data_5L7I # _model_server_result.job_id Bu3aZvxQJb7TvrlvojIwmw _model_server_result.datetime_utc '2024-11-30 07:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 5L7I # _exptl.entry_id 5L7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.297 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloranyl-~{N}-(4-chloranyl-3-pyridin-2-yl-phenyl)-4-methylsulfonyl-benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.53 _cell.angle_beta 98.2 _cell.angle_gamma 105.92 _cell.entry_id 5L7I _cell.length_a 52.82 _cell.length_b 71.29 _cell.length_c 107.02 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 64 1_555 A SG CYS 147 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 39 A CYS 70 1_555 A SG CYS 103 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 47 A CYS 78 1_555 A SG CYS 96 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 87 A CYS 118 1_555 A SG CYS 123 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 116 A CYS 147 1_555 A SG CYS 138 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 162 A CYS 193 1_555 A SG CYS 182 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 186 A CYS 217 1_555 A SG CYS 264 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 283 A CYS 314 1_555 A SG CYS 359 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 563 A CYS 490 1_555 A SG CYS 580 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 B SG CYS 33 B CYS 64 1_555 B SG CYS 147 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 39 B CYS 70 1_555 B SG CYS 103 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 47 B CYS 78 1_555 B SG CYS 96 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 B SG CYS 87 B CYS 118 1_555 B SG CYS 123 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 B SG CYS 116 B CYS 147 1_555 B SG CYS 138 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 B SG CYS 162 B CYS 193 1_555 B SG CYS 182 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 B SG CYS 186 B CYS 217 1_555 B SG CYS 264 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 B SG CYS 283 B CYS 314 1_555 B SG CYS 359 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf18 B SG CYS 563 B CYS 490 1_555 B SG CYS 580 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 566 A ASN 493 1_555 C C1 NAG . A NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 B O THR 59 B THR 90 1_555 E NA NA . B NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 B O ALA 62 B ALA 93 1_555 E NA NA . B NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 B O SER 65 B SER 96 1_555 E NA NA . B NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? # _chem_comp.formula 'C19 H14 Cl2 N2 O3 S' _chem_comp.formula_weight 421.297 _chem_comp.id VIS _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloranyl-~{N}-(4-chloranyl-3-pyridin-2-yl-phenyl)-4-methylsulfonyl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 VIS doub 468 n y C17 C18 VIS sing 469 n y C16 C15 VIS sing 470 n y C18 N1 VIS doub 471 n y C15 C14 VIS doub 472 n y N1 C14 VIS sing 473 n y C14 C12 VIS sing 474 n n CL1 C11 VIS sing 475 n n C12 C11 VIS doub 476 n y C12 C13 VIS sing 477 n y C11 C10 VIS sing 478 n y C13 C8 VIS doub 479 n y C10 C9 VIS doub 480 n y C8 C9 VIS sing 481 n y C8 N VIS sing 482 n n O2 C7 VIS doub 483 n n CL C5 VIS sing 484 n n N C7 VIS sing 485 n n C7 C4 VIS sing 486 n n C5 C4 VIS doub 487 n y C5 C6 VIS sing 488 n y C4 C3 VIS sing 489 n y C6 C1 VIS doub 490 n y C3 C2 VIS doub 491 n y C1 C2 VIS sing 492 n y C1 S VIS sing 493 n n O1 S VIS doub 494 n n S O VIS doub 495 n n S C VIS sing 496 n n C10 H1 VIS sing 497 n n C9 H2 VIS sing 498 n n C18 H3 VIS sing 499 n n C17 H4 VIS sing 500 n n C16 H5 VIS sing 501 n n C15 H6 VIS sing 502 n n C13 H7 VIS sing 503 n n N H8 VIS sing 504 n n C3 H9 VIS sing 505 n n C2 H10 VIS sing 506 n n C6 H11 VIS sing 507 n n C H12 VIS sing 508 n n C H13 VIS sing 509 n n C H14 VIS sing 510 n n # _atom_sites.entry_id 5L7I _atom_sites.fract_transf_matrix[1][1] 0.018932 _atom_sites.fract_transf_matrix[1][2] 0.0054 _atom_sites.fract_transf_matrix[1][3] 0.003109 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014587 _atom_sites.fract_transf_matrix[2][3] 0.001011 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1201 1 NAG NAG . D 3 VIS A 1 1202 3 VIS VIS . E 4 NA B 1 1201 1 NA NA . F 3 VIS B 1 1202 4 VIS VIS . G 5 MPG B 1 1203 1 MPG MPG . H 5 MPG B 1 1204 2 MPG MPG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 VIS . . . D 3 0.427 56.081 -42.31 1 109.8 ? CL1 VIS 1202 A 1 HETATM 2 C C11 VIS . . . D 3 1.751 55.965 -41.197 1 110.79 ? C11 VIS 1202 A 1 HETATM 3 C C10 VIS . . . D 3 1.489 56.131 -39.845 1 110.77 ? C10 VIS 1202 A 1 HETATM 4 C C9 VIS . . . D 3 2.52 56.047 -38.925 1 111.26 ? C9 VIS 1202 A 1 HETATM 5 C C12 VIS . . . D 3 3.053 55.703 -41.653 1 111.98 ? C12 VIS 1202 A 1 HETATM 6 C C14 VIS . . . D 3 3.36 55.504 -43.094 1 112.67 ? C14 VIS 1202 A 1 HETATM 7 N N1 VIS . . . D 3 3.719 54.257 -43.459 1 113.13 ? N1 VIS 1202 A 1 HETATM 8 C C18 VIS . . . D 3 4.06 54.055 -44.743 1 113.18 ? C18 VIS 1202 A 1 HETATM 9 C C17 VIS . . . D 3 4.053 55.05 -45.703 1 113.2 ? C17 VIS 1202 A 1 HETATM 10 C C16 VIS . . . D 3 3.678 56.318 -45.317 1 113.15 ? C16 VIS 1202 A 1 HETATM 11 C C15 VIS . . . D 3 3.326 56.56 -44.001 1 112.72 ? C15 VIS 1202 A 1 HETATM 12 C C13 VIS . . . D 3 4.078 55.623 -40.709 1 112.19 ? C13 VIS 1202 A 1 HETATM 13 C C8 VIS . . . D 3 3.822 55.801 -39.353 1 112.06 ? C8 VIS 1202 A 1 HETATM 14 N N VIS . . . D 3 4.896 55.809 -38.434 1 112.92 ? N VIS 1202 A 1 HETATM 15 C C7 VIS . . . D 3 5.839 56.772 -38.303 1 114.65 ? C7 VIS 1202 A 1 HETATM 16 O O2 VIS . . . D 3 5.918 57.741 -39.053 1 114.44 ? O2 VIS 1202 A 1 HETATM 17 C C4 VIS . . . D 3 6.769 56.621 -37.138 1 117.01 ? C4 VIS 1202 A 1 HETATM 18 C C3 VIS . . . D 3 6.249 56.171 -35.921 1 117.97 ? C3 VIS 1202 A 1 HETATM 19 C C2 VIS . . . D 3 7.037 56.102 -34.786 1 118.81 ? C2 VIS 1202 A 1 HETATM 20 C C5 VIS . . . D 3 8.118 56.977 -37.181 1 118.49 ? C5 VIS 1202 A 1 HETATM 21 CL CL VIS . . . D 3 8.859 57.513 -38.655 1 119.3 ? CL VIS 1202 A 1 HETATM 22 C C6 VIS . . . D 3 8.92 56.916 -36.057 1 119.15 ? C6 VIS 1202 A 1 HETATM 23 C C1 VIS . . . D 3 8.367 56.489 -34.86 1 119.5 ? C1 VIS 1202 A 1 HETATM 24 S S VIS . . . D 3 9.364 56.487 -33.401 1 120.22 ? S VIS 1202 A 1 HETATM 25 O O VIS . . . D 3 9.154 55.245 -32.715 1 120.73 ? O VIS 1202 A 1 HETATM 26 O O1 VIS . . . D 3 10.705 56.834 -33.774 1 120.36 ? O1 VIS 1202 A 1 HETATM 27 C C VIS . . . D 3 8.708 57.782 -32.422 1 120.14 ? C VIS 1202 A 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #