data_5L4L # _model_server_result.job_id dNu4goYBq3R-Iy5-bNOJJg _model_server_result.datetime_utc '2024-11-24 15:53:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5L4L # _exptl.entry_id 5L4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L4L _cell.length_a 51.93 _cell.length_b 53.66 _cell.length_c 102.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 242 n n C1 C2 GOL sing 243 n n C1 H11 GOL sing 244 n n C1 H12 GOL sing 245 n n O1 HO1 GOL sing 246 n n C2 O2 GOL sing 247 n n C2 C3 GOL sing 248 n n C2 H2 GOL sing 249 n n O2 HO2 GOL sing 250 n n C3 O3 GOL sing 251 n n C3 H31 GOL sing 252 n n C3 H32 GOL sing 253 n n O3 HO3 GOL sing 254 n n # _atom_sites.entry_id 5L4L _atom_sites.fract_transf_matrix[1][1] 0.019257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 400 GOL GOL . C 3 NAP A 1 302 500 NAP NAP . D 4 7OX A 1 303 600 7OX 7OX . E 5 HOH A 1 401 297 HOH HOH . E 5 HOH A 2 402 260 HOH HOH . E 5 HOH A 3 403 145 HOH HOH . E 5 HOH A 4 404 262 HOH HOH . E 5 HOH A 5 405 81 HOH HOH . E 5 HOH A 6 406 157 HOH HOH . E 5 HOH A 7 407 201 HOH HOH . E 5 HOH A 8 408 280 HOH HOH . E 5 HOH A 9 409 314 HOH HOH . E 5 HOH A 10 410 125 HOH HOH . E 5 HOH A 11 411 134 HOH HOH . E 5 HOH A 12 412 95 HOH HOH . E 5 HOH A 13 413 63 HOH HOH . E 5 HOH A 14 414 175 HOH HOH . E 5 HOH A 15 415 159 HOH HOH . E 5 HOH A 16 416 29 HOH HOH . E 5 HOH A 17 417 211 HOH HOH . E 5 HOH A 18 418 208 HOH HOH . E 5 HOH A 19 419 112 HOH HOH . E 5 HOH A 20 420 212 HOH HOH . E 5 HOH A 21 421 140 HOH HOH . E 5 HOH A 22 422 182 HOH HOH . E 5 HOH A 23 423 84 HOH HOH . E 5 HOH A 24 424 160 HOH HOH . E 5 HOH A 25 425 48 HOH HOH . E 5 HOH A 26 426 128 HOH HOH . E 5 HOH A 27 427 184 HOH HOH . E 5 HOH A 28 428 120 HOH HOH . E 5 HOH A 29 429 39 HOH HOH . E 5 HOH A 30 430 318 HOH HOH . E 5 HOH A 31 431 320 HOH HOH . E 5 HOH A 32 432 101 HOH HOH . E 5 HOH A 33 433 97 HOH HOH . E 5 HOH A 34 434 62 HOH HOH . E 5 HOH A 35 435 4 HOH HOH . E 5 HOH A 36 436 217 HOH HOH . E 5 HOH A 37 437 275 HOH HOH . E 5 HOH A 38 438 26 HOH HOH . E 5 HOH A 39 439 78 HOH HOH . E 5 HOH A 40 440 51 HOH HOH . E 5 HOH A 41 441 234 HOH HOH . E 5 HOH A 42 442 279 HOH HOH . E 5 HOH A 43 443 149 HOH HOH . E 5 HOH A 44 444 40 HOH HOH . E 5 HOH A 45 445 69 HOH HOH . E 5 HOH A 46 446 47 HOH HOH . E 5 HOH A 47 447 7 HOH HOH . E 5 HOH A 48 448 87 HOH HOH . E 5 HOH A 49 449 50 HOH HOH . E 5 HOH A 50 450 88 HOH HOH . E 5 HOH A 51 451 76 HOH HOH . E 5 HOH A 52 452 20 HOH HOH . E 5 HOH A 53 453 271 HOH HOH . E 5 HOH A 54 454 44 HOH HOH . E 5 HOH A 55 455 170 HOH HOH . E 5 HOH A 56 456 13 HOH HOH . E 5 HOH A 57 457 100 HOH HOH . E 5 HOH A 58 458 135 HOH HOH . E 5 HOH A 59 459 25 HOH HOH . E 5 HOH A 60 460 98 HOH HOH . E 5 HOH A 61 461 23 HOH HOH . E 5 HOH A 62 462 315 HOH HOH . E 5 HOH A 63 463 61 HOH HOH . E 5 HOH A 64 464 177 HOH HOH . E 5 HOH A 65 465 152 HOH HOH . E 5 HOH A 66 466 37 HOH HOH . E 5 HOH A 67 467 121 HOH HOH . E 5 HOH A 68 468 11 HOH HOH . E 5 HOH A 69 469 241 HOH HOH . E 5 HOH A 70 470 38 HOH HOH . E 5 HOH A 71 471 5 HOH HOH . E 5 HOH A 72 472 245 HOH HOH . E 5 HOH A 73 473 15 HOH HOH . E 5 HOH A 74 474 109 HOH HOH . E 5 HOH A 75 475 226 HOH HOH . E 5 HOH A 76 476 24 HOH HOH . E 5 HOH A 77 477 9 HOH HOH . E 5 HOH A 78 478 246 HOH HOH . E 5 HOH A 79 479 289 HOH HOH . E 5 HOH A 80 480 117 HOH HOH . E 5 HOH A 81 481 176 HOH HOH . E 5 HOH A 82 482 183 HOH HOH . E 5 HOH A 83 483 36 HOH HOH . E 5 HOH A 84 484 214 HOH HOH . E 5 HOH A 85 485 114 HOH HOH . E 5 HOH A 86 486 57 HOH HOH . E 5 HOH A 87 487 196 HOH HOH . E 5 HOH A 88 488 122 HOH HOH . E 5 HOH A 89 489 2 HOH HOH . E 5 HOH A 90 490 219 HOH HOH . E 5 HOH A 91 491 303 HOH HOH . E 5 HOH A 92 492 107 HOH HOH . E 5 HOH A 93 493 82 HOH HOH . E 5 HOH A 94 494 286 HOH HOH . E 5 HOH A 95 495 89 HOH HOH . E 5 HOH A 96 496 192 HOH HOH . E 5 HOH A 97 497 281 HOH HOH . E 5 HOH A 98 498 115 HOH HOH . E 5 HOH A 99 499 1 HOH HOH . E 5 HOH A 100 500 16 HOH HOH . E 5 HOH A 101 501 207 HOH HOH . E 5 HOH A 102 502 34 HOH HOH . E 5 HOH A 103 503 287 HOH HOH . E 5 HOH A 104 504 252 HOH HOH . E 5 HOH A 105 505 8 HOH HOH . E 5 HOH A 106 506 274 HOH HOH . E 5 HOH A 107 507 27 HOH HOH . E 5 HOH A 108 508 14 HOH HOH . E 5 HOH A 109 509 111 HOH HOH . E 5 HOH A 110 510 70 HOH HOH . E 5 HOH A 111 511 249 HOH HOH . E 5 HOH A 112 512 104 HOH HOH . E 5 HOH A 113 513 31 HOH HOH . E 5 HOH A 114 514 108 HOH HOH . E 5 HOH A 115 515 105 HOH HOH . E 5 HOH A 116 516 259 HOH HOH . E 5 HOH A 117 517 151 HOH HOH . E 5 HOH A 118 518 179 HOH HOH . E 5 HOH A 119 519 91 HOH HOH . E 5 HOH A 120 520 216 HOH HOH . E 5 HOH A 121 521 6 HOH HOH . E 5 HOH A 122 522 288 HOH HOH . E 5 HOH A 123 523 45 HOH HOH . E 5 HOH A 124 524 53 HOH HOH . E 5 HOH A 125 525 313 HOH HOH . E 5 HOH A 126 526 195 HOH HOH . E 5 HOH A 127 527 321 HOH HOH . E 5 HOH A 128 528 173 HOH HOH . E 5 HOH A 129 529 146 HOH HOH . E 5 HOH A 130 530 225 HOH HOH . E 5 HOH A 131 531 232 HOH HOH . E 5 HOH A 132 532 19 HOH HOH . E 5 HOH A 133 533 268 HOH HOH . E 5 HOH A 134 534 317 HOH HOH . E 5 HOH A 135 535 66 HOH HOH . E 5 HOH A 136 536 206 HOH HOH . E 5 HOH A 137 537 165 HOH HOH . E 5 HOH A 138 538 295 HOH HOH . E 5 HOH A 139 539 10 HOH HOH . E 5 HOH A 140 540 261 HOH HOH . E 5 HOH A 141 541 71 HOH HOH . E 5 HOH A 142 542 74 HOH HOH . E 5 HOH A 143 543 99 HOH HOH . E 5 HOH A 144 544 17 HOH HOH . E 5 HOH A 145 545 171 HOH HOH . E 5 HOH A 146 546 316 HOH HOH . E 5 HOH A 147 547 132 HOH HOH . E 5 HOH A 148 548 18 HOH HOH . E 5 HOH A 149 549 42 HOH HOH . E 5 HOH A 150 550 142 HOH HOH . E 5 HOH A 151 551 269 HOH HOH . E 5 HOH A 152 552 293 HOH HOH . E 5 HOH A 153 553 79 HOH HOH . E 5 HOH A 154 554 35 HOH HOH . E 5 HOH A 155 555 236 HOH HOH . E 5 HOH A 156 556 200 HOH HOH . E 5 HOH A 157 557 22 HOH HOH . E 5 HOH A 158 558 30 HOH HOH . E 5 HOH A 159 559 60 HOH HOH . E 5 HOH A 160 560 96 HOH HOH . E 5 HOH A 161 561 64 HOH HOH . E 5 HOH A 162 562 285 HOH HOH . E 5 HOH A 163 563 169 HOH HOH . E 5 HOH A 164 564 218 HOH HOH . E 5 HOH A 165 565 144 HOH HOH . E 5 HOH A 166 566 255 HOH HOH . E 5 HOH A 167 567 90 HOH HOH . E 5 HOH A 168 568 188 HOH HOH . E 5 HOH A 169 569 94 HOH HOH . E 5 HOH A 170 570 92 HOH HOH . E 5 HOH A 171 571 311 HOH HOH . E 5 HOH A 172 572 86 HOH HOH . E 5 HOH A 173 573 187 HOH HOH . E 5 HOH A 174 574 83 HOH HOH . E 5 HOH A 175 575 310 HOH HOH . E 5 HOH A 176 576 106 HOH HOH . E 5 HOH A 177 577 43 HOH HOH . E 5 HOH A 178 578 300 HOH HOH . E 5 HOH A 179 579 301 HOH HOH . E 5 HOH A 180 580 213 HOH HOH . E 5 HOH A 181 581 181 HOH HOH . E 5 HOH A 182 582 21 HOH HOH . E 5 HOH A 183 583 161 HOH HOH . E 5 HOH A 184 584 85 HOH HOH . E 5 HOH A 185 585 235 HOH HOH . E 5 HOH A 186 586 294 HOH HOH . E 5 HOH A 187 587 58 HOH HOH . E 5 HOH A 188 588 33 HOH HOH . E 5 HOH A 189 589 12 HOH HOH . E 5 HOH A 190 590 32 HOH HOH . E 5 HOH A 191 591 322 HOH HOH . E 5 HOH A 192 592 49 HOH HOH . E 5 HOH A 193 593 270 HOH HOH . E 5 HOH A 194 594 155 HOH HOH . E 5 HOH A 195 595 73 HOH HOH . E 5 HOH A 196 596 77 HOH HOH . E 5 HOH A 197 597 264 HOH HOH . E 5 HOH A 198 598 190 HOH HOH . E 5 HOH A 199 599 3 HOH HOH . E 5 HOH A 200 600 46 HOH HOH . E 5 HOH A 201 601 166 HOH HOH . E 5 HOH A 202 602 306 HOH HOH . E 5 HOH A 203 603 273 HOH HOH . E 5 HOH A 204 604 55 HOH HOH . E 5 HOH A 205 605 116 HOH HOH . E 5 HOH A 206 606 239 HOH HOH . E 5 HOH A 207 607 215 HOH HOH . E 5 HOH A 208 608 221 HOH HOH . E 5 HOH A 209 609 68 HOH HOH . E 5 HOH A 210 610 28 HOH HOH . E 5 HOH A 211 611 308 HOH HOH . E 5 HOH A 212 612 197 HOH HOH . E 5 HOH A 213 613 123 HOH HOH . E 5 HOH A 214 614 223 HOH HOH . E 5 HOH A 215 615 304 HOH HOH . E 5 HOH A 216 616 56 HOH HOH . E 5 HOH A 217 617 110 HOH HOH . E 5 HOH A 218 618 80 HOH HOH . E 5 HOH A 219 619 312 HOH HOH . E 5 HOH A 220 620 191 HOH HOH . E 5 HOH A 221 621 41 HOH HOH . E 5 HOH A 222 622 278 HOH HOH . E 5 HOH A 223 623 168 HOH HOH . E 5 HOH A 224 624 193 HOH HOH . E 5 HOH A 225 625 263 HOH HOH . E 5 HOH A 226 626 321 HOH HOH . E 5 HOH A 227 627 118 HOH HOH . E 5 HOH A 228 628 266 HOH HOH . E 5 HOH A 229 629 251 HOH HOH . E 5 HOH A 230 630 119 HOH HOH . E 5 HOH A 231 631 277 HOH HOH . E 5 HOH A 232 632 150 HOH HOH . E 5 HOH A 233 633 65 HOH HOH . E 5 HOH A 234 634 265 HOH HOH . E 5 HOH A 235 635 158 HOH HOH . E 5 HOH A 236 636 272 HOH HOH . E 5 HOH A 237 637 323 HOH HOH . E 5 HOH A 238 638 172 HOH HOH . E 5 HOH A 239 639 209 HOH HOH . E 5 HOH A 240 640 256 HOH HOH . E 5 HOH A 241 641 202 HOH HOH . E 5 HOH A 242 642 282 HOH HOH . E 5 HOH A 243 643 156 HOH HOH . E 5 HOH A 244 644 229 HOH HOH . E 5 HOH A 245 645 233 HOH HOH . E 5 HOH A 246 646 276 HOH HOH . E 5 HOH A 247 647 93 HOH HOH . E 5 HOH A 248 648 137 HOH HOH . E 5 HOH A 249 649 148 HOH HOH . E 5 HOH A 250 650 133 HOH HOH . E 5 HOH A 251 651 129 HOH HOH . E 5 HOH A 252 652 267 HOH HOH . E 5 HOH A 253 653 296 HOH HOH . E 5 HOH A 254 654 67 HOH HOH . E 5 HOH A 255 655 231 HOH HOH . E 5 HOH A 256 656 227 HOH HOH . E 5 HOH A 257 657 242 HOH HOH . E 5 HOH A 258 658 59 HOH HOH . E 5 HOH A 259 659 205 HOH HOH . E 5 HOH A 260 660 204 HOH HOH . E 5 HOH A 261 661 292 HOH HOH . E 5 HOH A 262 662 309 HOH HOH . E 5 HOH A 263 663 230 HOH HOH . E 5 HOH A 264 664 203 HOH HOH . E 5 HOH A 265 665 141 HOH HOH . E 5 HOH A 266 666 307 HOH HOH . E 5 HOH A 267 667 54 HOH HOH . E 5 HOH A 268 668 283 HOH HOH . E 5 HOH A 269 669 302 HOH HOH . E 5 HOH A 270 670 254 HOH HOH . E 5 HOH A 271 671 126 HOH HOH . E 5 HOH A 272 672 224 HOH HOH . E 5 HOH A 273 673 258 HOH HOH . E 5 HOH A 274 674 243 HOH HOH . E 5 HOH A 275 675 143 HOH HOH . E 5 HOH A 276 676 240 HOH HOH . E 5 HOH A 277 677 253 HOH HOH . E 5 HOH A 278 678 162 HOH HOH . E 5 HOH A 279 679 290 HOH HOH . E 5 HOH A 280 680 220 HOH HOH . E 5 HOH A 281 681 153 HOH HOH . E 5 HOH A 282 682 75 HOH HOH . E 5 HOH A 283 683 298 HOH HOH . E 5 HOH A 284 684 189 HOH HOH . E 5 HOH A 285 685 147 HOH HOH . E 5 HOH A 286 686 299 HOH HOH . E 5 HOH A 287 687 244 HOH HOH . E 5 HOH A 288 688 305 HOH HOH . E 5 HOH A 289 689 194 HOH HOH . E 5 HOH A 290 690 139 HOH HOH . E 5 HOH A 291 691 238 HOH HOH . E 5 HOH A 292 692 222 HOH HOH . E 5 HOH A 293 693 130 HOH HOH . E 5 HOH A 294 694 198 HOH HOH . E 5 HOH A 295 695 180 HOH HOH . E 5 HOH A 296 696 52 HOH HOH . E 5 HOH A 297 697 324 HOH HOH . E 5 HOH A 298 698 248 HOH HOH . E 5 HOH A 299 699 319 HOH HOH . E 5 HOH A 300 700 154 HOH HOH . E 5 HOH A 301 701 136 HOH HOH . E 5 HOH A 302 702 174 HOH HOH . E 5 HOH A 303 703 138 HOH HOH . E 5 HOH A 304 704 163 HOH HOH . E 5 HOH A 305 705 186 HOH HOH . E 5 HOH A 306 706 113 HOH HOH . E 5 HOH A 307 707 167 HOH HOH . E 5 HOH A 308 708 250 HOH HOH . E 5 HOH A 309 709 228 HOH HOH . E 5 HOH A 310 710 199 HOH HOH . E 5 HOH A 311 711 185 HOH HOH . E 5 HOH A 312 712 178 HOH HOH . E 5 HOH A 313 713 237 HOH HOH . E 5 HOH A 314 714 127 HOH HOH . E 5 HOH A 315 715 210 HOH HOH . E 5 HOH A 316 716 124 HOH HOH . E 5 HOH A 317 717 103 HOH HOH . E 5 HOH A 318 718 247 HOH HOH . E 5 HOH A 319 719 102 HOH HOH . E 5 HOH A 320 720 164 HOH HOH . E 5 HOH A 321 721 72 HOH HOH . E 5 HOH A 322 722 291 HOH HOH . E 5 HOH A 323 723 257 HOH HOH . E 5 HOH A 324 724 131 HOH HOH . E 5 HOH A 325 725 284 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -9.269 1.067 4.574 1 35.29 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 -10.198 1.822 3.861 1 31.13 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 -9.934 0.594 5.841 1 30.03 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 -9.243 -0.562 6.285 1 26.77 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 -10.029 1.691 6.879 1 26.84 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 -8.755 2.245 7.322 1 17.63 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 693 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #