data_5L4Z # _model_server_result.job_id zR27Dy1xcd9jgzgz48XDhA _model_server_result.datetime_utc '2024-11-04 22:53:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":611}' # _entry.id 5L4Z # _exptl.entry_id 5L4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L4Z _cell.length_a 91.323 _cell.length_b 126.503 _cell.length_c 130.515 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5L4Z _atom_sites.fract_transf_matrix[1][1] 0.01095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 1 GOL GOL . C 2 GOL A 1 602 2 GOL GOL . D 2 GOL A 1 603 3 GOL GOL . E 2 GOL A 1 604 4 GOL GOL . F 2 GOL A 1 605 6 GOL GOL . G 2 GOL A 1 606 7 GOL GOL . H 2 GOL A 1 607 9 GOL GOL . I 2 GOL A 1 608 10 GOL GOL . J 2 GOL A 1 609 11 GOL GOL . K 2 GOL A 1 610 12 GOL GOL . L 2 GOL A 1 611 13 GOL GOL . M 2 GOL A 1 612 14 GOL GOL . N 2 GOL A 1 613 15 GOL GOL . O 3 HOH A 1 701 136 HOH HOH . O 3 HOH A 2 702 179 HOH HOH . O 3 HOH A 3 703 120 HOH HOH . O 3 HOH A 4 704 104 HOH HOH . O 3 HOH A 5 705 213 HOH HOH . O 3 HOH A 6 706 225 HOH HOH . O 3 HOH A 7 707 133 HOH HOH . O 3 HOH A 8 708 20 HOH HOH . O 3 HOH A 9 709 86 HOH HOH . O 3 HOH A 10 710 199 HOH HOH . O 3 HOH A 11 711 113 HOH HOH . O 3 HOH A 12 712 115 HOH HOH . O 3 HOH A 13 713 14 HOH HOH . O 3 HOH A 14 714 209 HOH HOH . O 3 HOH A 15 715 117 HOH HOH . O 3 HOH A 16 716 63 HOH HOH . O 3 HOH A 17 717 142 HOH HOH . O 3 HOH A 18 718 180 HOH HOH . O 3 HOH A 19 719 96 HOH HOH . O 3 HOH A 20 720 71 HOH HOH . O 3 HOH A 21 721 135 HOH HOH . O 3 HOH A 22 722 17 HOH HOH . O 3 HOH A 23 723 23 HOH HOH . O 3 HOH A 24 724 68 HOH HOH . O 3 HOH A 25 725 134 HOH HOH . O 3 HOH A 26 726 69 HOH HOH . O 3 HOH A 27 727 106 HOH HOH . O 3 HOH A 28 728 33 HOH HOH . O 3 HOH A 29 729 112 HOH HOH . O 3 HOH A 30 730 80 HOH HOH . O 3 HOH A 31 731 229 HOH HOH . O 3 HOH A 32 732 232 HOH HOH . O 3 HOH A 33 733 43 HOH HOH . O 3 HOH A 34 734 38 HOH HOH . O 3 HOH A 35 735 57 HOH HOH . O 3 HOH A 36 736 21 HOH HOH . O 3 HOH A 37 737 26 HOH HOH . O 3 HOH A 38 738 83 HOH HOH . O 3 HOH A 39 739 171 HOH HOH . O 3 HOH A 40 740 12 HOH HOH . O 3 HOH A 41 741 89 HOH HOH . O 3 HOH A 42 742 94 HOH HOH . O 3 HOH A 43 743 131 HOH HOH . O 3 HOH A 44 744 140 HOH HOH . O 3 HOH A 45 745 35 HOH HOH . O 3 HOH A 46 746 32 HOH HOH . O 3 HOH A 47 747 103 HOH HOH . O 3 HOH A 48 748 128 HOH HOH . O 3 HOH A 49 749 107 HOH HOH . O 3 HOH A 50 750 54 HOH HOH . O 3 HOH A 51 751 49 HOH HOH . O 3 HOH A 52 752 72 HOH HOH . O 3 HOH A 53 753 65 HOH HOH . O 3 HOH A 54 754 79 HOH HOH . O 3 HOH A 55 755 59 HOH HOH . O 3 HOH A 56 756 163 HOH HOH . O 3 HOH A 57 757 7 HOH HOH . O 3 HOH A 58 758 141 HOH HOH . O 3 HOH A 59 759 101 HOH HOH . O 3 HOH A 60 760 207 HOH HOH . O 3 HOH A 61 761 158 HOH HOH . O 3 HOH A 62 762 51 HOH HOH . O 3 HOH A 63 763 138 HOH HOH . O 3 HOH A 64 764 19 HOH HOH . O 3 HOH A 65 765 218 HOH HOH . O 3 HOH A 66 766 48 HOH HOH . O 3 HOH A 67 767 50 HOH HOH . O 3 HOH A 68 768 8 HOH HOH . O 3 HOH A 69 769 157 HOH HOH . O 3 HOH A 70 770 58 HOH HOH . O 3 HOH A 71 771 37 HOH HOH . O 3 HOH A 72 772 143 HOH HOH . O 3 HOH A 73 773 24 HOH HOH . O 3 HOH A 74 774 11 HOH HOH . O 3 HOH A 75 775 27 HOH HOH . O 3 HOH A 76 776 123 HOH HOH . O 3 HOH A 77 777 166 HOH HOH . O 3 HOH A 78 778 39 HOH HOH . O 3 HOH A 79 779 85 HOH HOH . O 3 HOH A 80 780 4 HOH HOH . O 3 HOH A 81 781 154 HOH HOH . O 3 HOH A 82 782 161 HOH HOH . O 3 HOH A 83 783 219 HOH HOH . O 3 HOH A 84 784 73 HOH HOH . O 3 HOH A 85 785 1 HOH HOH . O 3 HOH A 86 786 200 HOH HOH . O 3 HOH A 87 787 110 HOH HOH . O 3 HOH A 88 788 25 HOH HOH . O 3 HOH A 89 789 167 HOH HOH . O 3 HOH A 90 790 148 HOH HOH . O 3 HOH A 91 791 28 HOH HOH . O 3 HOH A 92 792 53 HOH HOH . O 3 HOH A 93 793 56 HOH HOH . O 3 HOH A 94 794 30 HOH HOH . O 3 HOH A 95 795 187 HOH HOH . O 3 HOH A 96 796 70 HOH HOH . O 3 HOH A 97 797 41 HOH HOH . O 3 HOH A 98 798 205 HOH HOH . O 3 HOH A 99 799 111 HOH HOH . O 3 HOH A 100 800 189 HOH HOH . O 3 HOH A 101 801 64 HOH HOH . O 3 HOH A 102 802 61 HOH HOH . O 3 HOH A 103 803 170 HOH HOH . O 3 HOH A 104 804 191 HOH HOH . O 3 HOH A 105 805 231 HOH HOH . O 3 HOH A 106 806 208 HOH HOH . O 3 HOH A 107 807 192 HOH HOH . O 3 HOH A 108 808 137 HOH HOH . O 3 HOH A 109 809 82 HOH HOH . O 3 HOH A 110 810 44 HOH HOH . O 3 HOH A 111 811 29 HOH HOH . O 3 HOH A 112 812 9 HOH HOH . O 3 HOH A 113 813 74 HOH HOH . O 3 HOH A 114 814 99 HOH HOH . O 3 HOH A 115 815 34 HOH HOH . O 3 HOH A 116 816 87 HOH HOH . O 3 HOH A 117 817 206 HOH HOH . O 3 HOH A 118 818 139 HOH HOH . O 3 HOH A 119 819 220 HOH HOH . O 3 HOH A 120 820 102 HOH HOH . O 3 HOH A 121 821 216 HOH HOH . O 3 HOH A 122 822 177 HOH HOH . O 3 HOH A 123 823 2 HOH HOH . O 3 HOH A 124 824 66 HOH HOH . O 3 HOH A 125 825 125 HOH HOH . O 3 HOH A 126 826 5 HOH HOH . O 3 HOH A 127 827 121 HOH HOH . O 3 HOH A 128 828 212 HOH HOH . O 3 HOH A 129 829 160 HOH HOH . O 3 HOH A 130 830 42 HOH HOH . O 3 HOH A 131 831 88 HOH HOH . O 3 HOH A 132 832 228 HOH HOH . O 3 HOH A 133 833 155 HOH HOH . O 3 HOH A 134 834 15 HOH HOH . O 3 HOH A 135 835 18 HOH HOH . O 3 HOH A 136 836 221 HOH HOH . O 3 HOH A 137 837 224 HOH HOH . O 3 HOH A 138 838 90 HOH HOH . O 3 HOH A 139 839 78 HOH HOH . O 3 HOH A 140 840 132 HOH HOH . O 3 HOH A 141 841 114 HOH HOH . O 3 HOH A 142 842 77 HOH HOH . O 3 HOH A 143 843 190 HOH HOH . O 3 HOH A 144 844 52 HOH HOH . O 3 HOH A 145 845 47 HOH HOH . O 3 HOH A 146 846 75 HOH HOH . O 3 HOH A 147 847 165 HOH HOH . O 3 HOH A 148 848 119 HOH HOH . O 3 HOH A 149 849 92 HOH HOH . O 3 HOH A 150 850 6 HOH HOH . O 3 HOH A 151 851 173 HOH HOH . O 3 HOH A 152 852 230 HOH HOH . O 3 HOH A 153 853 81 HOH HOH . O 3 HOH A 154 854 109 HOH HOH . O 3 HOH A 155 855 10 HOH HOH . O 3 HOH A 156 856 46 HOH HOH . O 3 HOH A 157 857 118 HOH HOH . O 3 HOH A 158 858 175 HOH HOH . O 3 HOH A 159 859 76 HOH HOH . O 3 HOH A 160 860 202 HOH HOH . O 3 HOH A 161 861 204 HOH HOH . O 3 HOH A 162 862 210 HOH HOH . O 3 HOH A 163 863 201 HOH HOH . O 3 HOH A 164 864 181 HOH HOH . O 3 HOH A 165 865 203 HOH HOH . O 3 HOH A 166 866 145 HOH HOH . O 3 HOH A 167 867 188 HOH HOH . O 3 HOH A 168 868 62 HOH HOH . O 3 HOH A 169 869 198 HOH HOH . O 3 HOH A 170 870 31 HOH HOH . O 3 HOH A 171 871 91 HOH HOH . O 3 HOH A 172 872 195 HOH HOH . O 3 HOH A 173 873 45 HOH HOH . O 3 HOH A 174 874 174 HOH HOH . O 3 HOH A 175 875 93 HOH HOH . O 3 HOH A 176 876 95 HOH HOH . O 3 HOH A 177 877 164 HOH HOH . O 3 HOH A 178 878 127 HOH HOH . O 3 HOH A 179 879 226 HOH HOH . O 3 HOH A 180 880 116 HOH HOH . O 3 HOH A 181 881 169 HOH HOH . O 3 HOH A 182 882 98 HOH HOH . O 3 HOH A 183 883 149 HOH HOH . O 3 HOH A 184 884 3 HOH HOH . O 3 HOH A 185 885 124 HOH HOH . O 3 HOH A 186 886 40 HOH HOH . O 3 HOH A 187 887 183 HOH HOH . O 3 HOH A 188 888 153 HOH HOH . O 3 HOH A 189 889 144 HOH HOH . O 3 HOH A 190 890 223 HOH HOH . O 3 HOH A 191 891 178 HOH HOH . O 3 HOH A 192 892 215 HOH HOH . O 3 HOH A 193 893 197 HOH HOH . O 3 HOH A 194 894 227 HOH HOH . O 3 HOH A 195 895 156 HOH HOH . O 3 HOH A 196 896 22 HOH HOH . O 3 HOH A 197 897 168 HOH HOH . O 3 HOH A 198 898 84 HOH HOH . O 3 HOH A 199 899 147 HOH HOH . O 3 HOH A 200 900 196 HOH HOH . O 3 HOH A 201 901 126 HOH HOH . O 3 HOH A 202 902 214 HOH HOH . O 3 HOH A 203 903 100 HOH HOH . O 3 HOH A 204 904 211 HOH HOH . O 3 HOH A 205 905 55 HOH HOH . O 3 HOH A 206 906 152 HOH HOH . O 3 HOH A 207 907 186 HOH HOH . O 3 HOH A 208 908 130 HOH HOH . O 3 HOH A 209 909 108 HOH HOH . O 3 HOH A 210 910 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 2 27.882 -2.132 -12.675 1 75.55 ? C1 GOL 611 A 1 HETATM 2 O O1 GOL . . . L 2 26.989 -1.033 -12.93 1 71.64 ? O1 GOL 611 A 1 HETATM 3 C C2 GOL . . . L 2 27.617 -2.767 -11.309 1 73.41 ? C2 GOL 611 A 1 HETATM 4 O O2 GOL . . . L 2 26.274 -2.483 -10.908 1 74.81 ? O2 GOL 611 A 1 HETATM 5 C C3 GOL . . . L 2 27.784 -4.288 -11.317 1 74.18 ? C3 GOL 611 A 1 HETATM 6 O O3 GOL . . . L 2 28.987 -4.715 -11.972 1 72.13 ? O3 GOL 611 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #