data_5L4M # _model_server_result.job_id A6azO6ye5trWa1I060p_hA _model_server_result.datetime_utc '2024-11-22 00:57:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5L4M # _exptl.entry_id 5L4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L4M _cell.length_a 42.543 _cell.length_b 85.52 _cell.length_c 64.012 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -42.543 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 D NA NA . A NA 202 1_555 F O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 D NA NA . A NA 202 1_555 F O HOH . A HOH 304 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 D NA NA . A NA 202 1_555 F O HOH . A HOH 362 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 D NA NA . A NA 202 1_555 F O HOH . A HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L4M _atom_sites.fract_transf_matrix[1][1] 0.023506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SBK A 1 201 1 SBK PYR . D 3 NA A 1 202 1 NA NA . E 2 SBK B 1 201 2 SBK PYR . F 4 HOH A 1 301 113 HOH HOH . F 4 HOH A 2 302 42 HOH HOH . F 4 HOH A 3 303 64 HOH HOH . F 4 HOH A 4 304 195 HOH HOH . F 4 HOH A 5 305 100 HOH HOH . F 4 HOH A 6 306 67 HOH HOH . F 4 HOH A 7 307 152 HOH HOH . F 4 HOH A 8 308 125 HOH HOH . F 4 HOH A 9 309 79 HOH HOH . F 4 HOH A 10 310 8 HOH HOH . F 4 HOH A 11 311 171 HOH HOH . F 4 HOH A 12 312 161 HOH HOH . F 4 HOH A 13 313 147 HOH HOH . F 4 HOH A 14 314 57 HOH HOH . F 4 HOH A 15 315 163 HOH HOH . F 4 HOH A 16 316 172 HOH HOH . F 4 HOH A 17 317 16 HOH HOH . F 4 HOH A 18 318 124 HOH HOH . F 4 HOH A 19 319 121 HOH HOH . F 4 HOH A 20 320 110 HOH HOH . F 4 HOH A 21 321 118 HOH HOH . F 4 HOH A 22 322 101 HOH HOH . F 4 HOH A 23 323 18 HOH HOH . F 4 HOH A 24 324 84 HOH HOH . F 4 HOH A 25 325 26 HOH HOH . F 4 HOH A 26 326 38 HOH HOH . F 4 HOH A 27 327 34 HOH HOH . F 4 HOH A 28 328 40 HOH HOH . F 4 HOH A 29 329 128 HOH HOH . F 4 HOH A 30 330 2 HOH HOH . F 4 HOH A 31 331 50 HOH HOH . F 4 HOH A 32 332 24 HOH HOH . F 4 HOH A 33 333 5 HOH HOH . F 4 HOH A 34 334 25 HOH HOH . F 4 HOH A 35 335 174 HOH HOH . F 4 HOH A 36 336 176 HOH HOH . F 4 HOH A 37 337 68 HOH HOH . F 4 HOH A 38 338 47 HOH HOH . F 4 HOH A 39 339 99 HOH HOH . F 4 HOH A 40 340 3 HOH HOH . F 4 HOH A 41 341 117 HOH HOH . F 4 HOH A 42 342 44 HOH HOH . F 4 HOH A 43 343 6 HOH HOH . F 4 HOH A 44 344 73 HOH HOH . F 4 HOH A 45 345 66 HOH HOH . F 4 HOH A 46 346 137 HOH HOH . F 4 HOH A 47 347 12 HOH HOH . F 4 HOH A 48 348 29 HOH HOH . F 4 HOH A 49 349 75 HOH HOH . F 4 HOH A 50 350 140 HOH HOH . F 4 HOH A 51 351 65 HOH HOH . F 4 HOH A 52 352 14 HOH HOH . F 4 HOH A 53 353 96 HOH HOH . F 4 HOH A 54 354 37 HOH HOH . F 4 HOH A 55 355 175 HOH HOH . F 4 HOH A 56 356 21 HOH HOH . F 4 HOH A 57 357 22 HOH HOH . F 4 HOH A 58 358 111 HOH HOH . F 4 HOH A 59 359 158 HOH HOH . F 4 HOH A 60 360 91 HOH HOH . F 4 HOH A 61 361 189 HOH HOH . F 4 HOH A 62 362 194 HOH HOH . F 4 HOH A 63 363 106 HOH HOH . F 4 HOH A 64 364 198 HOH HOH . F 4 HOH A 65 365 191 HOH HOH . F 4 HOH A 66 366 105 HOH HOH . F 4 HOH A 67 367 30 HOH HOH . F 4 HOH A 68 368 144 HOH HOH . F 4 HOH A 69 369 19 HOH HOH . F 4 HOH A 70 370 39 HOH HOH . F 4 HOH A 71 371 23 HOH HOH . F 4 HOH A 72 372 55 HOH HOH . F 4 HOH A 73 373 177 HOH HOH . F 4 HOH A 74 374 87 HOH HOH . F 4 HOH A 75 375 150 HOH HOH . F 4 HOH A 76 376 145 HOH HOH . F 4 HOH A 77 377 74 HOH HOH . F 4 HOH A 78 378 41 HOH HOH . F 4 HOH A 79 379 45 HOH HOH . F 4 HOH A 80 380 54 HOH HOH . F 4 HOH A 81 381 160 HOH HOH . F 4 HOH A 82 382 95 HOH HOH . F 4 HOH A 83 383 173 HOH HOH . F 4 HOH A 84 384 120 HOH HOH . F 4 HOH A 85 385 154 HOH HOH . F 4 HOH A 86 386 130 HOH HOH . F 4 HOH A 87 387 126 HOH HOH . F 4 HOH A 88 388 98 HOH HOH . F 4 HOH A 89 389 170 HOH HOH . F 4 HOH A 90 390 69 HOH HOH . F 4 HOH A 91 391 196 HOH HOH . F 4 HOH A 92 392 193 HOH HOH . F 4 HOH A 93 393 164 HOH HOH . F 4 HOH A 94 394 148 HOH HOH . F 4 HOH A 95 395 156 HOH HOH . F 4 HOH A 96 396 52 HOH HOH . F 4 HOH A 97 397 184 HOH HOH . F 4 HOH A 98 398 58 HOH HOH . F 4 HOH A 99 399 81 HOH HOH . F 4 HOH A 100 400 88 HOH HOH . F 4 HOH A 101 401 135 HOH HOH . F 4 HOH A 102 402 108 HOH HOH . F 4 HOH A 103 403 190 HOH HOH . F 4 HOH A 104 404 169 HOH HOH . F 4 HOH A 105 405 136 HOH HOH . F 4 HOH A 106 406 167 HOH HOH . F 4 HOH A 107 407 146 HOH HOH . F 4 HOH A 108 408 131 HOH HOH . F 4 HOH A 109 409 53 HOH HOH . G 4 HOH B 1 301 103 HOH HOH . G 4 HOH B 2 302 192 HOH HOH . G 4 HOH B 3 303 48 HOH HOH . G 4 HOH B 4 304 142 HOH HOH . G 4 HOH B 5 305 134 HOH HOH . G 4 HOH B 6 306 92 HOH HOH . G 4 HOH B 7 307 61 HOH HOH . G 4 HOH B 8 308 202 HOH HOH . G 4 HOH B 9 309 83 HOH HOH . G 4 HOH B 10 310 188 HOH HOH . G 4 HOH B 11 311 72 HOH HOH . G 4 HOH B 12 312 9 HOH HOH . G 4 HOH B 13 313 60 HOH HOH . G 4 HOH B 14 314 20 HOH HOH . G 4 HOH B 15 315 10 HOH HOH . G 4 HOH B 16 316 80 HOH HOH . G 4 HOH B 17 317 76 HOH HOH . G 4 HOH B 18 318 143 HOH HOH . G 4 HOH B 19 319 89 HOH HOH . G 4 HOH B 20 320 11 HOH HOH . G 4 HOH B 21 321 86 HOH HOH . G 4 HOH B 22 322 197 HOH HOH . G 4 HOH B 23 323 138 HOH HOH . G 4 HOH B 24 324 168 HOH HOH . G 4 HOH B 25 325 7 HOH HOH . G 4 HOH B 26 326 141 HOH HOH . G 4 HOH B 27 327 129 HOH HOH . G 4 HOH B 28 328 4 HOH HOH . G 4 HOH B 29 329 51 HOH HOH . G 4 HOH B 30 330 1 HOH HOH . G 4 HOH B 31 331 180 HOH HOH . G 4 HOH B 32 332 13 HOH HOH . G 4 HOH B 33 333 17 HOH HOH . G 4 HOH B 34 334 27 HOH HOH . G 4 HOH B 35 335 33 HOH HOH . G 4 HOH B 36 336 28 HOH HOH . G 4 HOH B 37 337 71 HOH HOH . G 4 HOH B 38 338 43 HOH HOH . G 4 HOH B 39 339 114 HOH HOH . G 4 HOH B 40 340 166 HOH HOH . G 4 HOH B 41 341 36 HOH HOH . G 4 HOH B 42 342 203 HOH HOH . G 4 HOH B 43 343 93 HOH HOH . G 4 HOH B 44 344 35 HOH HOH . G 4 HOH B 45 345 179 HOH HOH . G 4 HOH B 46 346 94 HOH HOH . G 4 HOH B 47 347 119 HOH HOH . G 4 HOH B 48 348 183 HOH HOH . G 4 HOH B 49 349 62 HOH HOH . G 4 HOH B 50 350 122 HOH HOH . G 4 HOH B 51 351 182 HOH HOH . G 4 HOH B 52 352 63 HOH HOH . G 4 HOH B 53 353 59 HOH HOH . G 4 HOH B 54 354 181 HOH HOH . G 4 HOH B 55 355 90 HOH HOH . G 4 HOH B 56 356 31 HOH HOH . G 4 HOH B 57 357 15 HOH HOH . G 4 HOH B 58 358 97 HOH HOH . G 4 HOH B 59 359 49 HOH HOH . G 4 HOH B 60 360 204 HOH HOH . G 4 HOH B 61 361 46 HOH HOH . G 4 HOH B 62 362 139 HOH HOH . G 4 HOH B 63 363 104 HOH HOH . G 4 HOH B 64 364 32 HOH HOH . G 4 HOH B 65 365 70 HOH HOH . G 4 HOH B 66 366 116 HOH HOH . G 4 HOH B 67 367 200 HOH HOH . G 4 HOH B 68 368 199 HOH HOH . G 4 HOH B 69 369 115 HOH HOH . G 4 HOH B 70 370 77 HOH HOH . G 4 HOH B 71 371 132 HOH HOH . G 4 HOH B 72 372 178 HOH HOH . G 4 HOH B 73 373 78 HOH HOH . G 4 HOH B 74 374 155 HOH HOH . G 4 HOH B 75 375 109 HOH HOH . G 4 HOH B 76 376 186 HOH HOH . G 4 HOH B 77 377 112 HOH HOH . G 4 HOH B 78 378 149 HOH HOH . G 4 HOH B 79 379 185 HOH HOH . G 4 HOH B 80 380 165 HOH HOH . G 4 HOH B 81 381 159 HOH HOH . G 4 HOH B 82 382 153 HOH HOH . G 4 HOH B 83 383 107 HOH HOH . G 4 HOH B 84 384 85 HOH HOH . G 4 HOH B 85 385 151 HOH HOH . G 4 HOH B 86 386 157 HOH HOH . G 4 HOH B 87 387 187 HOH HOH . G 4 HOH B 88 388 201 HOH HOH . G 4 HOH B 89 389 123 HOH HOH . G 4 HOH B 90 390 133 HOH HOH . G 4 HOH B 91 391 56 HOH HOH . G 4 HOH B 92 392 127 HOH HOH . G 4 HOH B 93 393 102 HOH HOH . G 4 HOH B 94 394 82 HOH HOH . G 4 HOH B 95 395 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.175 _atom_site.Cartn_y 17.801 _atom_site.Cartn_z -27.36 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #