data_5L6W
#
_model_server_result.job_id            UdKFMMf8csUpC-2i3bZRog 
_model_server_result.datetime_utc      '2024-10-10 23:37:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l6w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    5L6W 
#
_exptl.entry_id    5L6W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5L6W 
_cell.length_a            80.679 
_cell.length_b            80.679 
_cell.length_c            237.59 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L6W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     5L6W 
_atom_sites.fract_transf_matrix[1][1]    0.012395 
_atom_sites.fract_transf_matrix[1][2]    0.007156 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014312 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           AGS 
_pdbx_nonpoly_scheme.pdb_strand_id    L 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      701 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       AGS 
_pdbx_nonpoly_scheme.auth_mon_id      AGS 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . C 3 -16.135 34.3 20.593 1 170.19 ? PG AGS 701 L 1 
HETATM 2 S S1G AGS . . . C 3 -18.031 34.497 20.81 1 120.82 ? S1G AGS 701 L 1 
HETATM 3 O O2G AGS . . . C 3 -15.619 34.186 19.049 1 98.21 ? O2G AGS 701 L 1 
HETATM 4 O O3G AGS . . . C 3 -15.709 32.808 20.813 1 168.5 ? O3G AGS 701 L 1 
HETATM 5 P PB AGS . . . C 3 -14.538 36.678 21.937 1 139.4 ? PB AGS 701 L 1 
HETATM 6 O O1B AGS . . . C 3 -13.858 37.514 20.849 1 136.68 ? O1B AGS 701 L 1 
HETATM 7 O O2B AGS . . . C 3 -13.532 36.696 23.017 1 107.96 ? O2B AGS 701 L 1 
HETATM 8 O O3B AGS . . . C 3 -14.999 35.196 21.523 1 146.69 ? O3B AGS 701 L 1 
HETATM 9 P PA AGS . . . C 3 -16.394 38.958 21.956 1 168.54 ? PA AGS 701 L 1 
HETATM 10 O O1A AGS . . . C 3 -17.099 38.896 20.664 1 101.14 ? O1A AGS 701 L 1 
HETATM 11 O O2A AGS . . . C 3 -17.372 39.457 23.038 1 160.21 ? O2A AGS 701 L 1 
HETATM 12 O O3A AGS . . . C 3 -15.856 37.497 22.309 1 161.94 ? O3A AGS 701 L 1 
HETATM 13 O O5' AGS . . . C 3 -15.092 39.901 22.114 1 172.44 ? O5' AGS 701 L 1 
HETATM 14 C C5' AGS . . . C 3 -14.876 40.558 23.382 1 163.58 ? C5' AGS 701 L 1 
HETATM 15 C C4' AGS . . . C 3 -13.457 41.06 23.524 1 161.73 ? C4' AGS 701 L 1 
HETATM 16 O O4' AGS . . . C 3 -13.496 42.503 23.654 1 137.22 ? O4' AGS 701 L 1 
HETATM 17 C C3' AGS . . . C 3 -12.658 40.542 24.74 1 142.83 ? C3' AGS 701 L 1 
HETATM 18 O O3' AGS . . . C 3 -11.809 39.425 24.463 1 105.23 ? O3' AGS 701 L 1 
HETATM 19 C C2' AGS . . . C 3 -11.818 41.762 25.117 1 133.7 ? C2' AGS 701 L 1 
HETATM 20 O O2' AGS . . . C 3 -10.684 41.881 24.264 1 138.06 ? O2' AGS 701 L 1 
HETATM 21 C C1' AGS . . . C 3 -12.796 42.895 24.816 1 130.16 ? C1' AGS 701 L 1 
HETATM 22 N N9 AGS . . . C 3 -13.759 43.161 25.883 1 134.88 ? N9 AGS 701 L 1 
HETATM 23 C C8 AGS . . . C 3 -15.038 42.681 26.022 1 128.43 ? C8 AGS 701 L 1 
HETATM 24 N N7 AGS . . . C 3 -15.641 43.068 27.12 1 115.07 ? N7 AGS 701 L 1 
HETATM 25 C C5 AGS . . . C 3 -14.694 43.859 27.753 1 121.93 ? C5 AGS 701 L 1 
HETATM 26 C C6 AGS . . . C 3 -14.705 44.556 28.975 1 105.12 ? C6 AGS 701 L 1 
HETATM 27 N N6 AGS . . . C 3 -15.699 44.486 29.85 1 85.7 ? N6 AGS 701 L 1 
HETATM 28 N N1 AGS . . . C 3 -13.608 45.281 29.298 1 125.94 ? N1 AGS 701 L 1 
HETATM 29 C C2 AGS . . . C 3 -12.559 45.276 28.46 1 142.36 ? C2 AGS 701 L 1 
HETATM 30 N N3 AGS . . . C 3 -12.417 44.631 27.295 1 141.41 ? N3 AGS 701 L 1 
HETATM 31 C C4 AGS . . . C 3 -13.532 43.936 26.995 1 141.15 ? C4 AGS 701 L 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#