data_5L73 # _model_server_result.job_id DbJZ5SnjSXslF7UEgEu0Rg _model_server_result.datetime_utc '2024-10-20 01:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 5L73 # _exptl.entry_id 5L73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.215 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIS(HYDROXYETHYL)AMINOMETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L73 _cell.length_a 46.172 _cell.length_b 59.558 _cell.length_c 136.654 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 650 1_555 A SG CYS 34 A CYS 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf2 A SG CYS 94 A CYS 721 1_555 A SG CYS 182 A CYS 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 B SG CYS 23 B CYS 650 1_555 B SG CYS 34 B CYS 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 B SG CYS 94 B CYS 721 1_555 B SG CYS 182 B CYS 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc1 A O GLU 24 A GLU 651 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A OE2 GLU 24 A GLU 651 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A OD2 ASP 58 A ASP 685 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 A OD1 ASP 58 A ASP 685 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 A O ASN 64 A ASN 691 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc6 A OD1 ASP 169 A ASP 796 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 A OD2 ASP 169 A ASP 796 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc8 C CA CA . A CA 901 1_555 J O HOH . A HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 D CA CA . A CA 902 1_555 E O22 BCN . A BCN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc10 D CA CA . A CA 902 1_555 E O4 BCN . A BCN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc11 D CA CA . A CA 902 1_555 E O6 BCN . A BCN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc12 D CA CA . A CA 902 1_555 J O HOH . A HOH 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc13 D CA CA . A CA 902 1_555 J O HOH . A HOH 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc14 B O GLU 24 B GLU 651 1_555 G CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc15 B OE2 GLU 24 B GLU 651 1_555 G CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc16 B OD2 ASP 58 B ASP 685 1_555 G CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc17 B OD1 ASP 58 B ASP 685 1_555 H CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc18 B OG1 THR 60 B THR 687 1_555 H CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc19 B O ASN 64 B ASN 691 1_555 G CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc20 B OD1 ASP 169 B ASP 796 1_555 G CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc21 B OD2 ASP 169 B ASP 796 1_555 G CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc22 G CA CA . B CA 901 1_555 K O HOH . B HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc23 H CA CA . B CA 902 1_555 I O21 BCN . B BCN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc24 H CA CA . B CA 902 1_555 I O4 BCN . B BCN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc25 H CA CA . B CA 902 1_555 I O6 BCN . B BCN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc26 H CA CA . B CA 902 1_555 K O HOH . B HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C7 H17 N O3' _chem_comp.formula_weight 163.215 _chem_comp.id TAM _chem_comp.mon_nstd_flag . _chem_comp.name TRIS(HYDROXYETHYL)AMINOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TAM sing 313 n n C C2 TAM sing 314 n n C C3 TAM sing 315 n n C N TAM sing 316 n n C1 C4 TAM sing 317 n n C1 H11 TAM sing 318 n n C1 H12 TAM sing 319 n n C2 C5 TAM sing 320 n n C2 H21 TAM sing 321 n n C2 H22 TAM sing 322 n n C3 C6 TAM sing 323 n n C3 H31 TAM sing 324 n n C3 H32 TAM sing 325 n n C4 O4 TAM sing 326 n n C4 H41 TAM sing 327 n n C4 H42 TAM sing 328 n n C5 O5 TAM sing 329 n n C5 H51 TAM sing 330 n n C5 H52 TAM sing 331 n n C6 O6 TAM sing 332 n n C6 H61 TAM sing 333 n n C6 H62 TAM sing 334 n n N HN1 TAM sing 335 n n N HN2 TAM sing 336 n n O4 HO4 TAM sing 337 n n O5 HO5 TAM sing 338 n n O6 HO6 TAM sing 339 n n # _atom_sites.entry_id 5L73 _atom_sites.fract_transf_matrix[1][1] 0.021658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 901 1 CA CA . D 2 CA A 1 902 2 CA CA . E 3 BCN A 1 903 1 BCN BCN . F 4 TAM A 1 904 1 TAM TAM . G 2 CA B 1 901 3 CA CA . H 2 CA B 1 902 4 CA CA . I 3 BCN B 1 903 2 BCN BCN . J 5 HOH A 1 1001 16 HOH HOH . J 5 HOH A 2 1002 53 HOH HOH . J 5 HOH A 3 1003 120 HOH HOH . J 5 HOH A 4 1004 60 HOH HOH . J 5 HOH A 5 1005 89 HOH HOH . J 5 HOH A 6 1006 116 HOH HOH . J 5 HOH A 7 1007 32 HOH HOH . J 5 HOH A 8 1008 48 HOH HOH . J 5 HOH A 9 1009 40 HOH HOH . J 5 HOH A 10 1010 37 HOH HOH . J 5 HOH A 11 1011 43 HOH HOH . J 5 HOH A 12 1012 19 HOH HOH . J 5 HOH A 13 1013 28 HOH HOH . J 5 HOH A 14 1014 2 HOH HOH . J 5 HOH A 15 1015 81 HOH HOH . J 5 HOH A 16 1016 115 HOH HOH . J 5 HOH A 17 1017 117 HOH HOH . J 5 HOH A 18 1018 84 HOH HOH . J 5 HOH A 19 1019 12 HOH HOH . J 5 HOH A 20 1020 8 HOH HOH . J 5 HOH A 21 1021 102 HOH HOH . J 5 HOH A 22 1022 25 HOH HOH . J 5 HOH A 23 1023 58 HOH HOH . J 5 HOH A 24 1024 5 HOH HOH . J 5 HOH A 25 1025 108 HOH HOH . J 5 HOH A 26 1026 13 HOH HOH . J 5 HOH A 27 1027 4 HOH HOH . J 5 HOH A 28 1028 44 HOH HOH . J 5 HOH A 29 1029 83 HOH HOH . J 5 HOH A 30 1030 23 HOH HOH . J 5 HOH A 31 1031 97 HOH HOH . J 5 HOH A 32 1032 75 HOH HOH . J 5 HOH A 33 1033 1 HOH HOH . J 5 HOH A 34 1034 119 HOH HOH . J 5 HOH A 35 1035 7 HOH HOH . J 5 HOH A 36 1036 35 HOH HOH . J 5 HOH A 37 1037 3 HOH HOH . J 5 HOH A 38 1038 105 HOH HOH . J 5 HOH A 39 1039 38 HOH HOH . J 5 HOH A 40 1040 110 HOH HOH . J 5 HOH A 41 1041 79 HOH HOH . J 5 HOH A 42 1042 85 HOH HOH . J 5 HOH A 43 1043 118 HOH HOH . J 5 HOH A 44 1044 47 HOH HOH . J 5 HOH A 45 1045 98 HOH HOH . J 5 HOH A 46 1046 67 HOH HOH . J 5 HOH A 47 1047 92 HOH HOH . J 5 HOH A 48 1048 76 HOH HOH . J 5 HOH A 49 1049 93 HOH HOH . J 5 HOH A 50 1050 80 HOH HOH . J 5 HOH A 51 1051 54 HOH HOH . J 5 HOH A 52 1052 56 HOH HOH . J 5 HOH A 53 1053 64 HOH HOH . J 5 HOH A 54 1054 14 HOH HOH . J 5 HOH A 55 1055 57 HOH HOH . J 5 HOH A 56 1056 50 HOH HOH . J 5 HOH A 57 1057 96 HOH HOH . J 5 HOH A 58 1058 87 HOH HOH . J 5 HOH A 59 1059 61 HOH HOH . J 5 HOH A 60 1060 49 HOH HOH . J 5 HOH A 61 1061 24 HOH HOH . J 5 HOH A 62 1062 68 HOH HOH . J 5 HOH A 63 1063 59 HOH HOH . J 5 HOH A 64 1064 107 HOH HOH . J 5 HOH A 65 1065 6 HOH HOH . J 5 HOH A 66 1066 99 HOH HOH . J 5 HOH A 67 1067 72 HOH HOH . J 5 HOH A 68 1068 109 HOH HOH . J 5 HOH A 69 1069 106 HOH HOH . J 5 HOH A 70 1070 65 HOH HOH . J 5 HOH A 71 1071 122 HOH HOH . K 5 HOH B 1 1001 21 HOH HOH . K 5 HOH B 2 1002 91 HOH HOH . K 5 HOH B 3 1003 41 HOH HOH . K 5 HOH B 4 1004 39 HOH HOH . K 5 HOH B 5 1005 46 HOH HOH . K 5 HOH B 6 1006 33 HOH HOH . K 5 HOH B 7 1007 88 HOH HOH . K 5 HOH B 8 1008 101 HOH HOH . K 5 HOH B 9 1009 78 HOH HOH . K 5 HOH B 10 1010 45 HOH HOH . K 5 HOH B 11 1011 34 HOH HOH . K 5 HOH B 12 1012 66 HOH HOH . K 5 HOH B 13 1013 51 HOH HOH . K 5 HOH B 14 1014 31 HOH HOH . K 5 HOH B 15 1015 121 HOH HOH . K 5 HOH B 16 1016 17 HOH HOH . K 5 HOH B 17 1017 36 HOH HOH . K 5 HOH B 18 1018 112 HOH HOH . K 5 HOH B 19 1019 18 HOH HOH . K 5 HOH B 20 1020 9 HOH HOH . K 5 HOH B 21 1021 90 HOH HOH . K 5 HOH B 22 1022 30 HOH HOH . K 5 HOH B 23 1023 20 HOH HOH . K 5 HOH B 24 1024 103 HOH HOH . K 5 HOH B 25 1025 26 HOH HOH . K 5 HOH B 26 1026 94 HOH HOH . K 5 HOH B 27 1027 15 HOH HOH . K 5 HOH B 28 1028 55 HOH HOH . K 5 HOH B 29 1029 10 HOH HOH . K 5 HOH B 30 1030 100 HOH HOH . K 5 HOH B 31 1031 22 HOH HOH . K 5 HOH B 32 1032 82 HOH HOH . K 5 HOH B 33 1033 27 HOH HOH . K 5 HOH B 34 1034 86 HOH HOH . K 5 HOH B 35 1035 104 HOH HOH . K 5 HOH B 36 1036 63 HOH HOH . K 5 HOH B 37 1037 113 HOH HOH . K 5 HOH B 38 1038 52 HOH HOH . K 5 HOH B 39 1039 71 HOH HOH . K 5 HOH B 40 1040 114 HOH HOH . K 5 HOH B 41 1041 42 HOH HOH . K 5 HOH B 42 1042 29 HOH HOH . K 5 HOH B 43 1043 69 HOH HOH . K 5 HOH B 44 1044 70 HOH HOH . K 5 HOH B 45 1045 74 HOH HOH . K 5 HOH B 46 1046 111 HOH HOH . K 5 HOH B 47 1047 11 HOH HOH . K 5 HOH B 48 1048 77 HOH HOH . K 5 HOH B 49 1049 62 HOH HOH . K 5 HOH B 50 1050 73 HOH HOH . K 5 HOH B 51 1051 95 HOH HOH . K 5 HOH B 52 1052 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TAM . . . F 4 29.812 -21.821 -35.337 1 29.73 ? C TAM 904 A 1 HETATM 2 C C1 TAM . . . F 4 28.601 -20.94 -35.023 1 31.92 ? C1 TAM 904 A 1 HETATM 3 C C2 TAM . . . F 4 29.619 -22.424 -36.716 1 28.4 ? C2 TAM 904 A 1 HETATM 4 C C3 TAM . . . F 4 30.999 -20.891 -35.301 1 29.83 ? C3 TAM 904 A 1 HETATM 5 C C4 TAM . . . F 4 27.204 -21.415 -35.443 1 30.96 ? C4 TAM 904 A 1 HETATM 6 C C5 TAM . . . F 4 30.816 -22.884 -37.487 1 27.2 ? C5 TAM 904 A 1 HETATM 7 C C6 TAM . . . F 4 32.38 -21.475 -35.041 1 27.82 ? C6 TAM 904 A 1 HETATM 8 N N TAM . . . F 4 29.904 -22.827 -34.268 1 28.43 ? N TAM 904 A 1 HETATM 9 O O4 TAM . . . F 4 26.354 -20.286 -35.353 1 34.38 ? O4 TAM 904 A 1 HETATM 10 O O5 TAM . . . F 4 31.438 -23.981 -36.876 1 25.44 ? O5 TAM 904 A 1 HETATM 11 O O6 TAM . . . F 4 33.213 -20.56 -35.76 1 25.89 ? O6 TAM 904 A 1 # _model_server_stats.io_time_ms 206 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #