data_5L74
#
_model_server_result.job_id            2Fmm1azRTTvA_avuNqJzxA 
_model_server_result.datetime_utc      '2024-12-24 16:51:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l74 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":903}' 
#
_entry.id    5L74 
#
_exptl.entry_id    5L74 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.7 
_cell.angle_gamma         90 
_cell.entry_id            5L74 
_cell.length_a            107.71 
_cell.length_b            44.56 
_cell.length_c            33.01 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L74 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 656 1_555 A SG CYS 20 A CYS 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 A SG CYS 10 A CYS 662 1_555 A SG CYS 49 A CYS 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 13 A CYS 665 1_555 A SG CYS 29 A CYS 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 A SG CYS 23 A CYS 675 1_555 A SG CYS 36 A CYS 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf5 A SG CYS 87 A CYS 739 1_555 A SG CYS 110 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
covale ? covale1 A ND2 ASN 3 A ASN 655 1_555 D C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 A ND2 ASN 104 A ASN 756 1_555 B C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? 
covale ? covale3 A ND2 ASN 112 A ASN 764 1_555 C C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
metalc ? metalc1 A O LYS 24 A LYS 676 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc2 A O LEU 52 A LEU 704 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
metalc ? metalc3 A OD1 ASN 141 A ASN 793 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc4 E NA NA . A NA 904 1_555 H O HOH . A HOH 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 E NA NA . A NA 904 1_555 H O HOH . A HOH 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5L74 
_atom_sites.fract_transf_matrix[1][1]    0.009284 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002436 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022442 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031319 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 901 804 NAG NAG . 
C 2 NAG A 1 902 805 NAG NAG . 
D 2 NAG A 1 903 806 NAG NAG . 
E 3 NA A 1 904 910 NA NA . 
F 3 NA A 1 905 911 NA NA . 
G 4 CL A 1 906 912 CL CL . 
H 5 HOH A 1 1001 906 HOH HOH . 
H 5 HOH A 2 1002 904 HOH HOH . 
H 5 HOH A 3 1003 882 HOH HOH . 
H 5 HOH A 4 1004 856 HOH HOH . 
H 5 HOH A 5 1005 896 HOH HOH . 
H 5 HOH A 6 1006 815 HOH HOH . 
H 5 HOH A 7 1007 843 HOH HOH . 
H 5 HOH A 8 1008 840 HOH HOH . 
H 5 HOH A 9 1009 884 HOH HOH . 
H 5 HOH A 10 1010 826 HOH HOH . 
H 5 HOH A 11 1011 814 HOH HOH . 
H 5 HOH A 12 1012 890 HOH HOH . 
H 5 HOH A 13 1013 898 HOH HOH . 
H 5 HOH A 14 1014 845 HOH HOH . 
H 5 HOH A 15 1015 872 HOH HOH . 
H 5 HOH A 16 1016 876 HOH HOH . 
H 5 HOH A 17 1017 820 HOH HOH . 
H 5 HOH A 18 1018 846 HOH HOH . 
H 5 HOH A 19 1019 875 HOH HOH . 
H 5 HOH A 20 1020 842 HOH HOH . 
H 5 HOH A 21 1021 821 HOH HOH . 
H 5 HOH A 22 1022 818 HOH HOH . 
H 5 HOH A 23 1023 808 HOH HOH . 
H 5 HOH A 24 1024 888 HOH HOH . 
H 5 HOH A 25 1025 902 HOH HOH . 
H 5 HOH A 26 1026 816 HOH HOH . 
H 5 HOH A 27 1027 807 HOH HOH . 
H 5 HOH A 28 1028 858 HOH HOH . 
H 5 HOH A 29 1029 891 HOH HOH . 
H 5 HOH A 30 1030 811 HOH HOH . 
H 5 HOH A 31 1031 899 HOH HOH . 
H 5 HOH A 32 1032 881 HOH HOH . 
H 5 HOH A 33 1033 841 HOH HOH . 
H 5 HOH A 34 1034 847 HOH HOH . 
H 5 HOH A 35 1035 867 HOH HOH . 
H 5 HOH A 36 1036 889 HOH HOH . 
H 5 HOH A 37 1037 824 HOH HOH . 
H 5 HOH A 38 1038 883 HOH HOH . 
H 5 HOH A 39 1039 877 HOH HOH . 
H 5 HOH A 40 1040 866 HOH HOH . 
H 5 HOH A 41 1041 893 HOH HOH . 
H 5 HOH A 42 1042 837 HOH HOH . 
H 5 HOH A 43 1043 836 HOH HOH . 
H 5 HOH A 44 1044 855 HOH HOH . 
H 5 HOH A 45 1045 870 HOH HOH . 
H 5 HOH A 46 1046 897 HOH HOH . 
H 5 HOH A 47 1047 850 HOH HOH . 
H 5 HOH A 48 1048 817 HOH HOH . 
H 5 HOH A 49 1049 851 HOH HOH . 
