data_5L5I # _model_server_result.job_id mxDpN-gM0mi6vN-wnCqh3w _model_server_result.datetime_utc '2024-11-26 17:48:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":302}' # _entry.id 5L5I # _exptl.entry_id 5L5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.82 _cell.angle_gamma 90 _cell.entry_id 5L5I _cell.length_a 135.71 _cell.length_b 299.42 _cell.length_c 145.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 CA N N ? 15 EA N N ? 15 FA N N ? 15 GA N N ? 15 IA N N ? 15 JA N N ? 15 KA N N ? 15 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 K N THR 1 K THR 1 1_555 HA C37 38X . K 38X 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale2 K OG1 THR 1 K THR 1 1_555 HA C31 38X . K 38X 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale3 Y N THR 1 Y THR 1 1_555 NA C37 38X . Y 38X 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale4 Y OG1 THR 1 Y THR 1 1_555 NA C31 38X . Y 38X 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc2 G O ARG 131 G ARG 122 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc3 G O MET 134 G MET 125 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 I O ALA 175 I ALA 174 1_555 EA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 I O ASP 178 I ASP 177 1_555 EA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc6 I O SER 181 I SER 180 1_555 EA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 I O ASP 205 I ASP 204 1_555 FA MG MG . I MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 FA MG MG . I MG 302 1_555 Y O ALA 164 Y ALA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 FA MG MG . I MG 302 1_555 Y O ASP 167 Y ASP 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc10 FA MG MG . I MG 302 1_555 Y O SER 170 Y SER 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc11 K O ALA 164 K ALA 164 1_555 IA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 K O ASP 167 K ASP 167 1_555 IA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc13 K O SER 170 K SER 170 1_555 IA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc14 IA MG MG . K MG 302 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc15 L OXT ASP 222 L ASP 222 1_555 JA MG MG . L MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc16 JA MG MG . L MG 301 1_555 V O ILE 163 V ILE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc17 JA MG MG . L MG 301 1_555 V O ASP 166 V ASP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc18 N O ILE 163 N ILE 163 1_555 KA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc19 N O ASP 166 N ASP 166 1_555 KA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc20 N O SER 169 N SER 169 1_555 KA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc21 Z O THR 192 Z THR 192 1_555 PA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc22 Z O VAL 198 Z VAL 198 1_555 PA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L5I _atom_sites.fract_transf_matrix[1][1] 0.007369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG G 1 301 6 MG MG . DA 16 CL G 1 302 9 CL CL . EA 15 MG I 1 301 7 MG MG . FA 15 MG I 1 302 4 MG MG . GA 15 MG J 1 201 8 MG MG . HA 17 38X K 1 301 1 38X LIG . IA 15 MG K 1 302 1 MG MG . JA 15 MG L 1 301 2 MG MG . KA 15 MG N 1 201 5 MG MG . LA 16 CL U 1 301 10 CL CL . MA 18 MES V 1 301 11 MES MES . NA 17 38X Y 1 301 1 38X LIG . OA 18 MES Y 1 302 12 MES MES . PA 15 MG Z 1 301 3 MG MG . QA 19 HOH A 1 301 67 HOH HOH . QA 19 HOH A 2 302 41 HOH HOH . QA 19 HOH A 3 303 133 HOH HOH . QA 19 HOH A 4 304 191 HOH HOH . QA 19 HOH A 5 305 147 HOH HOH . QA 19 HOH A 6 306 80 HOH HOH . QA 19 HOH A 7 307 56 HOH HOH . QA 19 HOH A 8 308 141 HOH HOH . QA 19 HOH A 9 309 165 HOH HOH . QA 19 HOH A 10 310 113 HOH HOH . RA 19 HOH B 1 301 184 HOH HOH . RA 19 HOH B 2 302 101 HOH HOH . RA 19 HOH B 3 303 119 HOH HOH . RA 19 HOH B 4 304 160 HOH HOH . RA 19 HOH B 5 305 157 HOH HOH . RA 19 HOH B 6 306 179 HOH HOH . SA 19 HOH C 1 301 129 HOH HOH . SA 19 HOH C 2 302 13 HOH HOH . SA 19 HOH C 3 303 125 HOH HOH . SA 19 HOH C 4 304 164 HOH HOH . TA 19 HOH D 1 301 151 HOH HOH . TA 19 HOH D 2 302 169 HOH HOH . TA 19 HOH D 3 303 182 HOH HOH . TA 19 HOH D 4 304 174 HOH HOH . UA 19 HOH E 1 301 148 HOH HOH . UA 19 HOH E 2 302 17 HOH HOH . UA 19 HOH E 3 303 102 HOH HOH . UA 19 HOH E 4 304 180 HOH HOH . UA 19 HOH E 5 305 185 HOH HOH . UA 19 HOH E 6 306 163 HOH HOH . VA 19 HOH F 1 301 36 HOH HOH . VA 19 HOH F 2 302 55 HOH HOH . VA 19 HOH F 3 303 53 HOH HOH . VA 19 HOH F 4 304 126 HOH HOH . VA 19 HOH F 5 305 64 HOH HOH . VA 19 HOH F 6 306 34 HOH HOH . VA 19 HOH F 7 307 145 HOH HOH . WA 19 HOH G 1 401 46 HOH HOH . WA 19 HOH G 2 402 61 HOH HOH . WA 19 HOH G 3 403 5 HOH HOH . WA 19 HOH G 4 404 154 HOH HOH . WA 19 HOH G 5 405 155 HOH HOH . WA 19 HOH G 6 406 89 HOH HOH . XA 19 HOH H 1 301 131 HOH HOH . XA 19 HOH H 2 302 22 HOH HOH . XA 19 HOH H 3 303 109 HOH HOH . XA 19 HOH H 4 304 47 HOH HOH . XA 19 HOH H 5 305 30 HOH HOH . XA 19 HOH H 6 306 100 HOH HOH . XA 19 HOH H 7 307 104 HOH HOH . XA 19 HOH H 8 308 111 HOH HOH . XA 19 HOH H 9 309 84 HOH HOH . XA 19 HOH H 10 310 49 HOH HOH . XA 19 HOH H 11 311 171 HOH HOH . XA 19 HOH H 12 312 117 HOH HOH . XA 19 HOH H 13 313 158 HOH HOH . YA 19 HOH I 1 401 153 HOH HOH . YA 19 HOH I 2 402 135 HOH HOH . YA 19 HOH I 3 403 137 HOH HOH . YA 19 HOH I 4 404 26 HOH HOH . ZA 19 HOH J 1 301 70 HOH HOH . ZA 19 HOH J 2 302 127 HOH HOH . ZA 19 HOH J 3 303 81 HOH HOH . ZA 19 HOH J 4 304 116 HOH HOH . ZA 19 HOH J 5 305 58 HOH HOH . ZA 19 HOH J 6 306 114 HOH HOH . ZA 19 HOH J 7 307 134 HOH HOH . ZA 19 HOH J 8 308 91 HOH HOH . ZA 19 HOH J 9 309 168 HOH HOH . AB 19 HOH K 1 401 82 HOH HOH . AB 19 HOH K 2 402 195 HOH HOH . AB 19 HOH K 3 403 65 HOH HOH . AB 19 HOH K 4 404 4 HOH HOH . AB 19 HOH K 5 405 142 HOH HOH . BB 19 HOH L 1 401 139 HOH HOH . BB 19 HOH L 2 402 28 HOH HOH . BB 19 HOH L 3 403 54 HOH HOH . BB 19 HOH L 4 404 59 HOH HOH . BB 19 HOH L 5 405 45 HOH HOH . BB 19 HOH L 6 406 132 HOH HOH . BB 19 HOH L 7 407 189 HOH HOH . CB 19 HOH M 1 301 94 HOH HOH . CB 19 HOH M 2 302 21 HOH HOH . CB 19 HOH M 3 303 14 HOH HOH . CB 19 HOH M 4 304 40 HOH HOH . CB 19 HOH M 5 305 76 HOH HOH . CB 19 HOH M 6 306 27 HOH HOH . CB 19 HOH M 7 307 74 HOH HOH . CB 19 HOH M 8 308 176 HOH HOH . CB 19 HOH M 9 309 66 HOH HOH . CB 19 HOH M 10 310 170 HOH HOH . DB 19 HOH N 1 301 75 HOH HOH . DB 19 HOH N 2 302 23 HOH HOH . DB 19 HOH N 3 303 35 HOH HOH . DB 19 HOH N 4 304 25 HOH HOH . DB 19 HOH N 5 305 162 HOH HOH . DB 19 HOH N 6 306 107 HOH HOH . DB 19 HOH N 7 307 188 HOH HOH . DB 19 HOH N 8 308 73 HOH HOH . DB 19 HOH N 9 309 11 HOH HOH . DB 19 HOH N 10 310 187 HOH HOH . EB 19 HOH O 1 301 105 HOH HOH . EB 19 HOH O 2 302 123 HOH HOH . EB 19 HOH O 3 303 87 HOH HOH . EB 19 HOH O 4 304 93 HOH HOH . EB 19 HOH O 5 305 68 HOH HOH . EB 19 HOH O 6 306 161 HOH HOH . FB 19 HOH P 1 301 71 HOH HOH . FB 19 HOH P 2 302 72 HOH HOH . FB 19 HOH P 3 303 108 HOH HOH . FB 19 HOH P 4 304 96 HOH HOH . FB 19 HOH P 5 305 159 HOH HOH . FB 19 HOH P 6 306 192 HOH HOH . FB 19 HOH P 7 307 173 HOH HOH . GB 19 HOH Q 1 301 144 HOH HOH . GB 19 HOH Q 2 302 16 HOH HOH . GB 19 HOH Q 3 303 121 HOH HOH . GB 19 HOH Q 4 304 156 HOH HOH . HB 19 HOH R 1 301 194 HOH HOH . HB 19 HOH R 2 302 150 HOH HOH . HB 19 HOH R 3 303 178 HOH HOH . HB 19 HOH R 4 304 79 HOH HOH . IB 19 HOH S 1 301 90 HOH HOH . IB 19 HOH S 2 302 97 HOH HOH . IB 19 HOH S 3 303 172 HOH HOH . IB 19 HOH S 4 304 31 HOH HOH . IB 19 HOH S 5 305 112 HOH HOH . IB 19 HOH S 6 306 175 HOH HOH . IB 19 HOH S 7 307 186 HOH HOH . JB 19 HOH T 1 301 167 HOH HOH . JB 19 HOH T 2 302 77 HOH HOH . JB 19 HOH T 3 303 115 HOH HOH . JB 19 HOH T 4 304 44 HOH HOH . JB 19 HOH T 5 305 138 HOH HOH . KB 19 HOH U 1 401 9 HOH HOH . KB 19 HOH U 2 402 63 HOH HOH . KB 19 HOH U 3 403 62 HOH HOH . KB 19 HOH U 4 404 57 HOH HOH . KB 19 HOH U 5 405 83 HOH HOH . KB 19 HOH U 6 406 85 HOH HOH . KB 19 HOH U 7 407 120 HOH HOH . KB 19 HOH U 8 408 2 HOH HOH . KB 19 HOH U 9 409 177 HOH HOH . KB 19 HOH U 10 410 88 HOH HOH . LB 19 HOH V 1 401 110 HOH HOH . LB 19 HOH V 2 402 193 HOH HOH . MB 19 HOH W 1 301 52 HOH HOH . MB 19 HOH W 2 302 99 HOH HOH . MB 19 HOH W 3 303 190 HOH HOH . MB 19 HOH W 4 304 149 HOH HOH . NB 19 HOH X 1 201 50 HOH HOH . NB 19 HOH X 2 202 38 HOH HOH . NB 19 HOH X 3 203 136 HOH HOH . NB 19 HOH X 4 204 20 HOH HOH . NB 19 HOH X 5 205 42 HOH HOH . NB 19 HOH X 6 206 69 HOH HOH . OB 19 HOH Y 1 401 60 HOH HOH . OB 19 HOH Y 2 402 95 HOH HOH . OB 19 HOH Y 3 403 103 HOH HOH . OB 19 HOH Y 4 404 124 HOH HOH . OB 19 HOH Y 5 405 140 HOH HOH . OB 19 HOH Y 6 406 130 HOH HOH . OB 19 HOH Y 7 407 33 HOH HOH . OB 19 HOH Y 8 408 183 HOH HOH . PB 19 HOH Z 1 401 166 HOH HOH . PB 19 HOH Z 2 402 24 HOH HOH . PB 19 HOH Z 3 403 98 HOH HOH . PB 19 HOH Z 4 404 143 HOH HOH . PB 19 HOH Z 5 405 146 HOH HOH . PB 19 HOH Z 6 406 39 HOH HOH . QB 19 HOH a 1 301 152 HOH HOH . QB 19 HOH a 2 302 32 HOH HOH . QB 19 HOH a 3 303 128 HOH HOH . QB 19 HOH a 4 304 78 HOH HOH . QB 19 HOH a 5 305 15 HOH HOH . QB 19 HOH a 6 306 8 HOH HOH . QB 19 HOH a 7 307 3 HOH HOH . QB 19 HOH a 8 308 86 HOH HOH . QB 19 HOH a 9 309 37 HOH HOH . QB 19 HOH a 10 310 118 HOH HOH . QB 19 HOH a 11 311 51 HOH HOH . QB 19 HOH a 12 312 29 HOH HOH . QB 19 HOH a 13 313 181 HOH HOH . RB 19 HOH b 1 201 19 HOH HOH . RB 19 HOH b 2 202 92 HOH HOH . RB 19 HOH b 3 203 43 HOH HOH . RB 19 HOH b 4 204 106 HOH HOH . RB 19 HOH b 5 205 122 HOH HOH . RB 19 HOH b 6 206 12 HOH HOH . RB 19 HOH b 7 207 10 HOH HOH . RB 19 HOH b 8 208 7 HOH HOH . RB 19 HOH b 9 209 18 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id IA _atom_site.label_entity_id 15 _atom_site.Cartn_x 6.682 _atom_site.Cartn_y -146.69 _atom_site.Cartn_z 7.635 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 68.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id K _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #