data_5L57
#
_model_server_result.job_id            4m0VE_VCPkFsb3w0U1hzCQ 
_model_server_result.datetime_utc      '2024-11-30 01:03:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5L57 
#
_exptl.entry_id    5L57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.6 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1~{R},5~{S})-3-[6-(3-methylbutoxy)-5-[[(1~{R},3~{S})-5-oxidanyl-2-adamantyl]carbamoyl]pyridin-2-yl]-3-azabicyclo[3.1.0]hexane-6-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L57 
_cell.length_a            72.866 
_cell.length_b            72.866 
_cell.length_c            182.642 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_557 y,x,-z+2 0 1 0 1 0 0 0 0 -1 0 0 365.284 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H37 N3 O5' 
_chem_comp.formula_weight    483.6 
_chem_comp.id                6N3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1~{R},5~{S})-3-[6-(3-methylbutoxy)-5-[[(1~{R},3~{S})-5-oxidanyl-2-adamantyl]carbamoyl]pyridin-2-yl]-3-azabicyclo[3.1.0]hexane-6-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 C12 6N3 sing 1 n n 
C20 C18 6N3 sing 2 n n 
O2 C18 6N3 sing 3 n n 
C12 C13 6N3 sing 4 n n 
C12 C11 6N3 sing 5 n n 
C18 C19 6N3 sing 6 n n 
C18 C17 6N3 sing 7 n n 
C13 C14 6N3 sing 8 n n 
C11 N1 6N3 sing 9 n n 
C11 C16 6N3 sing 10 n n 
C19 C14 6N3 sing 11 n n 
C17 C16 6N3 sing 12 n n 
O1 C10 6N3 doub 13 n n 
C2 C1 6N3 sing 14 n n 
N1 C10 6N3 sing 15 n n 
C14 C15 6N3 sing 16 n n 
C10 C9 6N3 sing 17 n n 
C16 C15 6N3 sing 18 n n 
O C4 6N3 sing 19 n n 
O C5 6N3 sing 20 n n 
C3 C4 6N3 sing 21 n n 
C3 C1 6N3 sing 22 n n 
C1 C 6N3 sing 23 n n 
C9 C5 6N3 doub 24 n y 
C9 C8 6N3 sing 25 n y 
C5 N 6N3 sing 26 n y 
C8 C7 6N3 doub 27 n y 
N C6 6N3 doub 28 n y 
C7 C6 6N3 sing 29 n y 
C6 N2 6N3 sing 30 n n 
C24 N2 6N3 sing 31 n n 
C24 C23 6N3 sing 32 n n 
N2 C21 6N3 sing 33 n n 
C23 C22 6N3 sing 34 n n 
C23 C25 6N3 sing 35 n n 
O4 C26 6N3 doub 36 n n 
C22 C21 6N3 sing 37 n n 
C22 C25 6N3 sing 38 n n 
C25 C26 6N3 sing 39 n n 
C26 O3 6N3 sing 40 n n 
C1 H1 6N3 sing 41 n n 
C7 H2 6N3 sing 42 n n 
C4 H3 6N3 sing 43 n n 
C4 H4 6N3 sing 44 n n 
C3 H5 6N3 sing 45 n n 
C3 H6 6N3 sing 46 n n 
C12 H7 6N3 sing 47 n n 
C2 H8 6N3 sing 48 n n 
C2 H9 6N3 sing 49 n n 
C2 H10 6N3 sing 50 n n 
O3 H11 6N3 sing 51 n n 
C25 H12 6N3 sing 52 n n 
C22 H13 6N3 sing 53 n n 
C21 H14 6N3 sing 54 n n 
C21 H15 6N3 sing 55 n n 
C23 H16 6N3 sing 56 n n 
C24 H17 6N3 sing 57 n n 
C24 H18 6N3 sing 58 n n 
C8 H19 6N3 sing 59 n n 
C H20 6N3 sing 60 n n 
C H21 6N3 sing 61 n n 
C H22 6N3 sing 62 n n 
N1 H23 6N3 sing 63 n n 
C11 H24 6N3 sing 64 n n 
C16 H25 6N3 sing 65 n n 
C15 H26 6N3 sing 66 n n 
C15 H27 6N3 sing 67 n n 
C17 H28 6N3 sing 68 n n 
C17 H29 6N3 sing 69 n n 
O2 H30 6N3 sing 70 n n 
C20 H31 6N3 sing 71 n n 
C20 H32 6N3 sing 72 n n 
C19 H33 6N3 sing 73 n n 
C19 H34 6N3 sing 74 n n 
C14 H35 6N3 sing 75 n n 
C13 H36 6N3 sing 76 n n 
C13 H37 6N3 sing 77 n n 
#
_atom_sites.entry_id                     5L57 
_atom_sites.fract_transf_matrix[1][1]    0.013724 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005475 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 501 501 NDP NDP . 
C 3 6N3 A 1 502 1 6N3 029 . 
D 4 HOH A 1 601 7 HOH HOH . 
D 4 HOH A 2 602 20 HOH HOH . 
D 4 HOH A 3 603 8 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 17 HOH HOH . 
D 4 HOH A 6 606 1 HOH HOH . 
D 4 HOH A 7 607 13 HOH HOH . 
D 4 HOH A 8 608 2 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 19 HOH HOH . 
D 4 HOH A 11 611 15 HOH HOH . 
D 4 HOH A 12 612 14 HOH HOH . 
D 4 HOH A 13 613 12 HOH HOH . 
D 4 HOH A 14 614 18 HOH HOH . 
D 4 HOH A 15 615 5 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 10 HOH HOH . 
D 4 HOH A 18 618 21 HOH HOH . 
D 4 HOH A 19 619 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 6N3 . . . C 3 15.577 18.11 185.173 1 61.78 ? C1 6N3 502 A 1 
HETATM 2 C C6 6N3 . . . C 3 11.419 22.882 186.366 1 63.41 ? C6 6N3 502 A 1 
HETATM 3 C C7 6N3 . . . C 3 11.504 24.265 186.233 1 63.42 ? C7 6N3 502 A 1 
HETATM 4 C C9 6N3 . . . C 3 13.646 24.034 185.178 1 62.52 ? C9 6N3 502 A 1 
HETATM 5 C C5 6N3 . . . C 3 13.512 22.567 185.345 1 60.84 ? C5 6N3 502 A 1 
HETATM 6 C C4 6N3 . . . C 3 14.351 20.309 185.139 1 60.45 ? C4 6N3 502 A 1 
HETATM 7 C C3 6N3 . . . C 3 15.698 19.615 184.962 1 61.41 ? C3 6N3 502 A 1 
HETATM 8 C C12 6N3 . . . C 3 17.579 23.186 182.773 1 79.26 ? C12 6N3 502 A 1 
HETATM 9 C C2 6N3 . . . C 3 14.612 17.495 184.168 1 62.42 ? C2 6N3 502 A 1 
HETATM 10 O O4 6N3 . . . C 3 6.53 19.482 187.977 1 73.33 ? O4 6N3 502 A 1 
HETATM 11 C C26 6N3 . . . C 3 7.008 20.203 188.88 1 74.35 ? C26 6N3 502 A 1 
HETATM 12 O O3 6N3 . . . C 3 6.7 20.087 190.085 1 76.6 ? O3 6N3 502 A 1 
HETATM 13 C C25 6N3 . . . C 3 8.005 21.254 188.501 1 72.96 ? C25 6N3 502 A 1 
HETATM 14 C C22 6N3 . . . C 3 9.258 20.536 188.026 1 72.13 ? C22 6N3 502 A 1 
HETATM 15 C C21 6N3 . . . C 3 10.482 21.436 188.135 1 69.89 ? C21 6N3 502 A 1 
HETATM 16 C C23 6N3 . . . C 3 8.302 21.156 187.009 1 72.5 ? C23 6N3 502 A 1 
HETATM 17 C C24 6N3 . . . C 3 8.962 22.415 186.447 1 70.15 ? C24 6N3 502 A 1 
HETATM 18 N N2 6N3 . . . C 3 10.312 22.276 186.965 1 68.52 ? N2 6N3 502 A 1 
HETATM 19 N N 6N3 . . . C 3 12.406 22.072 185.929 1 61.34 ? N 6N3 502 A 1 
HETATM 20 C C8 6N3 . . . C 3 12.62 24.849 185.638 1 62.59 ? C8 6N3 502 A 1 
HETATM 21 O O 6N3 . . . C 3 14.493 21.712 184.917 1 60.08 ? O 6N3 502 A 1 
HETATM 22 C C 6N3 . . . C 3 15.147 17.782 186.597 1 62.37 ? C 6N3 502 A 1 
HETATM 23 C C10 6N3 . . . C 3 14.873 24.611 184.533 1 66.83 ? C10 6N3 502 A 1 
HETATM 24 O O1 6N3 . . . C 3 14.842 25.746 184.086 1 66.79 ? O1 6N3 502 A 1 
HETATM 25 N N1 6N3 . . . C 3 15.967 23.852 184.469 1 71.96 ? N1 6N3 502 A 1 
HETATM 26 C C11 6N3 . . . C 3 17.173 24.259 183.772 1 77.04 ? C11 6N3 502 A 1 
HETATM 27 C C16 6N3 . . . C 3 18.308 24.451 184.767 1 79.75 ? C16 6N3 502 A 1 
HETATM 28 C C15 6N3 . . . C 3 18.579 23.146 185.507 1 80.67 ? C15 6N3 502 A 1 
HETATM 29 C C17 6N3 . . . C 3 19.581 24.871 184.042 1 81.22 ? C17 6N3 502 A 1 
HETATM 30 C C18 6N3 . . . C 3 19.981 23.788 183.048 1 81.17 ? C18 6N3 502 A 1 
HETATM 31 O O2 6N3 . . . C 3 21.171 24.186 182.362 1 81.76 ? O2 6N3 502 A 1 
HETATM 32 C C20 6N3 . . . C 3 18.851 23.597 182.042 1 80.84 ? C20 6N3 502 A 1 
HETATM 33 C C19 6N3 . . . C 3 20.234 22.478 183.785 1 82.65 ? C19 6N3 502 A 1 
HETATM 34 C C14 6N3 . . . C 3 18.967 22.052 184.52 1 81.56 ? C14 6N3 502 A 1 
HETATM 35 C C13 6N3 . . . C 3 17.842 21.875 183.503 1 80.72 ? C13 6N3 502 A 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#