data_5L5E # _model_server_result.job_id H3AlKPn3cjwajT0aLkU-sw _model_server_result.datetime_utc '2024-10-10 00:26:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":201}' # _entry.id 5L5E # _exptl.entry_id 5L5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.95 _cell.angle_gamma 90 _cell.entry_id 5L5E _cell.length_a 136.17 _cell.length_b 300.84 _cell.length_c 145.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 CA N N ? 15 GA N N ? 15 HA N N ? 15 IA N N ? 15 KA N N ? 15 MA N N ? 15 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H N THR 1 H THR 1 1_555 EA C51 3BV . H 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale2 H OG1 THR 1 H THR 1 1_555 EA C47 3BV . H 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 K N THR 1 K THR 1 1_555 JA C51 3BV . K 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale4 K OG1 THR 1 K THR 1 1_555 JA C47 3BV . K 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale5 N N THR 1 N THR 1 1_555 LA C51 3BV . N 3BV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.529 ? covale ? covale6 N OG1 THR 1 N THR 1 1_555 LA C47 3BV . N 3BV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale7 V N THR 1 V THR 1 1_555 PA C51 3BV . V 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale8 V OG1 THR 1 V THR 1 1_555 PA C47 3BV . V 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale9 Y N THR 1 Y THR 1 1_555 RA C51 3BV . Y 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale10 Y OG1 THR 1 Y THR 1 1_555 RA C47 3BV . Y 3BV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale11 BA N THR 1 b THR 1 1_555 TA C51 3BV . b 3BV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.529 ? covale ? covale12 BA OG1 THR 1 b THR 1 1_555 TA C47 3BV . b 3BV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 G O ARG 131 G ARG 122 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 G O MET 134 G MET 125 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc4 I O ALA 175 I ALA 174 1_555 GA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc5 I O ASP 178 I ASP 177 1_555 GA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc6 I O SER 181 I SER 180 1_555 GA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 I O ASP 205 I ASP 204 1_555 HA MG MG . I MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc8 HA MG MG . I MG 302 1_555 Y O ALA 164 Y ALA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc9 HA MG MG . I MG 302 1_555 Y O ASP 167 Y ASP 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc10 HA MG MG . I MG 302 1_555 Y O SER 170 Y SER 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc11 K O ALA 164 K ALA 164 1_555 KA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc12 K O ASP 167 K ASP 167 1_555 KA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc13 K O SER 170 K SER 170 1_555 KA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc14 KA MG MG . K MG 302 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc15 N O ILE 163 N ILE 163 1_555 MA MG MG . N MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc16 N O SER 169 N SER 169 1_555 MA MG MG . N MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc17 Z O THR 192 Z THR 192 1_555 SA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc18 Z O HIS 195 Z HIS 195 1_555 SA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc19 Z O VAL 198 Z VAL 198 1_555 SA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L5E _atom_sites.fract_transf_matrix[1][1] 0.007344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00311 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG G 1 301 5 MG MG . DA 16 CL G 1 302 10 CL CL . EA 17 3BV H 1 301 1 3BV LIG . FA 18 MES H 1 302 12 MES MES . GA 15 MG I 1 301 6 MG MG . HA 15 MG I 1 302 3 MG MG . IA 15 MG J 1 201 7 MG MG . JA 17 3BV K 1 301 1 3BV LIG . KA 15 MG K 1 302 1 MG MG . LA 17 3BV N 1 201 1 3BV LIG . MA 15 MG N 1 202 4 MG MG . NA 16 CL N 1 203 8 CL CL . OA 16 CL U 1 301 11 CL CL . PA 17 3BV V 1 301 1 3BV LIG . QA 18 MES V 1 302 13 MES MES . RA 17 3BV Y 1 301 1 3BV LIG . SA 15 MG Z 1 301 2 MG MG . TA 17 3BV b 1 201 1 3BV LIG . UA 16 CL b 1 202 9 CL CL . VA 19 HOH A 1 301 137 HOH HOH . VA 19 HOH A 2 302 102 HOH HOH . VA 19 HOH A 3 303 65 HOH HOH . VA 19 HOH A 4 304 18 HOH HOH . WA 19 HOH B 1 301 36 HOH HOH . WA 19 HOH B 2 302 131 HOH HOH . WA 19 HOH B 3 303 95 HOH HOH . WA 19 HOH B 4 304 99 HOH HOH . WA 19 HOH B 5 305 115 HOH HOH . WA 19 HOH B 6 306 147 HOH HOH . XA 19 HOH C 1 301 106 HOH HOH . XA 19 HOH C 2 302 17 HOH HOH . XA 19 HOH C 3 303 51 HOH HOH . YA 19 HOH D 1 301 32 HOH HOH . YA 19 HOH D 2 302 57 HOH HOH . YA 19 HOH D 3 303 103 HOH HOH . YA 19 HOH D 4 304 73 HOH HOH . ZA 19 HOH E 1 301 10 HOH HOH . ZA 19 HOH E 2 302 33 HOH HOH . ZA 19 HOH E 3 303 81 HOH HOH . AB 19 HOH F 1 301 67 HOH HOH . AB 19 HOH F 2 302 123 HOH HOH . AB 19 HOH F 3 303 68 HOH HOH . AB 19 HOH F 4 304 150 HOH HOH . AB 19 HOH F 5 305 7 HOH HOH . AB 19 HOH F 6 306 60 HOH HOH . BB 19 HOH G 1 401 34 HOH HOH . BB 19 HOH G 2 402 119 HOH HOH . BB 19 HOH G 3 403 140 HOH HOH . BB 19 HOH G 4 404 52 HOH HOH . BB 19 HOH G 5 405 90 HOH HOH . BB 19 HOH G 6 406 76 HOH HOH . BB 19 HOH G 7 407 143 HOH HOH . CB 19 HOH H 1 401 79 HOH HOH . CB 19 HOH H 2 402 70 HOH HOH . CB 19 HOH H 3 403 31 HOH HOH . CB 19 HOH H 4 404 82 HOH HOH . CB 19 HOH H 5 405 124 HOH HOH . DB 19 HOH I 1 401 39 HOH HOH . DB 19 HOH I 2 402 113 HOH HOH . DB 19 HOH I 3 403 13 HOH HOH . DB 19 HOH I 4 404 105 HOH HOH . DB 19 HOH I 5 405 112 HOH HOH . EB 19 HOH J 1 301 4 HOH HOH . EB 19 HOH J 2 302 53 HOH HOH . EB 19 HOH J 3 303 88 HOH HOH . EB 19 HOH J 4 304 129 HOH HOH . EB 19 HOH J 5 305 100 HOH HOH . EB 19 HOH J 6 306 101 HOH HOH . EB 19 HOH J 7 307 83 HOH HOH . EB 19 HOH J 8 308 142 HOH HOH . FB 19 HOH K 1 401 86 HOH HOH . FB 19 HOH K 2 402 20 HOH HOH . FB 19 HOH K 3 403 135 HOH HOH . FB 19 HOH K 4 404 15 HOH HOH . GB 19 HOH L 1 301 153 HOH HOH . GB 19 HOH L 2 302 108 HOH HOH . GB 19 HOH L 3 303 11 HOH HOH . GB 19 HOH L 4 304 126 HOH HOH . GB 19 HOH L 5 305 24 HOH HOH . GB 19 HOH L 6 306 134 HOH HOH . GB 19 HOH L 7 307 77 HOH HOH . GB 19 HOH L 8 308 72 HOH HOH . HB 19 HOH M 1 301 69 HOH HOH . HB 19 HOH M 2 302 2 HOH HOH . HB 19 HOH M 3 303 12 HOH HOH . HB 19 HOH M 4 304 44 HOH HOH . HB 19 HOH M 5 305 38 HOH HOH . HB 19 HOH M 6 306 3 HOH HOH . HB 19 HOH M 7 307 93 HOH HOH . IB 19 HOH N 1 301 152 HOH HOH . IB 19 HOH N 2 302 130 HOH HOH . IB 19 HOH N 3 303 59 HOH HOH . IB 19 HOH N 4 304 121 HOH HOH . IB 19 HOH N 5 305 47 HOH HOH . JB 19 HOH O 1 301 136 HOH HOH . JB 19 HOH O 2 302 85 HOH HOH . JB 19 HOH O 3 303 107 HOH HOH . KB 19 HOH P 1 301 41 HOH HOH . KB 19 HOH P 2 302 26 HOH HOH . KB 19 HOH P 3 303 22 HOH HOH . KB 19 HOH P 4 304 54 HOH HOH . LB 19 HOH Q 1 301 8 HOH HOH . LB 19 HOH Q 2 302 94 HOH HOH . LB 19 HOH Q 3 303 55 HOH HOH . MB 19 HOH R 1 301 28 HOH HOH . MB 19 HOH R 2 302 144 HOH HOH . MB 19 HOH R 3 303 80 HOH HOH . MB 19 HOH R 4 304 49 HOH HOH . MB 19 HOH R 5 305 75 HOH HOH . MB 19 HOH R 6 306 139 HOH HOH . NB 19 HOH S 1 301 21 HOH HOH . NB 19 HOH S 2 302 122 HOH HOH . OB 19 HOH T 1 301 16 HOH HOH . OB 19 HOH T 2 302 30 HOH HOH . OB 19 HOH T 3 303 35 HOH HOH . OB 19 HOH T 4 304 149 HOH HOH . OB 19 HOH T 5 305 89 HOH HOH . PB 19 HOH U 1 401 116 HOH HOH . PB 19 HOH U 2 402 66 HOH HOH . PB 19 HOH U 3 403 42 HOH HOH . PB 19 HOH U 4 404 14 HOH HOH . PB 19 HOH U 5 405 97 HOH HOH . PB 19 HOH U 6 406 117 HOH HOH . PB 19 HOH U 7 407 145 HOH HOH . PB 19 HOH U 8 408 104 HOH HOH . PB 19 HOH U 9 409 84 HOH HOH . QB 19 HOH V 1 401 9 HOH HOH . QB 19 HOH V 2 402 78 HOH HOH . RB 19 HOH W 1 301 25 HOH HOH . RB 19 HOH W 2 302 118 HOH HOH . RB 19 HOH W 3 303 128 HOH HOH . RB 19 HOH W 4 304 92 HOH HOH . RB 19 HOH W 5 305 46 HOH HOH . RB 19 HOH W 6 306 110 HOH HOH . SB 19 HOH X 1 201 56 HOH HOH . SB 19 HOH X 2 202 133 HOH HOH . SB 19 HOH X 3 203 74 HOH HOH . SB 19 HOH X 4 204 27 HOH HOH . SB 19 HOH X 5 205 50 HOH HOH . SB 19 HOH X 6 206 125 HOH HOH . SB 19 HOH X 7 207 132 HOH HOH . SB 19 HOH X 8 208 45 HOH HOH . TB 19 HOH Y 1 401 111 HOH HOH . TB 19 HOH Y 2 402 5 HOH HOH . TB 19 HOH Y 3 403 64 HOH HOH . TB 19 HOH Y 4 404 61 HOH HOH . TB 19 HOH Y 5 405 48 HOH HOH . TB 19 HOH Y 6 406 114 HOH HOH . UB 19 HOH Z 1 401 62 HOH HOH . UB 19 HOH Z 2 402 37 HOH HOH . UB 19 HOH Z 3 403 146 HOH HOH . UB 19 HOH Z 4 404 87 HOH HOH . UB 19 HOH Z 5 405 58 HOH HOH . UB 19 HOH Z 6 406 141 HOH HOH . UB 19 HOH Z 7 407 40 HOH HOH . VB 19 HOH a 1 301 98 HOH HOH . VB 19 HOH a 2 302 148 HOH HOH . VB 19 HOH a 3 303 1 HOH HOH . VB 19 HOH a 4 304 151 HOH HOH . VB 19 HOH a 5 305 138 HOH HOH . VB 19 HOH a 6 306 19 HOH HOH . VB 19 HOH a 7 307 43 HOH HOH . WB 19 HOH b 1 301 120 HOH HOH . WB 19 HOH b 2 302 6 HOH HOH . WB 19 HOH b 3 303 23 HOH HOH . WB 19 HOH b 4 304 109 HOH HOH . WB 19 HOH b 5 305 63 HOH HOH . WB 19 HOH b 6 306 96 HOH HOH . WB 19 HOH b 7 307 71 HOH HOH . WB 19 HOH b 8 308 29 HOH HOH . WB 19 HOH b 9 309 127 HOH HOH . WB 19 HOH b 10 310 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id IA _atom_site.label_entity_id 15 _atom_site.Cartn_x 51.06 _atom_site.Cartn_y -130.833 _atom_site.Cartn_z 8.607 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id J _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 145 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #