data_5L7I # _model_server_result.job_id G_jSE3U0mEj7BTSz8tXmAw _model_server_result.datetime_utc '2025-02-18 16:52:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1204}' # _entry.id 5L7I # _exptl.entry_id 5L7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.53 _cell.angle_beta 98.2 _cell.angle_gamma 105.92 _cell.entry_id 5L7I _cell.length_a 52.82 _cell.length_b 71.29 _cell.length_c 107.02 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 64 1_555 A SG CYS 147 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 39 A CYS 70 1_555 A SG CYS 103 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 47 A CYS 78 1_555 A SG CYS 96 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 87 A CYS 118 1_555 A SG CYS 123 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 116 A CYS 147 1_555 A SG CYS 138 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 162 A CYS 193 1_555 A SG CYS 182 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 186 A CYS 217 1_555 A SG CYS 264 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 283 A CYS 314 1_555 A SG CYS 359 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 563 A CYS 490 1_555 A SG CYS 580 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 B SG CYS 33 B CYS 64 1_555 B SG CYS 147 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 39 B CYS 70 1_555 B SG CYS 103 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 47 B CYS 78 1_555 B SG CYS 96 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 B SG CYS 87 B CYS 118 1_555 B SG CYS 123 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 B SG CYS 116 B CYS 147 1_555 B SG CYS 138 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 B SG CYS 162 B CYS 193 1_555 B SG CYS 182 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 B SG CYS 186 B CYS 217 1_555 B SG CYS 264 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 B SG CYS 283 B CYS 314 1_555 B SG CYS 359 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf18 B SG CYS 563 B CYS 490 1_555 B SG CYS 580 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 566 A ASN 493 1_555 C C1 NAG . A NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 B O THR 59 B THR 90 1_555 E NA NA . B NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 B O ALA 62 B ALA 93 1_555 E NA NA . B NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 B O SER 65 B SER 96 1_555 E NA NA . B NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 235 n n C2 C1 MPG sing 236 n n C3 C4 MPG sing 237 n n C4 C5 MPG sing 238 n n C5 C6 MPG sing 239 n n C6 C7 MPG sing 240 n n C7 C8 MPG sing 241 n n C8 C9 MPG sing 242 n n C9 C10 MPG doub 243 z n C10 C11 MPG sing 244 n n C11 C12 MPG sing 245 n n C12 C13 MPG sing 246 n n C13 C14 MPG sing 247 n n C14 C15 MPG sing 248 n n C15 C16 MPG sing 249 n n C16 C17 MPG sing 250 n n C17 C18 MPG sing 251 n n O1 C1 MPG sing 252 n n O1 CX3 MPG sing 253 n n CXD O2 MPG sing 254 n n CXD C21 MPG sing 255 n n CXD CX3 MPG sing 256 n n C21 O3 MPG sing 257 n n C2 H21C MPG sing 258 n n C2 H22C MPG sing 259 n n C3 H31C MPG sing 260 n n C3 H32C MPG sing 261 n n CX3 O4 MPG doub 262 n n C4 H41C MPG sing 263 n n C4 H42C MPG sing 264 n n C5 H51C MPG sing 265 n n C5 H52C MPG sing 266 n n C6 H61C MPG sing 267 n n C6 H62C MPG sing 268 n n C7 H71C MPG sing 269 n n C7 H72C MPG sing 270 n n C8 H81C MPG sing 271 n n C8 H82C MPG sing 272 n n C9 H9 MPG sing 273 n n C10 H10 MPG sing 274 n n C11 H111 MPG sing 275 n n C11 H112 MPG sing 276 n n C12 H121 MPG sing 277 n n C12 H122 MPG sing 278 n n C13 H131 MPG sing 279 n n C13 H132 MPG sing 280 n n C14 H141 MPG sing 281 n n C14 H142 MPG sing 282 n n C15 H151 MPG sing 283 n n C15 H152 MPG sing 284 n n C16 H161 MPG sing 285 n n C16 H162 MPG sing 286 n n C17 H171 MPG sing 287 n n C17 H172 MPG sing 288 n n C18 H181 MPG sing 289 n n C18 H182 MPG sing 290 n n C18 H183 MPG sing 291 n n C1 HX31 MPG sing 292 n n C1 HX32 MPG sing 293 n n CXD HXD MPG sing 294 n n O2 H2 MPG sing 295 n n C21 H211 MPG sing 296 n n C21 H212 MPG sing 297 n n O3 H3 MPG sing 298 n n # _atom_sites.entry_id 5L7I _atom_sites.fract_transf_matrix[1][1] 0.018932 _atom_sites.fract_transf_matrix[1][2] 0.0054 _atom_sites.fract_transf_matrix[1][3] 0.003109 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014587 _atom_sites.fract_transf_matrix[2][3] 0.001011 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1201 1 NAG NAG . D 3 VIS A 1 1202 3 VIS VIS . E 4 NA B 1 1201 1 NA NA . F 3 VIS B 1 1202 4 VIS VIS . G 5 MPG B 1 1203 1 MPG MPG . H 5 MPG B 1 1204 2 MPG MPG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . H 5 -6.233 31.995 -42.278 1 110.79 ? C2 MPG 1204 B 1 HETATM 2 C C3 MPG . . . H 5 -5.249 32.996 -42.876 1 106.96 ? C3 MPG 1204 B 1 HETATM 3 C C4 MPG . . . H 5 -5.014 32.722 -44.357 1 102.92 ? C4 MPG 1204 B 1 HETATM 4 C C5 MPG . . . H 5 -5.681 33.773 -45.235 1 99.07 ? C5 MPG 1204 B 1 HETATM 5 C C6 MPG . . . H 5 -4.925 33.939 -46.546 1 95.99 ? C6 MPG 1204 B 1 HETATM 6 C C7 MPG . . . H 5 -5.713 33.358 -47.712 1 93.53 ? C7 MPG 1204 B 1 HETATM 7 C C8 MPG . . . H 5 -4.981 33.562 -49.034 1 91.25 ? C8 MPG 1204 B 1 HETATM 8 C C9 MPG . . . H 5 -5.025 32.276 -49.835 1 89.12 ? C9 MPG 1204 B 1 HETATM 9 C C10 MPG . . . H 5 -5.059 32.204 -51.171 1 87.22 ? C10 MPG 1204 B 1 HETATM 10 C C11 MPG . . . H 5 -5.064 33.404 -52.094 1 86.06 ? C11 MPG 1204 B 1 HETATM 11 C C12 MPG . . . H 5 -4.069 33.176 -53.224 1 85.19 ? C12 MPG 1204 B 1 HETATM 12 C C13 MPG . . . H 5 -4.481 33.947 -54.472 1 84.12 ? C13 MPG 1204 B 1 HETATM 13 C C14 MPG . . . H 5 -3.32 34.044 -55.455 1 83.43 ? C14 MPG 1204 B 1 HETATM 14 C C15 MPG . . . H 5 -3.718 33.508 -56.826 1 83 ? C15 MPG 1204 B 1 HETATM 15 C C16 MPG . . . H 5 -2.916 34.182 -57.934 1 82.69 ? C16 MPG 1204 B 1 HETATM 16 C C17 MPG . . . H 5 -2.159 33.159 -58.774 1 82.23 ? C17 MPG 1204 B 1 HETATM 17 C C18 MPG . . . H 5 -1.376 33.828 -59.884 1 81.8 ? C18 MPG 1204 B 1 HETATM 18 O O1 MPG . . . H 5 -8.463 32.924 -42.368 1 117.43 ? O1 MPG 1204 B 1 HETATM 19 C C1 MPG . . . H 5 -7.339 32.712 -41.511 1 114.36 ? C1 MPG 1204 B 1 HETATM 20 C CXD MPG . . . H 5 -9.747 35.154 -42.512 1 120.98 ? CXD MPG 1204 B 1 HETATM 21 O O2 MPG . . . H 5 -10.815 35.863 -41.866 1 121.45 ? O2 MPG 1204 B 1 HETATM 22 C C21 MPG . . . H 5 -10.022 35.083 -44.01 1 121.37 ? C21 MPG 1204 B 1 HETATM 23 O O3 MPG . . . H 5 -9.261 36.099 -44.673 1 121.51 ? O3 MPG 1204 B 1 HETATM 24 O O4 MPG . . . H 5 -10.344 33.33 -41.094 1 120.16 ? O4 MPG 1204 B 1 HETATM 25 C CX3 MPG . . . H 5 -9.571 33.769 -41.935 1 119.76 ? CX3 MPG 1204 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #