data_5L57
#
_model_server_result.job_id            Fip3sA-lK0iN3_EMu1Obrg 
_model_server_result.datetime_utc      '2024-11-30 01:05:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5L57 
#
_exptl.entry_id    5L57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L57 
_cell.length_a            72.866 
_cell.length_b            72.866 
_cell.length_c            182.642 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_557 y,x,-z+2 0 1 0 1 0 0 0 0 -1 0 0 365.284 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 314 n n 
PA O2A NDP sing 315 n n 
PA O5B NDP sing 316 n n 
PA O3 NDP sing 317 n n 
O2A HOA2 NDP sing 318 n n 
O5B C5B NDP sing 319 n n 
C5B C4B NDP sing 320 n n 
C5B H51A NDP sing 321 n n 
C5B H52A NDP sing 322 n n 
C4B O4B NDP sing 323 n n 
C4B C3B NDP sing 324 n n 
C4B H4B NDP sing 325 n n 
O4B C1B NDP sing 326 n n 
C3B O3B NDP sing 327 n n 
C3B C2B NDP sing 328 n n 
C3B H3B NDP sing 329 n n 
O3B HO3A NDP sing 330 n n 
C2B O2B NDP sing 331 n n 
C2B C1B NDP sing 332 n n 
C2B H2B NDP sing 333 n n 
O2B P2B NDP sing 334 n n 
C1B N9A NDP sing 335 n n 
C1B H1B NDP sing 336 n n 
N9A C8A NDP sing 337 n y 
N9A C4A NDP sing 338 n y 
C8A N7A NDP doub 339 n y 
C8A H8A NDP sing 340 n n 
N7A C5A NDP sing 341 n y 
C5A C6A NDP sing 342 n y 
C5A C4A NDP doub 343 n y 
C6A N6A NDP sing 344 n n 
C6A N1A NDP doub 345 n y 
N6A H61A NDP sing 346 n n 
N6A H62A NDP sing 347 n n 
N1A C2A NDP sing 348 n y 
C2A N3A NDP doub 349 n y 
C2A H2A NDP sing 350 n n 
N3A C4A NDP sing 351 n y 
O3 PN NDP sing 352 n n 
PN O1N NDP doub 353 n n 
PN O2N NDP sing 354 n n 
PN O5D NDP sing 355 n n 
O2N H21N NDP sing 356 n n 
O5D C5D NDP sing 357 n n 
C5D C4D NDP sing 358 n n 
C5D H51N NDP sing 359 n n 
C5D H52N NDP sing 360 n n 
C4D O4D NDP sing 361 n n 
C4D C3D NDP sing 362 n n 
C4D H4D NDP sing 363 n n 
O4D C1D NDP sing 364 n n 
C3D O3D NDP sing 365 n n 
C3D C2D NDP sing 366 n n 
C3D H3D NDP sing 367 n n 
O3D HO3N NDP sing 368 n n 
C2D O2D NDP sing 369 n n 
C2D C1D NDP sing 370 n n 
C2D H2D NDP sing 371 n n 
O2D HO2N NDP sing 372 n n 
C1D N1N NDP sing 373 n n 
C1D H1D NDP sing 374 n n 
N1N C2N NDP sing 375 n n 
N1N C6N NDP sing 376 n n 
C2N C3N NDP doub 377 n n 
C2N H2N NDP sing 378 n n 
C3N C7N NDP sing 379 n n 
C3N C4N NDP sing 380 n n 
C7N O7N NDP doub 381 n n 
C7N N7N NDP sing 382 n n 
N7N H71N NDP sing 383 n n 
N7N H72N NDP sing 384 n n 
C4N C5N NDP sing 385 n n 
C4N H41N NDP sing 386 n n 
C4N H42N NDP sing 387 n n 
C5N C6N NDP doub 388 n n 
C5N H5N NDP sing 389 n n 
C6N H6N NDP sing 390 n n 
P2B O1X NDP doub 391 n n 
P2B O2X NDP sing 392 n n 
P2B O3X NDP sing 393 n n 
O2X HOP2 NDP sing 394 n n 
O3X HOP3 NDP sing 395 n n 
#
_atom_sites.entry_id                     5L57 
_atom_sites.fract_transf_matrix[1][1]    0.013724 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005475 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 501 501 NDP NDP . 
