data_5L4S # _model_server_result.job_id 9K4PWQoEEFTftstCpewV4g _model_server_result.datetime_utc '2025-02-18 09:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5L4S # _exptl.entry_id 5L4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.233 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-cyclocitral _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L4S _cell.length_a 60.113 _cell.length_b 65.612 _cell.length_c 94.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 O' _chem_comp.formula_weight 152.233 _chem_comp.id 6KX _chem_comp.mon_nstd_flag . _chem_comp.name beta-cyclocitral _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 6KX sing 1 n n C05 C04 6KX sing 2 n n C06 C07 6KX sing 3 n n C08 C04 6KX sing 4 n n C04 C09 6KX sing 5 n n C04 C03 6KX sing 6 n n C07 C02 6KX sing 7 n n C03 C02 6KX doub 8 n n C03 C10 6KX sing 9 n n C02 C01 6KX sing 10 n n C10 O11 6KX doub 11 n n C10 H1 6KX sing 12 n n C01 H3 6KX sing 13 n n C01 H4 6KX sing 14 n n C01 H5 6KX sing 15 n n C05 H8 6KX sing 16 n n C05 H9 6KX sing 17 n n C06 H10 6KX sing 18 n n C06 H11 6KX sing 19 n n C07 H12 6KX sing 20 n n C07 H13 6KX sing 21 n n C08 H14 6KX sing 22 n n C08 H15 6KX sing 23 n n C08 H16 6KX sing 24 n n C09 H17 6KX sing 25 n n C09 H18 6KX sing 26 n n C09 H19 6KX sing 27 n n # _atom_sites.entry_id 5L4S _atom_sites.fract_transf_matrix[1][1] 0.016635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6KX A 1 401 401 6KX LIG . C 3 NAP A 1 402 402 NAP NAP . D 4 HOH A 1 501 611 HOH HOH . D 4 HOH A 2 502 799 HOH HOH . D 4 HOH A 3 503 653 HOH HOH . D 4 HOH A 4 504 657 HOH HOH . D 4 HOH A 5 505 793 HOH HOH . D 4 HOH A 6 506 655 HOH HOH . D 4 HOH A 7 507 753 HOH HOH . D 4 HOH A 8 508 604 HOH HOH . D 4 HOH A 9 509 651 HOH HOH . D 4 HOH A 10 510 756 HOH HOH . D 4 HOH A 11 511 630 HOH HOH . D 4 HOH A 12 512 758 HOH HOH . D 4 HOH A 13 513 685 HOH HOH . D 4 HOH A 14 514 644 HOH HOH . D 4 HOH A 15 515 577 HOH HOH . D 4 HOH A 16 516 645 HOH HOH . D 4 HOH A 17 517 520 HOH HOH . D 4 HOH A 18 518 699 HOH HOH . D 4 HOH A 19 519 803 HOH HOH . D 4 HOH A 20 520 529 HOH HOH . D 4 HOH A 21 521 716 HOH HOH . D 4 HOH A 22 522 686 HOH HOH . D 4 HOH A 23 523 650 HOH HOH . D 4 HOH A 24 524 617 HOH HOH . D 4 HOH A 25 525 571 HOH HOH . D 4 HOH A 26 526 746 HOH HOH . D 4 HOH A 27 527 553 HOH HOH . D 4 HOH A 28 528 595 HOH HOH . D 4 HOH A 29 529 798 HOH HOH . D 4 HOH A 30 530 715 HOH HOH . D 4 HOH A 31 531 527 HOH HOH . D 4 HOH A 32 532 634 HOH HOH . D 4 HOH A 33 533 709 HOH HOH . D 4 HOH A 34 534 584 HOH HOH . D 4 HOH A 35 535 649 HOH HOH . D 4 HOH A 36 536 710 HOH HOH . D 4 HOH A 37 537 565 HOH HOH . D 4 HOH A 38 538 626 HOH HOH . D 4 HOH A 39 539 511 HOH HOH . D 4 HOH A 40 540 513 HOH HOH . D 4 HOH A 41 541 515 HOH HOH . D 4 HOH A 42 542 533 HOH HOH . D 4 HOH A 43 543 740 HOH HOH . D 4 HOH A 44 544 742 HOH HOH . D 4 HOH A 45 545 616 HOH HOH . D 4 HOH A 46 546 777 HOH HOH . D 4 HOH A 47 547 505 HOH HOH . D 4 HOH A 48 548 700 HOH HOH . D 4 HOH A 49 549 639 HOH HOH . D 4 HOH A 50 550 769 HOH HOH . D 4 HOH A 51 551 563 HOH HOH . D 4 HOH A 52 552 727 HOH HOH . D 4 HOH A 53 553 624 HOH HOH . D 4 HOH A 54 554 517 HOH HOH . D 4 HOH A 55 555 612 HOH HOH . D 4 HOH A 56 556 558 HOH HOH . D 4 HOH A 57 557 772 HOH HOH . D 4 HOH A 58 558 643 HOH HOH . D 4 HOH A 59 559 594 HOH HOH . D 4 HOH A 60 560 791 HOH HOH . D 4 HOH A 61 561 509 HOH HOH . D 4 HOH A 62 562 627 HOH HOH . D 4 HOH A 63 563 532 HOH HOH . D 4 HOH A 64 564 733 HOH HOH . D 4 HOH A 65 565 638 HOH HOH . D 4 HOH A 66 566 561 HOH HOH . D 4 HOH A 67 567 600 HOH HOH . D 4 HOH A 68 568 506 HOH HOH . D 4 HOH A 69 569 597 HOH HOH . D 4 HOH A 70 570 542 HOH HOH . D 4 HOH A 71 571 521 HOH HOH . D 4 HOH A 72 572 518 HOH HOH . D 4 HOH A 73 573 589 HOH HOH . D 4 HOH A 74 574 765 HOH HOH . D 4 HOH A 75 575 519 HOH HOH . D 4 HOH A 76 576 500 HOH HOH . D 4 HOH A 77 577 541 HOH HOH . D 4 HOH A 78 578 629 HOH HOH . D 4 HOH A 79 579 780 HOH HOH . D 4 HOH A 80 580 790 HOH HOH . D 4 HOH A 81 581 556 HOH HOH . D 4 HOH A 82 582 646 HOH HOH . D 4 HOH A 83 583 545 HOH HOH . D 4 HOH A 84 584 754 HOH HOH . D 4 HOH A 85 585 543 HOH HOH . D 4 HOH A 86 586 523 HOH HOH . D 4 HOH A 87 587 528 HOH HOH . D 4 HOH A 88 588 635 HOH HOH . D 4 HOH A 89 589 512 HOH HOH . D 4 HOH A 90 590 748 HOH HOH . D 4 HOH A 91 591 510 HOH HOH . D 4 HOH A 92 592 703 HOH HOH . D 4 HOH A 93 593 724 HOH HOH . D 4 HOH A 94 594 575 HOH HOH . D 4 HOH A 95 595 524 HOH HOH . D 4 HOH A 96 596 707 HOH HOH . D 4 HOH A 97 597 522 HOH HOH . D 4 HOH A 98 598 789 HOH HOH . D 4 HOH A 99 599 503 HOH HOH . D 4 HOH A 100 600 546 HOH HOH . D 4 HOH A 101 601 549 HOH HOH . D 4 HOH A 102 602 590 HOH HOH . D 4 HOH A 103 603 662 HOH HOH . D 4 HOH A 104 604 514 HOH HOH . D 4 HOH A 105 605 687 HOH HOH . D 4 HOH A 106 606 501 HOH HOH . D 4 HOH A 107 607 539 HOH HOH . D 4 HOH A 108 608 531 HOH HOH . D 4 HOH A 109 609 582 HOH HOH . D 4 HOH A 110 610 534 HOH HOH . D 4 HOH A 111 611 583 HOH HOH . D 4 HOH A 112 612 773 HOH HOH . D 4 HOH A 113 613 592 HOH HOH . D 4 HOH A 114 614 578 HOH HOH . D 4 HOH A 115 615 669 HOH HOH . D 4 HOH A 116 616 670 HOH HOH . D 4 HOH A 117 617 605 HOH HOH . D 4 HOH A 118 618 636 HOH HOH . D 4 HOH A 119 619 739 HOH HOH . D 4 HOH A 120 620 540 HOH HOH . D 4 HOH A 121 621 502 HOH HOH . D 4 HOH A 122 622 554 HOH HOH . D 4 HOH A 123 623 656 HOH HOH . D 4 HOH A 124 624 800 HOH HOH . D 4 HOH A 125 625 596 HOH HOH . D 4 HOH A 126 626 680 HOH HOH . D 4 HOH A 127 627 598 HOH HOH . D 4 HOH A 128 628 508 HOH HOH . D 4 HOH A 129 629 782 HOH HOH . D 4 HOH A 130 630 567 HOH HOH . D 4 HOH A 131 631 633 HOH HOH . D 4 HOH A 132 632 574 HOH HOH . D 4 HOH A 133 633 566 HOH HOH . D 4 HOH A 134 634 668 HOH HOH . D 4 HOH A 135 635 581 HOH HOH . D 4 HOH A 136 636 729 HOH HOH . D 4 HOH A 137 637 767 HOH HOH . D 4 HOH A 138 638 792 HOH HOH . D 4 HOH A 139 639 504 HOH HOH . D 4 HOH A 140 640 603 HOH HOH . D 4 HOH A 141 641 619 HOH HOH . D 4 HOH A 142 642 614 HOH HOH . D 4 HOH A 143 643 778 HOH HOH . D 4 HOH A 144 644 622 HOH HOH . D 4 HOH A 145 645 797 HOH HOH . D 4 HOH A 146 646 526 HOH HOH . D 4 HOH A 147 647 692 HOH HOH . D 4 HOH A 148 648 572 HOH HOH . D 4 HOH A 149 649 530 HOH HOH . D 4 HOH A 150 650 551 HOH HOH . D 4 HOH A 151 651 507 HOH HOH . D 4 HOH A 152 652 762 HOH HOH . D 4 HOH A 153 653 550 HOH HOH . D 4 HOH A 154 654 573 HOH HOH . D 4 HOH A 155 655 569 HOH HOH . D 4 HOH A 156 656 537 HOH HOH . D 4 HOH A 157 657 666 HOH HOH . D 4 HOH A 158 658 580 HOH HOH . D 4 HOH A 159 659 606 HOH HOH . D 4 HOH A 160 660 593 HOH HOH . D 4 HOH A 161 661 788 HOH HOH . D 4 HOH A 162 662 607 HOH HOH . D 4 HOH A 163 663 783 HOH HOH . D 4 HOH A 164 664 750 HOH HOH . D 4 HOH A 165 665 557 HOH HOH . D 4 HOH A 166 666 652 HOH HOH . D 4 HOH A 167 667 548 HOH HOH . D 4 HOH A 168 668 693 HOH HOH . D 4 HOH A 169 669 609 HOH HOH . D 4 HOH A 170 670 559 HOH HOH . D 4 HOH A 171 671 725 HOH HOH . D 4 HOH A 172 672 755 HOH HOH . D 4 HOH A 173 673 562 HOH HOH . D 4 HOH A 174 674 744 HOH HOH . D 4 HOH A 175 675 720 HOH HOH . D 4 HOH A 176 676 618 HOH HOH . D 4 HOH A 177 677 608 HOH HOH . D 4 HOH A 178 678 731 HOH HOH . D 4 HOH A 179 679 610 HOH HOH . D 4 HOH A 180 680 665 HOH HOH . D 4 HOH A 181 681 555 HOH HOH . D 4 HOH A 182 682 721 HOH HOH . D 4 HOH A 183 683 560 HOH HOH . D 4 HOH A 184 684 536 HOH HOH . D 4 HOH A 185 685 585 HOH HOH . D 4 HOH A 186 686 642 HOH HOH . D 4 HOH A 187 687 628 HOH HOH . D 4 HOH A 188 688 702 HOH HOH . D 4 HOH A 189 689 681 HOH HOH . D 4 HOH A 190 690 654 HOH HOH . D 4 HOH A 191 691 568 HOH HOH . D 4 HOH A 192 692 701 HOH HOH . D 4 HOH A 193 693 641 HOH HOH . D 4 HOH A 194 694 711 HOH HOH . D 4 HOH A 195 695 516 HOH HOH . D 4 HOH A 196 696 728 HOH HOH . D 4 HOH A 197 697 547 HOH HOH . D 4 HOH A 198 698 749 HOH HOH . D 4 HOH A 199 699 690 HOH HOH . D 4 HOH A 200 700 682 HOH HOH . D 4 HOH A 201 701 688 HOH HOH . D 4 HOH A 202 702 647 HOH HOH . D 4 HOH A 203 703 679 HOH HOH . D 4 HOH A 204 704 586 HOH HOH . D 4 HOH A 205 705 678 HOH HOH . D 4 HOH A 206 706 564 HOH HOH . D 4 HOH A 207 707 673 HOH HOH . D 4 HOH A 208 708 648 HOH HOH . D 4 HOH A 209 709 579 HOH HOH . D 4 HOH A 210 710 588 HOH HOH . D 4 HOH A 211 711 676 HOH HOH . D 4 HOH A 212 712 807 HOH HOH . D 4 HOH A 213 713 544 HOH HOH . D 4 HOH A 214 714 525 HOH HOH . D 4 HOH A 215 715 775 HOH HOH . D 4 HOH A 216 716 535 HOH HOH . D 4 HOH A 217 717 659 HOH HOH . D 4 HOH A 218 718 717 HOH HOH . D 4 HOH A 219 719 602 HOH HOH . D 4 HOH A 220 720 689 HOH HOH . D 4 HOH A 221 721 587 HOH HOH . D 4 HOH A 222 722 637 HOH HOH . D 4 HOH A 223 723 697 HOH HOH . D 4 HOH A 224 724 552 HOH HOH . D 4 HOH A 225 725 570 HOH HOH . D 4 HOH A 226 726 631 HOH HOH . D 4 HOH A 227 727 751 HOH HOH . D 4 HOH A 228 728 599 HOH HOH . D 4 HOH A 229 729 674 HOH HOH . D 4 HOH A 230 730 683 HOH HOH . D 4 HOH A 231 731 576 HOH HOH . D 4 HOH A 232 732 722 HOH HOH . D 4 HOH A 233 733 591 HOH HOH . D 4 HOH A 234 734 658 HOH HOH . D 4 HOH A 235 735 784 HOH HOH . D 4 HOH A 236 736 632 HOH HOH . D 4 HOH A 237 737 708 HOH HOH . D 4 HOH A 238 738 675 HOH HOH . D 4 HOH A 239 739 613 HOH HOH . D 4 HOH A 240 740 735 HOH HOH . D 4 HOH A 241 741 623 HOH HOH . D 4 HOH A 242 742 768 HOH HOH . D 4 HOH A 243 743 696 HOH HOH . D 4 HOH A 244 744 714 HOH HOH . D 4 HOH A 245 745 719 HOH HOH . D 4 HOH A 246 746 794 HOH HOH . D 4 HOH A 247 747 738 HOH HOH . D 4 HOH A 248 748 698 HOH HOH . D 4 HOH A 249 749 723 HOH HOH . D 4 HOH A 250 750 706 HOH HOH . D 4 HOH A 251 751 747 HOH HOH . D 4 HOH A 252 752 804 HOH HOH . D 4 HOH A 253 753 786 HOH HOH . D 4 HOH A 254 754 805 HOH HOH . D 4 HOH A 255 755 736 HOH HOH . D 4 HOH A 256 756 640 HOH HOH . D 4 HOH A 257 757 660 HOH HOH . D 4 HOH A 258 758 795 HOH HOH . D 4 HOH A 259 759 713 HOH HOH . D 4 HOH A 260 760 785 HOH HOH . D 4 HOH A 261 761 776 HOH HOH . D 4 HOH A 262 762 671 HOH HOH . D 4 HOH A 263 763 781 HOH HOH . D 4 HOH A 264 764 763 HOH HOH . D 4 HOH A 265 765 743 HOH HOH . D 4 HOH A 266 766 615 HOH HOH . D 4 HOH A 267 767 806 HOH HOH . D 4 HOH A 268 768 726 HOH HOH . D 4 HOH A 269 769 672 HOH HOH . D 4 HOH A 270 770 757 HOH HOH . D 4 HOH A 271 771 712 HOH HOH . D 4 HOH A 272 772 796 HOH HOH . D 4 HOH A 273 773 620 HOH HOH . D 4 HOH A 274 774 771 HOH HOH . D 4 HOH A 275 775 625 HOH HOH . D 4 HOH A 276 776 759 HOH HOH . D 4 HOH A 277 777 802 HOH HOH . D 4 HOH A 278 778 730 HOH HOH . D 4 HOH A 279 779 694 HOH HOH . D 4 HOH A 280 780 718 HOH HOH . D 4 HOH A 281 781 787 HOH HOH . D 4 HOH A 282 782 734 HOH HOH . D 4 HOH A 283 783 667 HOH HOH . D 4 HOH A 284 784 760 HOH HOH . D 4 HOH A 285 785 684 HOH HOH . D 4 HOH A 286 786 661 HOH HOH . D 4 HOH A 287 787 705 HOH HOH . D 4 HOH A 288 788 621 HOH HOH . D 4 HOH A 289 789 704 HOH HOH . D 4 HOH A 290 790 801 HOH HOH . D 4 HOH A 291 791 538 HOH HOH . D 4 HOH A 292 792 737 HOH HOH . D 4 HOH A 293 793 691 HOH HOH . D 4 HOH A 294 794 745 HOH HOH . D 4 HOH A 295 795 677 HOH HOH . D 4 HOH A 296 796 741 HOH HOH . D 4 HOH A 297 797 764 HOH HOH . D 4 HOH A 298 798 766 HOH HOH . D 4 HOH A 299 799 779 HOH HOH . D 4 HOH A 300 800 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6KX . . . B 2 -11.731 -15.279 10.57 1 17.23 ? C10 6KX 401 A 1 HETATM 2 C C01 6KX . . . B 2 -8.825 -14.432 11.027 1 17.79 ? C01 6KX 401 A 1 HETATM 3 C C02 6KX . . . B 2 -9.372 -14.299 9.604 1 17.66 ? C02 6KX 401 A 1 HETATM 4 C C03 6KX . . . B 2 -10.876 -14.673 9.397 1 18.04 ? C03 6KX 401 A 1 HETATM 5 C C04 6KX . . . B 2 -11.387 -14.707 8.027 1 19.06 ? C04 6KX 401 A 1 HETATM 6 C C05 6KX . . . B 2 -10.47 -13.787 7.011 1 17.39 ? C05 6KX 401 A 1 HETATM 7 C C06 6KX . . . B 2 -9.103 -14.039 7.087 1 16.43 ? C06 6KX 401 A 1 HETATM 8 C C07 6KX . . . B 2 -8.551 -13.655 8.584 1 16.83 ? C07 6KX 401 A 1 HETATM 9 C C08 6KX . . . B 2 -11.538 -16.149 7.431 1 19.87 ? C08 6KX 401 A 1 HETATM 10 C C09 6KX . . . B 2 -12.802 -14.113 8.052 1 20.49 ? C09 6KX 401 A 1 HETATM 11 O O11 6KX . . . B 2 -11.311 -16.472 10.746 1 18.96 ? O11 6KX 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 11 #