data_5L7E # _model_server_result.job_id 8oKRwgxQiVo8bsUfGaIJFw _model_server_result.datetime_utc '2024-11-04 23:46:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 5L7E # _exptl.entry_id 5L7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L7E _cell.length_a 48.62 _cell.length_b 77.83 _cell.length_c 78.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 290 n n C1 H11 MPD sing 291 n n C1 H12 MPD sing 292 n n C1 H13 MPD sing 293 n n C2 O2 MPD sing 294 n n C2 CM MPD sing 295 n n C2 C3 MPD sing 296 n n O2 HO2 MPD sing 297 n n CM HM1 MPD sing 298 n n CM HM2 MPD sing 299 n n CM HM3 MPD sing 300 n n C3 C4 MPD sing 301 n n C3 H31 MPD sing 302 n n C3 H32 MPD sing 303 n n C4 O4 MPD sing 304 n n C4 C5 MPD sing 305 n n C4 H4 MPD sing 306 n n O4 HO4 MPD sing 307 n n C5 H51 MPD sing 308 n n C5 H52 MPD sing 309 n n C5 H53 MPD sing 310 n n # _atom_sites.entry_id 5L7E _atom_sites.fract_transf_matrix[1][1] 0.020568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NHE A 1 1101 1 NHE NHE . D 4 MPD A 1 1102 2 MPD MPD . E 5 SO4 A 1 1103 3 SO4 SO4 . F 6 EDO A 1 1104 4 EDO EDO . G 6 EDO A 1 1105 5 EDO EDO . H 7 6Q0 A 1 1106 1 6Q0 INH . I 8 HOH A 1 1201 38 HOH HOH . I 8 HOH A 2 1202 105 HOH HOH . I 8 HOH A 3 1203 89 HOH HOH . I 8 HOH A 4 1204 96 HOH HOH . I 8 HOH A 5 1205 79 HOH HOH . I 8 HOH A 6 1206 34 HOH HOH . I 8 HOH A 7 1207 164 HOH HOH . I 8 HOH A 8 1208 1 HOH HOH . I 8 HOH A 9 1209 72 HOH HOH . I 8 HOH A 10 1210 108 HOH HOH . I 8 HOH A 11 1211 85 HOH HOH . I 8 HOH A 12 1212 2 HOH HOH . I 8 HOH A 13 1213 133 HOH HOH . I 8 HOH A 14 1214 46 HOH HOH . I 8 HOH A 15 1215 165 HOH HOH . I 8 HOH A 16 1216 49 HOH HOH . I 8 HOH A 17 1217 43 HOH HOH . I 8 HOH A 18 1218 83 HOH HOH . I 8 HOH A 19 1219 13 HOH HOH . I 8 HOH A 20 1220 37 HOH HOH . I 8 HOH A 21 1221 23 HOH HOH . I 8 HOH A 22 1222 25 HOH HOH . I 8 HOH A 23 1223 127 HOH HOH . I 8 HOH A 24 1224 162 HOH HOH . I 8 HOH A 25 1225 123 HOH HOH . I 8 HOH A 26 1226 15 HOH HOH . I 8 HOH A 27 1227 57 HOH HOH . I 8 HOH A 28 1228 120 HOH HOH . I 8 HOH A 29 1229 73 HOH HOH . I 8 HOH A 30 1230 112 HOH HOH . I 8 HOH A 31 1231 32 HOH HOH . I 8 HOH A 32 1232 36 HOH HOH . I 8 HOH A 33 1233 48 HOH HOH . I 8 HOH A 34 1234 3 HOH HOH . I 8 HOH A 35 1235 145 HOH HOH . I 8 HOH A 36 1236 29 HOH HOH . I 8 HOH A 37 1237 91 HOH HOH . I 8 HOH A 38 1238 149 HOH HOH . I 8 HOH A 39 1239 54 HOH HOH . I 8 HOH A 40 1240 147 HOH HOH . I 8 HOH A 41 1241 114 HOH HOH . I 8 HOH A 42 1242 4 HOH HOH . I 8 HOH A 43 1243 130 HOH HOH . I 8 HOH A 44 1244 86 HOH HOH . I 8 HOH A 45 1245 141 HOH HOH . I 8 HOH A 46 1246 16 HOH HOH . I 8 HOH A 47 1247 17 HOH HOH . I 8 HOH A 48 1248 139 HOH HOH . I 8 HOH A 49 1249 131 HOH HOH . I 8 HOH A 50 1250 140 HOH HOH . I 8 HOH A 51 1251 80 HOH HOH . I 8 HOH A 52 1252 10 HOH HOH . I 8 HOH A 53 1253 92 HOH HOH . I 8 HOH A 54 1254 47 HOH HOH . I 8 HOH A 55 1255 9 HOH HOH . I 8 HOH A 56 1256 6 HOH HOH . I 8 HOH A 57 1257 27 HOH HOH . I 8 HOH A 58 1258 24 HOH HOH . I 8 HOH A 59 1259 12 HOH HOH . I 8 HOH A 60 1260 103 HOH HOH . I 8 HOH A 61 1261 71 HOH HOH . I 8 HOH A 62 1262 22 HOH HOH . I 8 HOH A 63 1263 56 HOH HOH . I 8 HOH A 64 1264 45 HOH HOH . I 8 HOH A 65 1265 52 HOH HOH . I 8 HOH A 66 1266 100 HOH HOH . I 8 HOH A 67 1267 122 HOH HOH . I 8 HOH A 68 1268 144 HOH HOH . I 8 HOH A 69 1269 75 HOH HOH . I 8 HOH A 70 1270 65 HOH HOH . I 8 HOH A 71 1271 125 HOH HOH . I 8 HOH A 72 1272 18 HOH HOH . I 8 HOH A 73 1273 82 HOH HOH . I 8 HOH A 74 1274 21 HOH HOH . I 8 HOH A 75 1275 117 HOH HOH . I 8 HOH A 76 1276 160 HOH HOH . I 8 HOH A 77 1277 40 HOH HOH . I 8 HOH A 78 1278 7 HOH HOH . I 8 HOH A 79 1279 94 HOH HOH . I 8 HOH A 80 1280 51 HOH HOH . I 8 HOH A 81 1281 26 HOH HOH . I 8 HOH A 82 1282 74 HOH HOH . I 8 HOH A 83 1283 88 HOH HOH . I 8 HOH A 84 1284 8 HOH HOH . I 8 HOH A 85 1285 76 HOH HOH . I 8 HOH A 86 1286 14 HOH HOH . I 8 HOH A 87 1287 174 HOH HOH . I 8 HOH A 88 1288 42 HOH HOH . I 8 HOH A 89 1289 106 HOH HOH . I 8 HOH A 90 1290 28 HOH HOH . I 8 HOH A 91 1291 64 HOH HOH . I 8 HOH A 92 1292 177 HOH HOH . I 8 HOH A 93 1293 35 HOH HOH . I 8 HOH A 94 1294 107 HOH HOH . I 8 HOH A 95 1295 95 HOH HOH . I 8 HOH A 96 1296 110 HOH HOH . I 8 HOH A 97 1297 68 HOH HOH . I 8 HOH A 98 1298 102 HOH HOH . I 8 HOH A 99 1299 20 HOH HOH . I 8 HOH A 100 1300 166 HOH HOH . I 8 HOH A 101 1301 70 HOH HOH . I 8 HOH A 102 1302 39 HOH HOH . I 8 HOH A 103 1303 62 HOH HOH . I 8 HOH A 104 1304 78 HOH HOH . I 8 HOH A 105 1305 138 HOH HOH . I 8 HOH A 106 1306 128 HOH HOH . I 8 HOH A 107 1307 126 HOH HOH . I 8 HOH A 108 1308 67 HOH HOH . I 8 HOH A 109 1309 137 HOH HOH . I 8 HOH A 110 1310 146 HOH HOH . I 8 HOH A 111 1311 53 HOH HOH . I 8 HOH A 112 1312 97 HOH HOH . I 8 HOH A 113 1313 5 HOH HOH . I 8 HOH A 114 1314 61 HOH HOH . I 8 HOH A 115 1315 118 HOH HOH . I 8 HOH A 116 1316 134 HOH HOH . I 8 HOH A 117 1317 142 HOH HOH . I 8 HOH A 118 1318 109 HOH HOH . I 8 HOH A 119 1319 59 HOH HOH . I 8 HOH A 120 1320 50 HOH HOH . I 8 HOH A 121 1321 19 HOH HOH . I 8 HOH A 122 1322 119 HOH HOH . I 8 HOH A 123 1323 143 HOH HOH . I 8 HOH A 124 1324 176 HOH HOH . I 8 HOH A 125 1325 98 HOH HOH . I 8 HOH A 126 1326 150 HOH HOH . I 8 HOH A 127 1327 151 HOH HOH . I 8 HOH A 128 1328 60 HOH HOH . I 8 HOH A 129 1329 163 HOH HOH . I 8 HOH A 130 1330 175 HOH HOH . I 8 HOH A 131 1331 63 HOH HOH . I 8 HOH A 132 1332 155 HOH HOH . I 8 HOH A 133 1333 104 HOH HOH . I 8 HOH A 134 1334 84 HOH HOH . I 8 HOH A 135 1335 161 HOH HOH . I 8 HOH A 136 1336 148 HOH HOH . I 8 HOH A 137 1337 179 HOH HOH . I 8 HOH A 138 1338 178 HOH HOH . I 8 HOH A 139 1339 99 HOH HOH . I 8 HOH A 140 1340 58 HOH HOH . I 8 HOH A 141 1341 156 HOH HOH . I 8 HOH A 142 1342 170 HOH HOH . I 8 HOH A 143 1343 121 HOH HOH . I 8 HOH A 144 1344 168 HOH HOH . I 8 HOH A 145 1345 167 HOH HOH . I 8 HOH A 146 1346 159 HOH HOH . I 8 HOH A 147 1347 81 HOH HOH . I 8 HOH A 148 1348 182 HOH HOH . I 8 HOH A 149 1349 69 HOH HOH . I 8 HOH A 150 1350 169 HOH HOH . I 8 HOH A 151 1351 172 HOH HOH . I 8 HOH A 152 1352 181 HOH HOH . I 8 HOH A 153 1353 77 HOH HOH . J 8 HOH B 1 501 87 HOH HOH . J 8 HOH B 2 502 180 HOH HOH . J 8 HOH B 3 503 44 HOH HOH . J 8 HOH B 4 504 55 HOH HOH . J 8 HOH B 5 505 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 0.78 17.782 7.66 1 54.45 ? C1 MPD 1102 A 1 HETATM 2 C C2 MPD . . . D 4 1.594 16.496 7.747 1 51.16 ? C2 MPD 1102 A 1 HETATM 3 O O2 MPD . . . D 4 2.92 16.83 7.277 1 54.16 ? O2 MPD 1102 A 1 HETATM 4 C CM MPD . . . D 4 1.765 16.05 9.185 1 54.13 ? CM MPD 1102 A 1 HETATM 5 C C3 MPD . . . D 4 1.057 15.321 6.925 1 52.28 ? C3 MPD 1102 A 1 HETATM 6 C C4 MPD . . . D 4 -0.456 15.092 6.819 1 52.44 ? C4 MPD 1102 A 1 HETATM 7 O O4 MPD . . . D 4 -0.607 14.204 5.75 1 54.39 ? O4 MPD 1102 A 1 HETATM 8 C C5 MPD . . . D 4 -1.151 14.471 8.028 1 52.37 ? C5 MPD 1102 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #