data_5L4M
#
_model_server_result.job_id            8ysYuzfvKYNy8s9bolwZZQ 
_model_server_result.datetime_utc      '2024-10-14 04:28:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5L4M 
#
_exptl.entry_id    5L4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.471 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Triclopyr 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L4M 
_cell.length_a            42.543 
_cell.length_b            85.52 
_cell.length_c            64.012 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -42.543 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc2 D NA NA . A NA 202 1_555 F O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 D NA NA . A NA 202 1_555 F O HOH . A HOH 304 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 D NA NA . A NA 202 1_555 F O HOH . A HOH 362 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc5 D NA NA . A NA 202 1_555 F O HOH . A HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
#
_chem_comp.formula           'C7 H4 Cl3 N O3' 
_chem_comp.formula_weight    256.471 
_chem_comp.id                SBK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Triclopyr 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O13 C11 SBK doub 258 n n 
C11 C10 SBK sing 259 n n 
C11 O12 SBK sing 260 n n 
C10 O09 SBK sing 261 n n 
O09 C03 SBK sing 262 n n 
N04 C03 SBK doub 263 n y 
N04 C05 SBK sing 264 n y 
C03 C02 SBK sing 265 n y 
CL5 C05 SBK sing 266 n n 
C05 C06 SBK doub 267 n y 
CL2 C02 SBK sing 268 n n 
C02 C01 SBK doub 269 n y 
C06 C01 SBK sing 270 n y 
C06 CL6 SBK sing 271 n n 
C01 H011 SBK sing 272 n n 
C10 H101 SBK sing 273 n n 
C10 H102 SBK sing 274 n n 
O12 H1 SBK sing 275 n n 
#
_atom_sites.entry_id                     5L4M 
_atom_sites.fract_transf_matrix[1][1]    0.023506 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SBK A 1 201 1 SBK PYR . 
D 3 NA A 1 202 1 NA NA . 
E 2 SBK B 1 201 2 SBK PYR . 
F 4 HOH A 1 301 113 HOH HOH . 
F 4 HOH A 2 302 42 HOH HOH . 
F 4 HOH A 3 303 64 HOH HOH . 
F 4 HOH A 4 304 195 HOH HOH . 
F 4 HOH A 5 305 100 HOH HOH . 
F 4 HOH A 6 306 67 HOH HOH . 
F 4 HOH A 7 307 152 HOH HOH . 
F 4 HOH A 8 308 125 HOH HOH . 
F 4 HOH A 9 309 79 HOH HOH . 
F 4 HOH A 10 310 8 HOH HOH . 
F 4 HOH A 11 311 171 HOH HOH . 
F 4 HOH A 12 312 161 HOH HOH . 
F 4 HOH A 13 313 147 HOH HOH . 
F 4 HOH A 14 314 57 HOH HOH . 
F 4 HOH A 15 315 163 HOH HOH . 
F 4 HOH A 16 316 172 HOH HOH . 
F 4 HOH A 17 317 16 HOH HOH . 
F 4 HOH A 18 318 124 HOH HOH . 
F 4 HOH A 19 319 121 HOH HOH . 
F 4 HOH A 20 320 110 HOH HOH . 
F 4 HOH A 21 321 118 HOH HOH . 
F 4 HOH A 22 322 101 HOH HOH . 
F 4 HOH A 23 323 18 HOH HOH . 
F 4 HOH A 24 324 84 HOH HOH . 
F 4 HOH A 25 325 26 HOH HOH . 
F 4 HOH A 26 326 38 HOH HOH . 
F 4 HOH A 27 327 34 HOH HOH . 
F 4 HOH A 28 328 40 HOH HOH . 
F 4 HOH A 29 329 128 HOH HOH . 
F 4 HOH A 30 330 2 HOH HOH . 
F 4 HOH A 31 331 50 HOH HOH . 
F 4 HOH A 32 332 24 HOH HOH . 
F 4 HOH A 33 333 5 HOH HOH . 
F 4 HOH A 34 334 25 HOH HOH . 
F 4 HOH A 35 335 174 HOH HOH . 
F 4 HOH A 36 336 176 HOH HOH . 
F 4 HOH A 37 337 68 HOH HOH . 
F 4 HOH A 38 338 47 HOH HOH . 
F 4 HOH A 39 339 99 HOH HOH . 
F 4 HOH A 40 340 3 HOH HOH . 
F 4 HOH A 41 341 117 HOH HOH . 
F 4 HOH A 42 342 44 HOH HOH . 
F 4 HOH A 43 343 6 HOH HOH . 
F 4 HOH A 44 344 73 HOH HOH . 
F 4 HOH A 45 345 66 HOH HOH . 
F 4 HOH A 46 346 137 HOH HOH . 
F 4 HOH A 47 347 12 HOH HOH . 
F 4 HOH A 48 348 29 HOH HOH . 
F 4 HOH A 49 349 75 HOH HOH . 
F 4 HOH A 50 350 140 HOH HOH . 
F 4 HOH A 51 351 65 HOH HOH . 
F 4 HOH A 52 352 14 HOH HOH . 
F 4 HOH A 53 353 96 HOH HOH . 
F 4 HOH A 54 354 37 HOH HOH . 
F 4 HOH A 55 355 175 HOH HOH . 
F 4 HOH A 56 356 21 HOH HOH . 
F 4 HOH A 57 357 22 HOH HOH . 
F 4 HOH A 58 358 111 HOH HOH . 
F 4 HOH A 59 359 158 HOH HOH . 
F 4 HOH A 60 360 91 HOH HOH . 
F 4 HOH A 61 361 189 HOH HOH . 
F 4 HOH A 62 362 194 HOH HOH . 
F 4 HOH A 63 363 106 HOH HOH . 
F 4 HOH A 64 364 198 HOH HOH . 
F 4 HOH A 65 365 191 HOH HOH . 
F 4 HOH A 66 366 105 HOH HOH . 
F 4 HOH A 67 367 30 HOH HOH . 
F 4 HOH A 68 368 144 HOH HOH . 
F 4 HOH A 69 369 19 HOH HOH . 
F 4 HOH A 70 370 39 HOH HOH . 
F 4 HOH A 71 371 23 HOH HOH . 
F 4 HOH A 72 372 55 HOH HOH . 
F 4 HOH A 73 373 177 HOH HOH . 
F 4 HOH A 74 374 87 HOH HOH . 
F 4 HOH A 75 375 150 HOH HOH . 
F 4 HOH A 76 376 145 HOH HOH . 
F 4 HOH A 77 377 74 HOH HOH . 
F 4 HOH A 78 378 41 HOH HOH . 
F 4 HOH A 79 379 45 HOH HOH . 
F 4 HOH A 80 380 54 HOH HOH . 
F 4 HOH A 81 381 160 HOH HOH . 
F 4 HOH A 82 382 95 HOH HOH . 
F 4 HOH A 83 383 173 HOH HOH . 
F 4 HOH A 84 384 120 HOH HOH . 
F 4 HOH A 85 385 154 HOH HOH . 
F 4 HOH A 86 386 130 HOH HOH . 
F 4 HOH A 87 387 126 HOH HOH . 
F 4 HOH A 88 388 98 HOH HOH . 
F 4 HOH A 89 389 170 HOH HOH . 
F 4 HOH A 90 390 69 HOH HOH . 
F 4 HOH A 91 391 196 HOH HOH . 
F 4 HOH A 92 392 193 HOH HOH . 
F 4 HOH A 93 393 164 HOH HOH . 
F 4 HOH A 94 394 148 HOH HOH . 
F 4 HOH A 95 395 156 HOH HOH . 
F 4 HOH A 96 396 52 HOH HOH . 
F 4 HOH A 97 397 184 HOH HOH . 
F 4 HOH A 98 398 58 HOH HOH . 
F 4 HOH A 99 399 81 HOH HOH . 
F 4 HOH A 100 400 88 HOH HOH . 
F 4 HOH A 101 401 135 HOH HOH . 
F 4 HOH A 102 402 108 HOH HOH . 
F 4 HOH A 103 403 190 HOH HOH . 
F 4 HOH A 104 404 169 HOH HOH . 
F 4 HOH A 105 405 136 HOH HOH . 
F 4 HOH A 106 406 167 HOH HOH . 
F 4 HOH A 107 407 146 HOH HOH . 
F 4 HOH A 108 408 131 HOH HOH . 
F 4 HOH A 109 409 53 HOH HOH . 
G 4 HOH B 1 301 103 HOH HOH . 
G 4 HOH B 2 302 192 HOH HOH . 
G 4 HOH B 3 303 48 HOH HOH . 
G 4 HOH B 4 304 142 HOH HOH . 
G 4 HOH B 5 305 134 HOH HOH . 
G 4 HOH B 6 306 92 HOH HOH . 
G 4 HOH B 7 307 61 HOH HOH . 
G 4 HOH B 8 308 202 HOH HOH . 
G 4 HOH B 9 309 83 HOH HOH . 
G 4 HOH B 10 310 188 HOH HOH . 
G 4 HOH B 11 311 72 HOH HOH . 
G 4 HOH B 12 312 9 HOH HOH . 
G 4 HOH B 13 313 60 HOH HOH . 
G 4 HOH B 14 314 20 HOH HOH . 
G 4 HOH B 15 315 10 HOH HOH . 
G 4 HOH B 16 316 80 HOH HOH . 
G 4 HOH B 17 317 76 HOH HOH . 
G 4 HOH B 18 318 143 HOH HOH . 
G 4 HOH B 19 319 89 HOH HOH . 
G 4 HOH B 20 320 11 HOH HOH . 
G 4 HOH B 21 321 86 HOH HOH . 
G 4 HOH B 22 322 197 HOH HOH . 
G 4 HOH B 23 323 138 HOH HOH . 
G 4 HOH B 24 324 168 HOH HOH . 
G 4 HOH B 25 325 7 HOH HOH . 
G 4 HOH B 26 326 141 HOH HOH . 
G 4 HOH B 27 327 129 HOH HOH . 
G 4 HOH B 28 328 4 HOH HOH . 
G 4 HOH B 29 329 51 HOH HOH . 
G 4 HOH B 30 330 1 HOH HOH . 
G 4 HOH B 31 331 180 HOH HOH . 
G 4 HOH B 32 332 13 HOH HOH . 
G 4 HOH B 33 333 17 HOH HOH . 
G 4 HOH B 34 334 27 HOH HOH . 
G 4 HOH B 35 335 33 HOH HOH . 
G 4 HOH B 36 336 28 HOH HOH . 
G 4 HOH B 37 337 71 HOH HOH . 
G 4 HOH B 38 338 43 HOH HOH . 
G 4 HOH B 39 339 114 HOH HOH . 
G 4 HOH B 40 340 166 HOH HOH . 
G 4 HOH B 41 341 36 HOH HOH . 
G 4 HOH B 42 342 203 HOH HOH . 
G 4 HOH B 43 343 93 HOH HOH . 
G 4 HOH B 44 344 35 HOH HOH . 
G 4 HOH B 45 345 179 HOH HOH . 
G 4 HOH B 46 346 94 HOH HOH . 
G 4 HOH B 47 347 119 HOH HOH . 
G 4 HOH B 48 348 183 HOH HOH . 
G 4 HOH B 49 349 62 HOH HOH . 
G 4 HOH B 50 350 122 HOH HOH . 
G 4 HOH B 51 351 182 HOH HOH . 
G 4 HOH B 52 352 63 HOH HOH . 
G 4 HOH B 53 353 59 HOH HOH . 
G 4 HOH B 54 354 181 HOH HOH . 
G 4 HOH B 55 355 90 HOH HOH . 
G 4 HOH B 56 356 31 HOH HOH . 
G 4 HOH B 57 357 15 HOH HOH . 
G 4 HOH B 58 358 97 HOH HOH . 
G 4 HOH B 59 359 49 HOH HOH . 
G 4 HOH B 60 360 204 HOH HOH . 
G 4 HOH B 61 361 46 HOH HOH . 
G 4 HOH B 62 362 139 HOH HOH . 
G 4 HOH B 63 363 104 HOH HOH . 
G 4 HOH B 64 364 32 HOH HOH . 
G 4 HOH B 65 365 70 HOH HOH . 
G 4 HOH B 66 366 116 HOH HOH . 
G 4 HOH B 67 367 200 HOH HOH . 
G 4 HOH B 68 368 199 HOH HOH . 
G 4 HOH B 69 369 115 HOH HOH . 
G 4 HOH B 70 370 77 HOH HOH . 
G 4 HOH B 71 371 132 HOH HOH . 
G 4 HOH B 72 372 178 HOH HOH . 
G 4 HOH B 73 373 78 HOH HOH . 
G 4 HOH B 74 374 155 HOH HOH . 
G 4 HOH B 75 375 109 HOH HOH . 
G 4 HOH B 76 376 186 HOH HOH . 
G 4 HOH B 77 377 112 HOH HOH . 
G 4 HOH B 78 378 149 HOH HOH . 
G 4 HOH B 79 379 185 HOH HOH . 
G 4 HOH B 80 380 165 HOH HOH . 
G 4 HOH B 81 381 159 HOH HOH . 
G 4 HOH B 82 382 153 HOH HOH . 
G 4 HOH B 83 383 107 HOH HOH . 
G 4 HOH B 84 384 85 HOH HOH . 
G 4 HOH B 85 385 151 HOH HOH . 
G 4 HOH B 86 386 157 HOH HOH . 
G 4 HOH B 87 387 187 HOH HOH . 
G 4 HOH B 88 388 201 HOH HOH . 
G 4 HOH B 89 389 123 HOH HOH . 
G 4 HOH B 90 390 133 HOH HOH . 
G 4 HOH B 91 391 56 HOH HOH . 
G 4 HOH B 92 392 127 HOH HOH . 
G 4 HOH B 93 393 102 HOH HOH . 
G 4 HOH B 94 394 82 HOH HOH . 
G 4 HOH B 95 395 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 SBK . . . E 2 -20.303 -0.2 -8.513 0.5 43.37 ? C01 SBK 201 B 1 
HETATM 2 C C02 SBK . . . E 2 -20.319 0.743 -7.447 0.5 45.82 ? C02 SBK 201 B 1 
HETATM 3 C C03 SBK . . . E 2 -21.228 0.568 -6.406 0.5 45.56 ? C03 SBK 201 B 1 
HETATM 4 N N04 SBK . . . E 2 -22.069 -0.414 -6.41 0.5 45.66 ? N04 SBK 201 B 1 
HETATM 5 C C05 SBK . . . E 2 -22.095 -1.244 -7.4 0.5 45.69 ? C05 SBK 201 B 1 
HETATM 6 C C06 SBK . . . E 2 -21.238 -1.232 -8.506 0.5 40.19 ? C06 SBK 201 B 1 
HETATM 7 CL CL6 SBK . . . E 2 -21.309 -2.535 -9.709 0.5 33.18 ? CL6 SBK 201 B 1 
HETATM 8 CL CL5 SBK . . . E 2 -23.336 -2.409 -7.256 0.5 50.3 ? CL5 SBK 201 B 1 
HETATM 9 O O09 SBK . . . E 2 -21.225 1.464 -5.399 0.5 47.09 ? O09 SBK 201 B 1 
HETATM 10 C C10 SBK . . . E 2 -21.939 1.119 -4.167 0.5 48.38 ? C10 SBK 201 B 1 
HETATM 11 C C11 SBK . . . E 2 -21.255 -0.002 -3.453 0.5 49.38 ? C11 SBK 201 B 1 
HETATM 12 O O12 SBK . . . E 2 -21.253 -0.013 -2.234 0.5 49.52 -1 O12 SBK 201 B 1 
HETATM 13 O O13 SBK . . . E 2 -20.689 -0.949 -4.141 0.5 49.63 ? O13 SBK 201 B 1 
HETATM 14 CL CL2 SBK . . . E 2 -19.199 2.086 -7.405 0.5 47.55 ? CL2 SBK 201 B 1 
HETATM 15 H H011 SBK . . . E 2 -19.69 -0.144 -9.21 0.5 52.05 ? H011 SBK 201 B 1 
HETATM 16 H H101 SBK . . . E 2 -21.935 1.88 -3.568 0.5 58.06 ? H101 SBK 201 B 1 
HETATM 17 H H102 SBK . . . E 2 -22.841 0.823 -4.355 0.5 58.06 ? H102 SBK 201 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           17 
#