH HOH . 
F 4 HOH A 21 321 321 HOH HOH . 
F 4 HOH A 22 322 322 HOH HOH . 
F 4 HOH A 23 323 323 HOH HOH . 
F 4 HOH A 24 324 324 HOH HOH . 
F 4 HOH A 25 325 325 HOH HOH . 
F 4 HOH A 26 326 326 HOH HOH . 
F 4 HOH A 27 327 327 HOH HOH . 
F 4 HOH A 28 328 328 HOH HOH . 
F 4 HOH A 29 329 329 HOH HOH . 
F 4 HOH A 30 330 330 HOH HOH . 
F 4 HOH A 31 331 331 HOH HOH . 
F 4 HOH A 32 332 332 HOH HOH . 
F 4 HOH A 33 333 333 HOH HOH . 
F 4 HOH A 34 334 334 HOH HOH . 
F 4 HOH A 35 335 335 HOH HOH . 
F 4 HOH A 36 336 336 HOH HOH . 
F 4 HOH A 37 337 337 HOH HOH . 
F 4 HOH A 38 338 338 HOH HOH . 
F 4 HOH A 39 339 339 HOH HOH . 
F 4 HOH A 40 340 340 HOH HOH . 
F 4 HOH A 41 341 341 HOH HOH . 
F 4 HOH A 42 342 342 HOH HOH . 
F 4 HOH A 43 343 343 HOH HOH . 
F 4 HOH A 44 344 344 HOH HOH . 
F 4 HOH A 45 345 345 HOH HOH . 
F 4 HOH A 46 346 346 HOH HOH . 
F 4 HOH A 47 347 347 HOH HOH . 
F 4 HOH A 48 348 348 HOH HOH . 
F 4 HOH A 49 349 349 HOH HOH . 
F 4 HOH A 50 350 350 HOH HOH . 
F 4 HOH A 51 351 351 HOH HOH . 
F 4 HOH A 52 352 352 HOH HOH . 
F 4 HOH A 53 353 353 HOH HOH . 
F 4 HOH A 54 354 354 HOH HOH . 
F 4 HOH A 55 355 355 HOH HOH . 
F 4 HOH A 56 356 356 HOH HOH . 
F 4 HOH A 57 357 357 HOH HOH . 
F 4 HOH A 58 358 358 HOH HOH . 
F 4 HOH A 59 359 359 HOH HOH . 
F 4 HOH A 60 360 360 HOH HOH . 
F 4 HOH A 61 361 361 HOH HOH . 
F 4 HOH A 62 362 362 HOH HOH . 
F 4 HOH A 63 363 363 HOH HOH . 
F 4 HOH A 64 364 364 HOH HOH . 
F 4 HOH A 65 365 365 HOH HOH . 
F 4 HOH A 66 366 366 HOH HOH . 
F 4 HOH A 67 367 367 HOH HOH . 
F 4 HOH A 68 368 368 HOH HOH . 
F 4 HOH A 69 369 369 HOH HOH . 
F 4 HOH A 70 370 370 HOH HOH . 
F 4 HOH A 71 371 371 HOH HOH . 
F 4 HOH A 72 372 372 HOH HOH . 
F 4 HOH A 73 373 373 HOH HOH . 
F 4 HOH A 74 374 374 HOH HOH . 
F 4 HOH A 75 375 375 HOH HOH . 
F 4 HOH A 76 376 376 HOH HOH . 
F 4 HOH A 77 377 377 HOH HOH . 
F 4 HOH A 78 378 378 HOH HOH . 
F 4 HOH A 79 379 379 HOH HOH . 
F 4 HOH A 80 380 380 HOH HOH . 
F 4 HOH A 81 381 381 HOH HOH . 
F 4 HOH A 82 382 382 HOH HOH . 
F 4 HOH A 83 383 383 HOH HOH . 
F 4 HOH A 84 384 384 HOH HOH . 
F 4 HOH A 85 385 385 HOH HOH . 
F 4 HOH A 86 386 386 HOH HOH . 
F 4 HOH A 87 387 387 HOH HOH . 
F 4 HOH A 88 388 388 HOH HOH . 
F 4 HOH A 89 389 389 HOH HOH . 
F 4 HOH A 90 390 390 HOH HOH . 
F 4 HOH A 91 391 391 HOH HOH . 
F 4 HOH A 92 392 392 HOH HOH . 
F 4 HOH A 93 393 393 HOH HOH . 
F 4 HOH A 94 394 394 HOH HOH . 
F 4 HOH A 95 395 395 HOH HOH . 
F 4 HOH A 96 396 396 HOH HOH . 
F 4 HOH A 97 397 397 HOH HOH . 
F 4 HOH A 98 398 398 HOH HOH . 
G 4 HOH B 1 301 301 HOH HOH . 
G 4 HOH B 2 302 302 HOH HOH . 
G 4 HOH B 3 303 303 HOH HOH . 
G 4 HOH B 4 304 304 HOH HOH . 
G 4 HOH B 5 305 305 HOH HOH . 
G 4 HOH B 6 306 306 HOH HOH . 
G 4 HOH B 7 307 307 HOH HOH . 
G 4 HOH B 8 308 308 HOH HOH . 
G 4 HOH B 9 309 309 HOH HOH . 
G 4 HOH B 10 310 310 HOH HOH . 
G 4 HOH B 11 311 311 HOH HOH . 
G 4 HOH B 12 312 312 HOH HOH . 
G 4 HOH B 13 313 313 HOH HOH . 
G 4 HOH B 14 314 314 HOH HOH . 
G 4 HOH B 15 315 315 HOH HOH . 
G 4 HOH B 16 316 316 HOH HOH . 
G 4 HOH B 17 317 317 HOH HOH . 
G 4 HOH B 18 318 318 HOH HOH . 
G 4 HOH B 19 319 319 HOH HOH . 
G 4 HOH B 20 320 320 HOH HOH . 
G 4 HOH B 21 321 321 HOH HOH . 
G 4 HOH B 22 322 322 HOH HOH . 
G 4 HOH B 23 323 323 HOH HOH . 
G 4 HOH B 24 324 324 HOH HOH . 
G 4 HOH B 25 325 325 HOH HOH . 
G 4 HOH B 26 326 326 HOH HOH . 
G 4 HOH B 27 327 327 HOH HOH . 
G 4 HOH B 28 328 328 HOH HOH . 
G 4 HOH B 29 329 329 HOH HOH . 
G 4 HOH B 30 330 330 HOH HOH . 
G 4 HOH B 31 331 331 HOH HOH . 
G 4 HOH B 32 332 332 HOH HOH . 
G 4 HOH B 33 333 333 HOH HOH . 
G 4 HOH B 34 334 334 HOH HOH . 
G 4 HOH B 35 335 335 HOH HOH . 
G 4 HOH B 36 336 336 HOH HOH . 
G 4 HOH B 37 337 337 HOH HOH . 
G 4 HOH B 38 338 338 HOH HOH . 
G 4 HOH B 39 339 339 HOH HOH . 
G 4 HOH B 40 340 340 HOH HOH . 
G 4 HOH B 41 341 341 HOH HOH . 
G 4 HOH B 42 342 342 HOH HOH . 
G 4 HOH B 43 343 343 HOH HOH . 
G 4 HOH B 44 344 344 HOH HOH . 
G 4 HOH B 45 345 345 HOH HOH . 
G 4 HOH B 46 346 346 HOH HOH . 
G 4 HOH B 47 347 347 HOH HOH . 
G 4 HOH B 48 348 348 HOH HOH . 
G 4 HOH B 49 349 349 HOH HOH . 
G 4 HOH B 50 350 350 HOH HOH . 
G 4 HOH B 51 351 351 HOH HOH . 
G 4 HOH B 52 352 352 HOH HOH . 
G 4 HOH B 53 353 353 HOH HOH . 
G 4 HOH B 54 354 354 HOH HOH . 
G 4 HOH B 55 355 355 HOH HOH . 
G 4 HOH B 56 356 356 HOH HOH . 
G 4 HOH B 57 357 357 HOH HOH . 
G 4 HOH B 58 358 358 HOH HOH . 
G 4 HOH B 59 359 359 HOH HOH . 
G 4 HOH B 60 360 360 HOH HOH . 
G 4 HOH B 61 361 361 HOH HOH . 
G 4 HOH B 62 362 362 HOH HOH . 
G 4 HOH B 63 363 363 HOH HOH . 
G 4 HOH B 64 364 364 HOH HOH . 
G 4 HOH B 65 365 365 HOH HOH . 
G 4 HOH B 66 366 366 HOH HOH . 
G 4 HOH B 67 367 367 HOH HOH . 
G 4 HOH B 68 368 368 HOH HOH . 
G 4 HOH B 69 369 369 HOH HOH . 
G 4 HOH B 70 370 370 HOH HOH . 
G 4 HOH B 71 371 371 HOH HOH . 
G 4 HOH B 72 372 372 HOH HOH . 
G 4 HOH B 73 373 373 HOH HOH . 
G 4 HOH B 74 374 374 HOH HOH . 
G 4 HOH B 75 375 375 HOH HOH . 
G 4 HOH B 76 376 376 HOH HOH . 
G 4 HOH B 77 377 377 HOH HOH . 
G 4 HOH B 78 378 378 HOH HOH . 
G 4 HOH B 79 379 379 HOH HOH . 
G 4 HOH B 80 380 380 HOH HOH . 
G 4 HOH B 81 381 381 HOH HOH . 
G 4 HOH B 82 382 382 HOH HOH . 
G 4 HOH B 83 383 383 HOH HOH . 
G 4 HOH B 84 384 384 HOH HOH . 
G 4 HOH B 85 385 385 HOH HOH . 
G 4 HOH B 86 386 386 HOH HOH . 
G 4 HOH B 87 387 387 HOH HOH . 
G 4 HOH B 88 388 388 HOH HOH . 
G 4 HOH B 89 389 389 HOH HOH . 
G 4 HOH B 90 390 390 HOH HOH . 
G 4 HOH B 91 391 391 HOH HOH . 
G 4 HOH B 92 392 392 HOH HOH . 
G 4 HOH B 93 393 393 HOH HOH . 
G 4 HOH B 94 394 394 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -19.311 
_atom_site.Cartn_y               17.851 
_atom_site.Cartn_z               69.405 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        81.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#