C 3 6N3 A 1 502 1 6N3 029 . 
D 4 HOH A 1 601 7 HOH HOH . 
D 4 HOH A 2 602 20 HOH HOH . 
D 4 HOH A 3 603 8 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 17 HOH HOH . 
D 4 HOH A 6 606 1 HOH HOH . 
D 4 HOH A 7 607 13 HOH HOH . 
D 4 HOH A 8 608 2 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 19 HOH HOH . 
D 4 HOH A 11 611 15 HOH HOH . 
D 4 HOH A 12 612 14 HOH HOH . 
D 4 HOH A 13 613 12 HOH HOH . 
D 4 HOH A 14 614 18 HOH HOH . 
D 4 HOH A 15 615 5 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 10 HOH HOH . 
D 4 HOH A 18 618 21 HOH HOH . 
D 4 HOH A 19 619 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 3.235 34.539 178.345 1 61.12 ? PA NDP 501 A 1 
HETATM 2 O O1A NDP . . . B 2 3.66 33.72 179.514 1 60.66 ? O1A NDP 501 A 1 
HETATM 3 O O2A NDP . . . B 2 2.702 35.931 178.518 1 63.97 ? O2A NDP 501 A 1 
HETATM 4 O O5B NDP . . . B 2 2.172 33.654 177.444 1 61.77 ? O5B NDP 501 A 1 
HETATM 5 C C5B NDP . . . B 2 2.975 32.712 176.81 1 56.36 ? C5B NDP 501 A 1 
HETATM 6 C C4B NDP . . . B 2 2.149 31.505 176.413 1 53.43 ? C4B NDP 501 A 1 
HETATM 7 O O4B NDP . . . B 2 2.167 30.551 177.47 1 52.08 ? O4B NDP 501 A 1 
HETATM 8 C C3B NDP . . . B 2 0.686 31.907 176.143 1 54.46 ? C3B NDP 501 A 1 
HETATM 9 O O3B NDP . . . B 2 0.512 32.299 174.813 1 55.33 ? O3B NDP 501 A 1 
HETATM 10 C C2B NDP . . . B 2 -0.002 30.545 176.388 1 55.32 ? C2B NDP 501 A 1 
HETATM 11 O O2B NDP . . . B 2 0.185 29.65 175.413 1 54.7 ? O2B NDP 501 A 1 
HETATM 12 C C1B NDP . . . B 2 0.818 30.077 177.647 1 54.92 ? C1B NDP 501 A 1 
HETATM 13 N N9A NDP . . . B 2 0.302 30.652 178.891 1 54.02 ? N9A NDP 501 A 1 
HETATM 14 C C8A NDP . . . B 2 0.971 31.474 179.813 1 53.41 ? C8A NDP 501 A 1 
HETATM 15 N N7A NDP . . . B 2 0.205 31.831 180.858 1 53.88 ? N7A NDP 501 A 1 
HETATM 16 C C5A NDP . . . B 2 -1.024 31.202 180.598 1 53.05 ? C5A NDP 501 A 1 
HETATM 17 C C6A NDP . . . B 2 -2.231 31.181 181.306 1 51.16 ? C6A NDP 501 A 1 
HETATM 18 N N6A NDP . . . B 2 -2.344 31.875 182.495 1 50.1 ? N6A NDP 501 A 1 
HETATM 19 N N1A NDP . . . B 2 -3.315 30.483 180.844 1 52.06 ? N1A NDP 501 A 1 
HETATM 20 C C2A NDP . . . B 2 -3.119 29.823 179.653 1 54.33 ? C2A NDP 501 A 1 
HETATM 21 N N3A NDP . . . B 2 -2.037 29.747 178.862 1 55.14 ? N3A NDP 501 A 1 
HETATM 22 C C4A NDP . . . B 2 -0.977 30.463 179.373 1 54.06 ? C4A NDP 501 A 1 
HETATM 23 O O3 NDP . . . B 2 4.684 34.656 177.542 1 66.55 ? O3 NDP 501 A 1 
HETATM 24 P PN NDP . . . B 2 4.599 35.767 176.395 1 67.07 ? PN NDP 501 A 1 
HETATM 25 O O1N NDP . . . B 2 5.817 35.634 175.572 1 68.36 ? O1N NDP 501 A 1 
HETATM 26 O O2N NDP . . . B 2 3.223 35.993 175.806 1 68.48 ? O2N NDP 501 A 1 
HETATM 27 O O5D NDP . . . B 2 4.929 37.333 177.157 1 63.69 ? O5D NDP 501 A 1 
HETATM 28 C C5D NDP . . . B 2 3.922 38.219 176.845 1 62.06 ? C5D NDP 501 A 1 
HETATM 29 C C4D NDP . . . B 2 4.149 39.467 177.665 1 63 ? C4D NDP 501 A 1 
HETATM 30 O O4D NDP . . . B 2 4.521 39.07 178.993 1 63.64 ? O4D NDP 501 A 1 
HETATM 31 C C3D NDP . . . B 2 5.363 40.249 177.067 1 62.91 ? C3D NDP 501 A 1 
HETATM 32 O O3D NDP . . . B 2 4.973 41.568 176.844 1 62.2 ? O3D NDP 501 A 1 
HETATM 33 C C2D NDP . . . B 2 6.426 40.162 178.171 1 62.19 ? C2D NDP 501 A 1 
HETATM 34 O O2D NDP . . . B 2 7.133 41.35 178.35 1 61 ? O2D NDP 501 A 1 
HETATM 35 C C1D NDP . . . B 2 5.545 39.924 179.433 1 62.86 ? C1D NDP 501 A 1 
HETATM 36 N N1N NDP . . . B 2 6.303 39.236 180.511 1 62.77 ? N1N NDP 501 A 1 
HETATM 37 C C2N NDP . . . B 2 6.252 39.727 181.795 1 63.78 ? C2N NDP 501 A 1 
HETATM 38 C C3N NDP . . . B 2 6.526 38.915 182.852 1 64.38 ? C3N NDP 501 A 1 
HETATM 39 C C7N NDP . . . B 2 6.447 39.498 184.195 1 63.1 ? C7N NDP 501 A 1 
HETATM 40 O O7N NDP . . . B 2 6.405 38.828 185.232 1 64.68 ? O7N NDP 501 A 1 
HETATM 41 N N7N NDP . . . B 2 6.418 40.882 184.32 1 62.71 ? N7N NDP 501 A 1 
HETATM 42 C C4N NDP . . . B 2 6.894 37.488 182.656 1 63.5 ? C4N NDP 501 A 1 
HETATM 43 C C5N NDP . . . B 2 7.341 37.232 181.263 1 65.82 ? C5N NDP 501 A 1 
HETATM 44 C C6N NDP . . . B 2 7.048 38.072 180.265 1 64.93 ? C6N NDP 501 A 1 
HETATM 45 P P2B NDP . . . B 2 -1.225 29.49 174.253 1 57.53 ? P2B NDP 501 A 1 
HETATM 46 O O1X NDP . . . B 2 -0.609 28.413 173.415 1 58.65 ? O1X NDP 501 A 1 
HETATM 47 O O2X NDP . . . B 2 -2.407 29.1 175.145 1 59.06 ? O2X NDP 501 A 1 
HETATM 48 O O3X NDP . . . B 2 -1.206 30.891 173.708 1 55.53 ? O3X NDP 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           48 
#