data_5L4V
#
_model_server_result.job_id            1ShqlzzT5V14agZJy84KRA 
_model_server_result.datetime_utc      '2024-11-18 14:48:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l4v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    5L4V 
#
_exptl.entry_id    5L4V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              262.343 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl 3-deoxy-alpha-D-mannopyranoside' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.02 
_cell.angle_gamma         90 
_cell.entry_id            5L4V 
_cell.length_a            44.94 
_cell.length_b            95.34 
_cell.length_c            70.73 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L4V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G 1 1 
B,E,H 2 1 
C,F,I 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C13 H26 O5' 
_chem_comp.formula_weight    262.343 
_chem_comp.id                6KW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'heptyl 3-deoxy-alpha-D-mannopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '3-Deoxy-Heptylmannoside;heptyl 3-deoxy-alpha-D-mannoside;heptyl 3-deoxy-D-mannoside;heptyl 3-deoxy-mannoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C6 6KW sing 1 n n 
O5 C1 6KW sing 2 n n 
O5 C5 6KW sing 3 n n 
CAP CAQ 6KW sing 4 n n 
CAP CAO 6KW sing 5 n n 
CAR CAQ 6KW sing 6 n n 
CAN CAM 6KW sing 7 n n 
CAN CAO 6KW sing 8 n n 
CAL CAM 6KW sing 9 n n 
CAL O1 6KW sing 10 n n 
C1 O1 6KW sing 11 n n 
C1 C2 6KW sing 12 n n 
C6 C5 6KW sing 13 n n 
O2 C2 6KW sing 14 n n 
C5 C4 6KW sing 15 n n 
C2 C3 6KW sing 16 n n 
C4 C3 6KW sing 17 n n 
C4 O4 6KW sing 18 n n 
C4 H4 6KW sing 19 n n 
C5 H5 6KW sing 20 n n 
C6 H61 6KW sing 21 n n 
C6 H62 6KW sing 22 n n 
C3 H3 6KW sing 23 n n 
C3 H6 6KW sing 24 n n 
CAR H7 6KW sing 25 n n 
CAR H8 6KW sing 26 n n 
CAR H9 6KW sing 27 n n 
CAQ H10 6KW sing 28 n n 
CAQ H11 6KW sing 29 n n 
CAP H12 6KW sing 30 n n 
CAP H13 6KW sing 31 n n 
CAO H14 6KW sing 32 n n 
CAO H15 6KW sing 33 n n 
CAN H16 6KW sing 34 n n 
CAN H17 6KW sing 35 n n 
CAM H18 6KW sing 36 n n 
CAM H19 6KW sing 37 n n 
CAL H20 6KW sing 38 n n 
CAL H21 6KW sing 39 n n 
C1 H1 6KW sing 40 n n 
O6 HO6 6KW sing 41 n n 
O4 HO4 6KW sing 42 n n 
C2 H2 6KW sing 43 n n 
O2 HO2 6KW sing 44 n n 
#
_atom_sites.entry_id                     5L4V 
_atom_sites.fract_transf_matrix[1][1]    0.022252 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005971 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010489 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014638 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 6KW A 1 301 301 6KW DRG . 
E 2 6KW B 1 301 301 6KW DRG . 
F 2 6KW C 1 301 301 6KW DRG . 
G 3 HOH A 1 401 9 HOH HOH . 
G 3 HOH A 2 402 55 HOH HOH . 
G 3 HOH A 3 403 15 HOH HOH . 
G 3 HOH A 4 404 1 HOH HOH . 
G 3 HOH A 5 405 19 HOH HOH . 
G 3 HOH A 6 406 37 HOH HOH . 
G 3 HOH A 7 407 20 HOH HOH . 
G 3 HOH A 8 408 23 HOH HOH . 
G 3 HOH A 9 409 52 HOH HOH . 
G 3 HOH A 10 410 40 HOH HOH . 
G 3 HOH A 11 411 54 HOH HOH . 
G 3 HOH A 12 412 48 HOH HOH . 
G 3 HOH A 13 413 53 HOH HOH . 
G 3 HOH A 14 414 7 HOH HOH . 
G 3 HOH A 15 415 38 HOH HOH . 
G 3 HOH A 16 416 21 HOH HOH . 
G 3 HOH A 17 417 22 HOH HOH . 
G 3 HOH A 18 418 49 HOH HOH . 
G 3 HOH A 19 419 18 HOH HOH . 
G 3 HOH A 20 420 29 HOH HOH . 
G 3 HOH A 21 421 8 HOH HOH . 
H 3 HOH B 1 401 12 HOH HOH . 
H 3 HOH B 2 402 2 HOH HOH . 
H 3 HOH B 3 403 34 HOH HOH . 
H 3 HOH B 4 404 56 HOH HOH . 
H 3 HOH B 5 405 46 HOH HOH . 
H 3 HOH B 6 406 11 HOH HOH . 
H 3 HOH B 7 407 6 HOH HOH . 
H 3 HOH B 8 408 30 HOH HOH . 
H 3 HOH B 9 409 5 HOH HOH . 
H 3 HOH B 10 410 13 HOH HOH . 
H 3 HOH B 11 411 17 HOH HOH . 
H 3 HOH B 12 412 41 HOH HOH . 
H 3 HOH B 13 413 16 HOH HOH . 
H 3 HOH B 14 414 27 HOH HOH . 
H 3 HOH B 15 415 32 HOH HOH . 
H 3 HOH B 16 416 44 HOH HOH . 
H 3 HOH B 17 417 14 HOH HOH . 
H 3 HOH B 18 418 39 HOH HOH . 
H 3 HOH B 19 419 42 HOH HOH . 
H 3 HOH B 20 420 10 HOH HOH . 
H 3 HOH B 21 421 43 HOH HOH . 
H 3 HOH B 22 422 26 HOH HOH . 
H 3 HOH B 23 423 31 HOH HOH . 
H 3 HOH B 24 424 28 HOH HOH . 
H 3 HOH B 25 425 51 HOH HOH . 
H 3 HOH B 26 426 47 HOH HOH . 
I 3 HOH C 1 401 57 HOH HOH . 
I 3 HOH C 2 402 4 HOH HOH . 
I 3 HOH C 3 403 35 HOH HOH . 
I 3 HOH C 4 404 25 HOH HOH . 
I 3 HOH C 5 405 50 HOH HOH . 
I 3 HOH C 6 406 45 HOH HOH . 
I 3 HOH C 7 407 3 HOH HOH . 
I 3 HOH C 8 408 33 HOH HOH . 
I 3 HOH C 9 409 36 HOH HOH . 
I 3 HOH C 10 410 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 6KW . . . F 2 60.345 -27.763 127.096 1 27.23 ? C4 6KW 301 C 1 
HETATM 2 C C5 6KW . . . F 2 60.017 -28.249 128.537 1 28.51 ? C5 6KW 301 C 1 
HETATM 3 C C6 6KW . . . F 2 61.279 -28.395 129.384 1 28.77 ? C6 6KW 301 C 1 
HETATM 4 C C3 6KW . . . F 2 59.052 -27.517 126.303 1 27.37 ? C3 6KW 301 C 1 
HETATM 5 C CAR 6KW . . . F 2 56.876 -33.816 134.431 1 34 ? CAR 6KW 301 C 1 
HETATM 6 C CAQ 6KW . . . F 2 57.213 -33.37 133.006 1 31.99 ? CAQ 6KW 301 C 1 
HETATM 7 C CAP 6KW . . . F 2 56.19 -32.32 132.58 1 31.78 ? CAP 6KW 301 C 1 
HETATM 8 C CAO 6KW . . . F 2 56.363 -31.966 131.106 1 30.32 ? CAO 6KW 301 C 1 
HETATM 9 C CAN 6KW . . . F 2 55.532 -30.708 130.82 1 30.01 ? CAN 6KW 301 C 1 
HETATM 10 C CAM 6KW . . . F 2 55.863 -30.145 129.432 1 29.23 ? CAM 6KW 301 C 1 
HETATM 11 C CAL 6KW . . . F 2 56.665 -28.86 129.596 1 29.5 ? CAL 6KW 301 C 1 
HETATM 12 O O1 6KW . . . F 2 57.026 -28.32 128.334 1 29.77 ? O1 6KW 301 C 1 
HETATM 13 C C1 6KW . . . F 2 57.835 -27.132 128.481 1 29.08 ? C1 6KW 301 C 1 
HETATM 14 O O5 6KW . . . F 2 59.113 -27.307 129.201 1 29.03 ? O5 6KW 301 C 1 
HETATM 15 O O6 6KW . . . F 2 61.889 -27.12 129.577 1 28.88 ? O6 6KW 301 C 1 
HETATM 16 O O4 6KW . . . F 2 61.126 -28.727 126.406 1 26.72 ? O4 6KW 301 C 1 
HETATM 17 C C2 6KW . . . F 2 58.108 -26.574 127.073 1 27.8 ? C2 6KW 301 C 1 
HETATM 18 O O2 6KW . . . F 2 58.711 -25.283 127.191 1 26.33 ? O2 6KW 301 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#