H 5 HOH A 50 1050 810 HOH HOH . 
H 5 HOH A 51 1051 813 HOH HOH . 
H 5 HOH A 52 1052 909 HOH HOH . 
H 5 HOH A 53 1053 865 HOH HOH . 
H 5 HOH A 54 1054 828 HOH HOH . 
H 5 HOH A 55 1055 863 HOH HOH . 
H 5 HOH A 56 1056 838 HOH HOH . 
H 5 HOH A 57 1057 849 HOH HOH . 
H 5 HOH A 58 1058 914 HOH HOH . 
H 5 HOH A 59 1059 908 HOH HOH . 
H 5 HOH A 60 1060 861 HOH HOH . 
H 5 HOH A 61 1061 819 HOH HOH . 
H 5 HOH A 62 1062 825 HOH HOH . 
H 5 HOH A 63 1063 886 HOH HOH . 
H 5 HOH A 64 1064 885 HOH HOH . 
H 5 HOH A 65 1065 823 HOH HOH . 
H 5 HOH A 66 1066 839 HOH HOH . 
H 5 HOH A 67 1067 900 HOH HOH . 
H 5 HOH A 68 1068 878 HOH HOH . 
H 5 HOH A 69 1069 879 HOH HOH . 
H 5 HOH A 70 1070 871 HOH HOH . 
H 5 HOH A 71 1071 895 HOH HOH . 
H 5 HOH A 72 1072 812 HOH HOH . 
H 5 HOH A 73 1073 844 HOH HOH . 
H 5 HOH A 74 1074 907 HOH HOH . 
H 5 HOH A 75 1075 822 HOH HOH . 
H 5 HOH A 76 1076 809 HOH HOH . 
H 5 HOH A 77 1077 894 HOH HOH . 
H 5 HOH A 78 1078 852 HOH HOH . 
H 5 HOH A 79 1079 854 HOH HOH . 
H 5 HOH A 80 1080 892 HOH HOH . 
H 5 HOH A 81 1081 874 HOH HOH . 
H 5 HOH A 82 1082 905 HOH HOH . 
H 5 HOH A 83 1083 869 HOH HOH . 
H 5 HOH A 84 1084 848 HOH HOH . 
H 5 HOH A 85 1085 862 HOH HOH . 
H 5 HOH A 86 1086 827 HOH HOH . 
H 5 HOH A 87 1087 903 HOH HOH . 
H 5 HOH A 88 1088 864 HOH HOH . 
H 5 HOH A 89 1089 887 HOH HOH . 
H 5 HOH A 90 1090 901 HOH HOH . 
H 5 HOH A 91 1091 853 HOH HOH . 
H 5 HOH A 92 1092 868 HOH HOH . 
H 5 HOH A 93 1093 880 HOH HOH . 
H 5 HOH A 94 1094 913 HOH HOH . 
H 5 HOH A 95 1095 857 HOH HOH . 
H 5 HOH A 96 1096 859 HOH HOH . 
H 5 HOH A 97 1097 873 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 2 32.654 10.141 34.977 1 25.98 ? C1 NAG 903 A 1 
HETATM 2 C C2 NAG . . . D 2 31.953 8.817 35.295 1 28.96 ? C2 NAG 903 A 1 
HETATM 3 C C3 NAG . . . D 2 32.264 8.378 36.73 1 29.75 ? C3 NAG 903 A 1 
HETATM 4 C C4 NAG . . . D 2 33.766 8.343 36.978 1 30.53 ? C4 NAG 903 A 1 
HETATM 5 C C5 NAG . . . D 2 34.451 9.645 36.568 1 30.4 ? C5 NAG 903 A 1 
HETATM 6 C C6 NAG . . . D 2 35.954 9.496 36.572 1 31.6 ? C6 NAG 903 A 1 
HETATM 7 C C7 NAG . . . D 2 29.869 8.343 34.054 1 31.23 ? C7 NAG 903 A 1 
HETATM 8 C C8 NAG . . . D 2 28.371 8.511 34.031 1 30.64 ? C8 NAG 903 A 1 
HETATM 9 N N2 NAG . . . D 2 30.511 8.901 35.093 1 30.7 ? N2 NAG 903 A 1 
HETATM 10 O O3 NAG . . . D 2 31.742 7.067 36.932 1 30.28 ? O3 NAG 903 A 1 
HETATM 11 O O4 NAG . . . D 2 34.033 8.108 38.357 1 31.02 ? O4 NAG 903 A 1 
HETATM 12 O O5 NAG . . . D 2 34.09 10.008 35.226 1 28.91 ? O5 NAG 903 A 1 
HETATM 13 O O6 NAG . . . D 2 36.593 10.759 36.475 1 33.35 ? O6 NAG 903 A 1 
HETATM 14 O O7 NAG . . . D 2 30.47 7.726 33.172 1 32.5 ? O7 NAG 903 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           390 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#