data_5L6N
#
_model_server_result.job_id            oZEdQGlMBZNtIKDoNk4Ikg 
_model_server_result.datetime_utc      '2024-12-27 00:42:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l6n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":602}' 
#
_entry.id    5L6N 
#
_exptl.entry_id    5L6N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L6N 
_cell.length_a            44.546 
_cell.length_b            80.238 
_cell.length_c            91.369 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L6N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 293 1_555 B SG CYS 119 H CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 B SG CYS 28 H CYS 348 1_555 B SG CYS 44 H CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf3 B SG CYS 173 H CYS 493 1_555 B SG CYS 187 H CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 201 H CYS 521 1_555 B SG CYS 231 H CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
covale ? covale1 B ND2 ASN 53 H ASN 373 1_555 D C1 NAG . H NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 C C ASP 12 I ASP 31 1_555 C N TYS 13 I TYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 C C TYS 13 I TYS 32 1_555 C N ASP 14 I ASP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 C C GLU 15 I GLU 34 1_555 C N TYS 16 I TYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 C C TYS 16 I TYS 35 1_555 C N GLU 17 I GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 B O ARG 233 H ARG 553 1_555 E NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 B O LYS 236 H LYS 556 1_555 E NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc3 E NA NA . H NA 602 1_555 G O HOH . H HOH 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc4 E NA NA . H NA 602 1_555 G O HOH . H HOH 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc5 E NA NA . H NA 602 1_555 G O HOH . H HOH 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc6 E NA NA . H NA 602 1_555 G O HOH . H HOH 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5L6N 
_atom_sites.fract_transf_matrix[1][1]    0.022449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012463 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG H 1 601 1373 NAG NAG . 
E 5 NA H 1 602 1 NA NA . 
F 6 HOH L 1 401 175 HOH HOH . 
F 6 HOH L 2 402 209 HOH HOH . 
F 6 HOH L 3 403 3 HOH HOH . 
F 6 HOH L 4 404 29 HOH HOH . 
F 6 HOH L 5 405 2 HOH HOH . 
F 6 HOH L 6 406 80 HOH HOH . 
F 6 HOH L 7 407 144 HOH HOH . 
F 6 HOH L 8 408 81 HOH HOH . 
F 6 HOH L 9 409 79 HOH HOH . 
F 6 HOH L 10 410 28 HOH HOH . 
F 6 HOH L 11 411 84 HOH HOH . 
F 6 HOH L 12 412 142 HOH HOH . 
F 6 HOH L 13 413 32 HOH HOH . 
F 6 HOH L 14 414 86 HOH HOH . 
F 6 HOH L 15 415 199 HOH HOH . 
F 6 HOH L 16 416 137 HOH HOH . 
F 6 HOH L 17 417 211 HOH HOH . 
F 6 HOH L 18 418 210 HOH HOH . 
F 6 HOH L 19 419 87 HOH HOH . 
F 6 HOH L 20 420 132 HOH HOH . 
G 6 HOH H 1 701 100 HOH HOH . 
G 6 HOH H 2 702 178 HOH HOH . 
G 6 HOH H 3 703 183 HOH HOH . 
G 6 HOH H 4 704 72 HOH HOH . 
G 6 HOH H 5 705 141 HOH HOH . 
G 6 HOH H 6 706 103 HOH HOH . 
G 6 HOH H 7 707 166 HOH HOH . 
G 6 HOH H 8 708 151 HOH HOH . 
G 6 HOH H 9 709 34 HOH HOH . 
G 6 HOH H 10 710 228 HOH HOH . 
G 6 HOH H 11 711 185 HOH HOH . 
G 6 HOH H 12 712 18 HOH HOH . 
G 6 HOH H 13 713 207 HOH HOH . 
G 6 HOH H 14 714 170 HOH HOH . 
G 6 HOH H 15 715 66 HOH HOH . 
G 6 HOH H 16 716 97 HOH HOH . 
G 6 HOH H 17 717 30 HOH HOH . 
G 6 HOH H 18 718 114 HOH HOH . 
G 6 HOH H 19 719 149 HOH HOH . 
G 6 HOH H 20 720 234 HOH HOH . 
G 6 HOH H 21 721 53 HOH HOH . 
G 6 HOH H 22 722 65 HOH HOH . 
G 6 HOH H 23 723 26 HOH HOH . 
G 6 HOH H 24 724 134 HOH HOH . 
G 6 HOH H 25 725 51 HOH HOH . 
G 6 HOH H 26 726 43 HOH HOH . 
G 6 HOH H 27 727 83 HOH HOH . 
G 6 HOH H 28 728 189 HOH HOH . 
G 6 HOH H 29 729 133 HOH HOH . 
G 6 HOH H 30 730 111 HOH HOH . 
G 6 HOH H 31 731 31 HOH HOH . 
G 6 HOH H 32 732 63 HOH HOH . 
G 6 HOH H 33 733 19 HOH HOH . 
G 6 HOH H 34 734 9 HOH HOH . 
G 6 HOH H 35 735 10 HOH HOH . 
G 6 HOH H 36 736 67 HOH HOH . 
G 6 HOH H 37 737 48 HOH HOH . 
G 6 HOH H 38 738 16 HOH HOH . 
G 6 HOH H 39 739 125 HOH HOH . 
G 6 HOH H 40 740 14 HOH HOH . 
G 6 HOH H 41 741 42 HOH HOH . 
G 6 HOH H 42 742 105 HOH HOH . 
G 6 HOH H 43 743 130 HOH HOH . 
G 6 HOH H 44 744 78 HOH HOH . 
G 6 HOH H 45 745 69 HOH HOH . 
G 6 HOH H 46 746 73 HOH HOH . 
G 6 HOH H 47 747 37 HOH HOH . 
G 6 HOH H 48 748 222 HOH HOH . 
G 6 HOH H 49 749 17 HOH HOH . 
G 6 HOH H 50 750 150 HOH HOH . 
G 6 HOH H 51 751 172 HOH HOH . 
G 6 HOH H 52 752 45 HOH HOH . 
G 6 HOH H 53 753 225 HOH HOH . 
G 6 HOH H 54 754 59 HOH HOH . 
G 6 HOH H 55 755 123 HOH HOH . 
G 6 HOH H 56 756 120 HOH HOH . 
G 6 HOH H 57 757 107 HOH HOH . 
G 6 HOH H 58 758 70 HOH HOH . 
G 6 HOH H 59 759 57 HOH HOH . 
G 6 HOH H 60 760 128 HOH HOH . 
G 6 HOH H 61 761 124 HOH HOH . 
G 6 HOH H 62 762 200 HOH HOH . 
G 6 HOH H 63 763 24 HOH HOH . 
G 6 HOH H 64 764 106 HOH HOH . 
G 6 HOH H 65 765 109 HOH HOH . 
G 6 HOH H 66 766 46 HOH HOH . 
G 6 HOH H 67 767 22 HOH HOH . 
G 6 HOH H 68 768 52 HOH HOH . 
G 6 HOH H 69 769 154 HOH HOH . 
G 6 HOH H 70 770 156 HOH HOH . 
G 6 HOH H 71 771 38 HOH HOH . 
G 6 HOH H 72 772 12 HOH HOH . 
G 6 HOH H 73 773 219 HOH HOH . 
G 6 HOH H 74 774 182 HOH HOH . 
G 6 HOH H 75 775 5 HOH HOH . 
G 6 HOH H 76 776 163 HOH HOH . 
G 6 HOH H 77 777 15 HOH HOH . 
G 6 HOH H 78 778 167 HOH HOH . 
G 6 HOH H 79 779 152 HOH HOH . 
G 6 HOH H 80 780 7 HOH HOH . 
G 6 HOH H 81 781 161 HOH HOH . 
G 6 HOH H 82 782 58 HOH HOH . 
G 6 HOH H 83 783 113 HOH HOH . 
G 6 HOH H 84 784 61 HOH HOH . 
G 6 HOH H 85 785 47 HOH HOH . 
G 6 HOH H 86 786 25 HOH HOH . 
G 6 HOH H 87 787 6 HOH HOH . 
G 6 HOH H 88 788 56 HOH HOH . 
G 6 HOH H 89 789 158 HOH HOH . 
G 6 HOH H 90 790 13 HOH HOH . 
G 6 HOH H 91 791 68 HOH HOH . 
G 6 HOH H 92 792 129 HOH HOH . 
G 6 HOH H 93 793 195 HOH HOH . 
G 6 HOH H 94 794 4 HOH HOH . 
G 6 HOH H 95 795 21 HOH HOH . 
G 6 HOH H 96 796 71 HOH HOH . 
G 6 HOH H 97 797 201 HOH HOH . 
G 6 HOH H 98 798 8 HOH HOH . 
G 6 HOH H 99 799 55 HOH HOH . 
G 6 HOH H 100 800 160 HOH HOH . 
G 6 HOH H 101 801 162 HOH HOH . 
G 6 HOH H 102 802 112 HOH HOH . 
G 6 HOH H 103 803 221 HOH HOH . 
G 6 HOH H 104 804 194 HOH HOH . 
G 6 HOH H 105 805 223 HOH HOH . 
G 6 HOH H 106 806 89 HOH HOH . 
G 6 HOH H 107 807 230 HOH HOH . 
G 6 HOH H 108 808 1 HOH HOH . 
G 6 HOH H 109 809 165 HOH HOH . 
G 6 HOH H 110 810 20 HOH HOH . 
G 6 HOH H 111 811 102 HOH HOH . 
G 6 HOH H 112 812 213 HOH HOH . 
G 6 HOH H 113 813 90 HOH HOH . 
G 6 HOH H 114 814 54 HOH HOH . 
G 6 HOH H 115 815 215 HOH HOH . 
G 6 HOH H 116 816 127 HOH HOH . 
G 6 HOH H 117 817 96 HOH HOH . 
G 6 HOH H 118 818 104 HOH HOH . 
G 6 HOH H 119 819 23 HOH HOH . 
G 6 HOH H 120 820 64 HOH HOH . 
G 6 HOH H 121 821 77 HOH HOH . 
G 6 HOH H 122 822 117 HOH HOH . 
G 6 HOH H 123 823 44 HOH HOH . 
G 6 HOH H 124 824 60 HOH HOH . 
G 6 HOH H 125 825 197 HOH HOH . 
G 6 HOH H 126 826 91 HOH HOH . 
G 6 HOH H 127 827 164 HOH HOH . 
G 6 HOH H 128 828 115 HOH HOH . 
G 6 HOH H 129 829 99 HOH HOH . 
G 6 HOH H 130 830 146 HOH HOH . 
G 6 HOH H 131 831 39 HOH HOH . 
G 6 HOH H 132 832 116 HOH HOH . 
G 6 HOH H 133 833 198 HOH HOH . 
G 6 HOH H 134 834 36 HOH HOH . 
G 6 HOH H 135 835 35 HOH HOH . 
G 6 HOH H 136 836 202 HOH HOH . 
G 6 HOH H 137 837 191 HOH HOH . 
G 6 HOH H 138 838 204 HOH HOH . 
G 6 HOH H 139 839 224 HOH HOH . 
G 6 HOH H 140 840 49 HOH HOH . 
G 6 HOH H 141 841 206 HOH HOH . 
G 6 HOH H 142 842 174 HOH HOH . 
G 6 HOH H 143 843 62 HOH HOH . 
G 6 HOH H 144 844 27 HOH HOH . 
G 6 HOH H 145 845 157 HOH HOH . 
G 6 HOH H 146 846 138 HOH HOH . 
G 6 HOH H 147 847 11 HOH HOH . 
G 6 HOH H 148 848 226 HOH HOH . 
G 6 HOH H 149 849 153 HOH HOH . 
G 6 HOH H 150 850 122 HOH HOH . 
G 6 HOH H 151 851 220 HOH HOH . 
G 6 HOH H 152 852 139 HOH HOH . 
G 6 HOH H 153 853 232 HOH HOH . 
G 6 HOH H 154 854 41 HOH HOH . 
G 6 HOH H 155 855 176 HOH HOH . 
G 6 HOH H 156 856 126 HOH HOH . 
G 6 HOH H 157 857 33 HOH HOH . 
G 6 HOH H 158 858 229 HOH HOH . 
G 6 HOH H 159 859 76 HOH HOH . 
G 6 HOH H 160 860 205 HOH HOH . 
G 6 HOH H 161 861 40 HOH HOH . 
G 6 HOH H 162 862 110 HOH HOH . 
G 6 HOH H 163 863 196 HOH HOH . 
G 6 HOH H 164 864 143 HOH HOH . 
G 6 HOH H 165 865 145 HOH HOH . 
G 6 HOH H 166 866 148 HOH HOH . 
G 6 HOH H 167 867 179 HOH HOH . 
G 6 HOH H 168 868 171 HOH HOH . 
G 6 HOH H 169 869 216 HOH HOH . 
G 6 HOH H 170 870 177 HOH HOH . 
G 6 HOH H 171 871 159 HOH HOH . 
G 6 HOH H 172 872 93 HOH HOH . 
G 6 HOH H 173 873 218 HOH HOH . 
G 6 HOH H 174 874 92 HOH HOH . 
G 6 HOH H 175 875 85 HOH HOH . 
G 6 HOH H 176 876 147 HOH HOH . 
G 6 HOH H 177 877 192 HOH HOH . 
G 6 HOH H 178 878 101 HOH HOH . 
G 6 HOH H 179 879 135 HOH HOH . 
G 6 HOH H 180 880 227 HOH HOH . 
G 6 HOH H 181 881 235 HOH HOH . 
G 6 HOH H 182 882 186 HOH HOH . 
G 6 HOH H 183 883 193 HOH HOH . 
G 6 HOH H 184 884 95 HOH HOH . 
G 6 HOH H 185 885 94 HOH HOH . 
G 6 HOH H 186 886 214 HOH HOH . 
G 6 HOH H 187 887 217 HOH HOH . 
G 6 HOH H 188 888 208 HOH HOH . 
G 6 HOH H 189 889 168 HOH HOH . 
G 6 HOH H 190 890 212 HOH HOH . 
G 6 HOH H 191 891 169 HOH HOH . 
G 6 HOH H 192 892 140 HOH HOH . 
G 6 HOH H 193 893 82 HOH HOH . 
G 6 HOH H 194 894 131 HOH HOH . 
G 6 HOH H 195 895 155 HOH HOH . 
G 6 HOH H 196 896 88 HOH HOH . 
H 6 HOH I 1 101 233 HOH HOH . 
H 6 HOH I 2 102 184 HOH HOH . 
H 6 HOH I 3 103 108 HOH HOH . 
H 6 HOH I 4 104 121 HOH HOH . 
H 6 HOH I 5 105 187 HOH HOH . 
H 6 HOH I 6 106 119 HOH HOH . 
H 6 HOH I 7 107 50 HOH HOH . 
H 6 HOH I 8 108 98 HOH HOH . 
H 6 HOH I 9 109 118 HOH HOH . 
H 6 HOH I 10 110 181 HOH HOH . 
H 6 HOH I 11 111 74 HOH HOH . 
H 6 HOH I 12 112 173 HOH HOH . 
H 6 HOH I 13 113 75 HOH HOH . 
H 6 HOH I 14 114 203 HOH HOH . 
H 6 HOH I 15 115 180 HOH HOH . 
H 6 HOH I 16 116 136 HOH HOH . 
H 6 HOH I 17 117 190 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               26.707 
_atom_site.Cartn_y               10.193 
_atom_site.Cartn_z               20.593 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#