data_5L5J # _model_server_result.job_id XdN4SxKWCtxLZjS4edMleQ _model_server_result.datetime_utc '2024-11-15 08:45:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":302}' # _entry.id 5L5J # _exptl.entry_id 5L5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.76 _cell.angle_gamma 90 _cell.entry_id 5L5J _cell.length_a 135.69 _cell.length_b 299.81 _cell.length_c 145.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 CA N N ? 15 GA N N ? 15 HA N N ? 15 IA N N ? 15 KA N N ? 15 LA N N ? 15 MA N N ? 15 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H N THR 1 H THR 1 1_555 EA C10 6N5 . H 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale2 H OG1 THR 1 H THR 1 1_555 EA C9 6N5 . H 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 K N THR 1 K THR 1 1_555 JA C10 6N5 . K 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale4 K OG1 THR 1 K THR 1 1_555 JA C9 6N5 . K 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale5 V N THR 1 V THR 1 1_555 OA C10 6N5 . V 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale6 V OG1 THR 1 V THR 1 1_555 OA C9 6N5 . V 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 Y N THR 1 Y THR 1 1_555 PA C10 6N5 . Y 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale8 Y OG1 THR 1 Y THR 1 1_555 PA C9 6N5 . Y 6N5 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 G O TYR 128 G TYR 119 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc3 G O ARG 131 G ARG 122 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc4 G O MET 134 G MET 125 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 I O ALA 175 I ALA 174 1_555 GA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc6 I O ASP 178 I ASP 177 1_555 GA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc7 I O SER 181 I SER 180 1_555 GA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 I O ASP 205 I ASP 204 1_555 HA MG MG . I MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc9 HA MG MG . I MG 302 1_555 Y O ALA 164 Y ALA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc10 HA MG MG . I MG 302 1_555 Y O ASP 167 Y ASP 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc11 HA MG MG . I MG 302 1_555 Y O SER 170 Y SER 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc12 K O ALA 164 K ALA 164 1_555 KA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 K O ASP 167 K ASP 167 1_555 KA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc14 K O SER 170 K SER 170 1_555 KA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc15 KA MG MG . K MG 302 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc16 L OXT ASP 222 L ASP 222 1_555 LA MG MG . L MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc17 LA MG MG . L MG 301 1_555 V O ILE 163 V ILE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc18 LA MG MG . L MG 301 1_555 V O ASP 166 V ASP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc19 N O ILE 163 N ILE 163 1_555 MA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc20 N O ASP 166 N ASP 166 1_555 MA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc21 N O SER 169 N SER 169 1_555 MA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc22 Z O THR 192 Z THR 192 1_555 RA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc23 Z O HIS 195 Z HIS 195 1_555 RA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc24 Z O VAL 198 Z VAL 198 1_555 RA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L5J _atom_sites.fract_transf_matrix[1][1] 0.00737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003092 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG G 1 301 6 MG MG . DA 16 CL G 1 302 9 CL CL . EA 17 6N5 H 1 301 1 6N5 LIG . FA 18 MES H 1 302 11 MES MES . GA 15 MG I 1 301 7 MG MG . HA 15 MG I 1 302 4 MG MG . IA 15 MG J 1 201 8 MG MG . JA 17 6N5 K 1 301 1 6N5 LIG . KA 15 MG K 1 302 1 MG MG . LA 15 MG L 1 301 2 MG MG . MA 15 MG N 1 201 5 MG MG . NA 16 CL U 1 301 10 CL CL . OA 17 6N5 V 1 301 1 6N5 LIG . PA 17 6N5 Y 1 301 1 6N5 LIG . QA 18 MES Y 1 302 12 MES MES . RA 15 MG Z 1 301 3 MG MG . SA 19 HOH A 1 301 50 HOH HOH . SA 19 HOH A 2 302 46 HOH HOH . SA 19 HOH A 3 303 90 HOH HOH . TA 19 HOH B 1 301 52 HOH HOH . TA 19 HOH B 2 302 67 HOH HOH . TA 19 HOH B 3 303 169 HOH HOH . TA 19 HOH B 4 304 107 HOH HOH . TA 19 HOH B 5 305 75 HOH HOH . TA 19 HOH B 6 306 76 HOH HOH . TA 19 HOH B 7 307 108 HOH HOH . TA 19 HOH B 8 308 135 HOH HOH . TA 19 HOH B 9 309 151 HOH HOH . TA 19 HOH B 10 310 164 HOH HOH . TA 19 HOH B 11 311 167 HOH HOH . TA 19 HOH B 12 312 102 HOH HOH . UA 19 HOH C 1 301 40 HOH HOH . UA 19 HOH C 2 302 12 HOH HOH . UA 19 HOH C 3 303 79 HOH HOH . UA 19 HOH C 4 304 125 HOH HOH . UA 19 HOH C 5 305 161 HOH HOH . UA 19 HOH C 6 306 113 HOH HOH . UA 19 HOH C 7 307 111 HOH HOH . VA 19 HOH D 1 301 100 HOH HOH . VA 19 HOH D 2 302 162 HOH HOH . WA 19 HOH E 1 301 159 HOH HOH . WA 19 HOH E 2 302 148 HOH HOH . XA 19 HOH F 1 301 38 HOH HOH . XA 19 HOH F 2 302 19 HOH HOH . XA 19 HOH F 3 303 91 HOH HOH . XA 19 HOH F 4 304 88 HOH HOH . XA 19 HOH F 5 305 68 HOH HOH . XA 19 HOH F 6 306 145 HOH HOH . XA 19 HOH F 7 307 53 HOH HOH . YA 19 HOH G 1 401 110 HOH HOH . YA 19 HOH G 2 402 158 HOH HOH . YA 19 HOH G 3 403 85 HOH HOH . YA 19 HOH G 4 404 8 HOH HOH . YA 19 HOH G 5 405 143 HOH HOH . YA 19 HOH G 6 406 150 HOH HOH . YA 19 HOH G 7 407 163 HOH HOH . ZA 19 HOH H 1 401 87 HOH HOH . ZA 19 HOH H 2 402 55 HOH HOH . ZA 19 HOH H 3 403 129 HOH HOH . ZA 19 HOH H 4 404 60 HOH HOH . ZA 19 HOH H 5 405 144 HOH HOH . ZA 19 HOH H 6 406 123 HOH HOH . AB 19 HOH I 1 401 116 HOH HOH . AB 19 HOH I 2 402 32 HOH HOH . AB 19 HOH I 3 403 112 HOH HOH . AB 19 HOH I 4 404 63 HOH HOH . AB 19 HOH I 5 405 21 HOH HOH . BB 19 HOH J 1 301 16 HOH HOH . BB 19 HOH J 2 302 94 HOH HOH . BB 19 HOH J 3 303 62 HOH HOH . BB 19 HOH J 4 304 65 HOH HOH . BB 19 HOH J 5 305 134 HOH HOH . BB 19 HOH J 6 306 109 HOH HOH . CB 19 HOH K 1 401 1 HOH HOH . CB 19 HOH K 2 402 83 HOH HOH . CB 19 HOH K 3 403 124 HOH HOH . CB 19 HOH K 4 404 30 HOH HOH . DB 19 HOH L 1 401 57 HOH HOH . DB 19 HOH L 2 402 29 HOH HOH . DB 19 HOH L 3 403 80 HOH HOH . DB 19 HOH L 4 404 61 HOH HOH . DB 19 HOH L 5 405 41 HOH HOH . DB 19 HOH L 6 406 138 HOH HOH . DB 19 HOH L 7 407 140 HOH HOH . DB 19 HOH L 8 408 93 HOH HOH . DB 19 HOH L 9 409 119 HOH HOH . DB 19 HOH L 10 410 152 HOH HOH . EB 19 HOH M 1 301 11 HOH HOH . EB 19 HOH M 2 302 42 HOH HOH . EB 19 HOH M 3 303 131 HOH HOH . EB 19 HOH M 4 304 84 HOH HOH . EB 19 HOH M 5 305 132 HOH HOH . EB 19 HOH M 6 306 117 HOH HOH . EB 19 HOH M 7 307 101 HOH HOH . EB 19 HOH M 8 308 58 HOH HOH . EB 19 HOH M 9 309 13 HOH HOH . EB 19 HOH M 10 310 15 HOH HOH . EB 19 HOH M 11 311 160 HOH HOH . FB 19 HOH N 1 301 122 HOH HOH . FB 19 HOH N 2 302 39 HOH HOH . FB 19 HOH N 3 303 31 HOH HOH . FB 19 HOH N 4 304 103 HOH HOH . FB 19 HOH N 5 305 155 HOH HOH . FB 19 HOH N 6 306 14 HOH HOH . FB 19 HOH N 7 307 128 HOH HOH . FB 19 HOH N 8 308 10 HOH HOH . GB 19 HOH O 1 301 104 HOH HOH . HB 19 HOH P 1 301 64 HOH HOH . HB 19 HOH P 2 302 81 HOH HOH . HB 19 HOH P 3 303 89 HOH HOH . HB 19 HOH P 4 304 165 HOH HOH . HB 19 HOH P 5 305 106 HOH HOH . IB 19 HOH Q 1 301 114 HOH HOH . IB 19 HOH Q 2 302 121 HOH HOH . IB 19 HOH Q 3 303 5 HOH HOH . IB 19 HOH Q 4 304 34 HOH HOH . IB 19 HOH Q 5 305 147 HOH HOH . JB 19 HOH R 1 301 120 HOH HOH . JB 19 HOH R 2 302 126 HOH HOH . KB 19 HOH S 1 301 157 HOH HOH . KB 19 HOH S 2 302 35 HOH HOH . KB 19 HOH S 3 303 156 HOH HOH . LB 19 HOH T 1 301 24 HOH HOH . LB 19 HOH T 2 302 71 HOH HOH . LB 19 HOH T 3 303 47 HOH HOH . LB 19 HOH T 4 304 44 HOH HOH . LB 19 HOH T 5 305 154 HOH HOH . MB 19 HOH U 1 401 25 HOH HOH . MB 19 HOH U 2 402 36 HOH HOH . MB 19 HOH U 3 403 130 HOH HOH . MB 19 HOH U 4 404 139 HOH HOH . MB 19 HOH U 5 405 27 HOH HOH . MB 19 HOH U 6 406 2 HOH HOH . MB 19 HOH U 7 407 118 HOH HOH . MB 19 HOH U 8 408 127 HOH HOH . NB 19 HOH V 1 401 37 HOH HOH . NB 19 HOH V 2 402 73 HOH HOH . NB 19 HOH V 3 403 6 HOH HOH . NB 19 HOH V 4 404 26 HOH HOH . NB 19 HOH V 5 405 105 HOH HOH . NB 19 HOH V 6 406 51 HOH HOH . NB 19 HOH V 7 407 7 HOH HOH . OB 19 HOH W 1 301 92 HOH HOH . OB 19 HOH W 2 302 115 HOH HOH . OB 19 HOH W 3 303 54 HOH HOH . PB 19 HOH X 1 201 95 HOH HOH . PB 19 HOH X 2 202 99 HOH HOH . PB 19 HOH X 3 203 136 HOH HOH . PB 19 HOH X 4 204 33 HOH HOH . PB 19 HOH X 5 205 45 HOH HOH . PB 19 HOH X 6 206 77 HOH HOH . PB 19 HOH X 7 207 9 HOH HOH . PB 19 HOH X 8 208 72 HOH HOH . QB 19 HOH Y 1 401 78 HOH HOH . QB 19 HOH Y 2 402 66 HOH HOH . QB 19 HOH Y 3 403 96 HOH HOH . QB 19 HOH Y 4 404 56 HOH HOH . QB 19 HOH Y 5 405 146 HOH HOH . QB 19 HOH Y 6 406 137 HOH HOH . QB 19 HOH Y 7 407 141 HOH HOH . RB 19 HOH Z 1 401 86 HOH HOH . RB 19 HOH Z 2 402 17 HOH HOH . RB 19 HOH Z 3 403 70 HOH HOH . RB 19 HOH Z 4 404 153 HOH HOH . RB 19 HOH Z 5 405 166 HOH HOH . RB 19 HOH Z 6 406 48 HOH HOH . RB 19 HOH Z 7 407 82 HOH HOH . RB 19 HOH Z 8 408 49 HOH HOH . SB 19 HOH a 1 301 59 HOH HOH . SB 19 HOH a 2 302 168 HOH HOH . SB 19 HOH a 3 303 43 HOH HOH . SB 19 HOH a 4 304 149 HOH HOH . SB 19 HOH a 5 305 3 HOH HOH . SB 19 HOH a 6 306 74 HOH HOH . SB 19 HOH a 7 307 4 HOH HOH . SB 19 HOH a 8 308 23 HOH HOH . SB 19 HOH a 9 309 142 HOH HOH . SB 19 HOH a 10 310 18 HOH HOH . SB 19 HOH a 11 311 133 HOH HOH . TB 19 HOH b 1 201 22 HOH HOH . TB 19 HOH b 2 202 170 HOH HOH . TB 19 HOH b 3 203 97 HOH HOH . TB 19 HOH b 4 204 69 HOH HOH . TB 19 HOH b 5 205 28 HOH HOH . TB 19 HOH b 6 206 20 HOH HOH . TB 19 HOH b 7 207 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id KA _atom_site.label_entity_id 15 _atom_site.Cartn_x 6.8 _atom_site.Cartn_y -147.216 _atom_site.Cartn_z 7.479 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id K _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 1 #