data_5L7K # _model_server_result.job_id IrP-NYcDYLj92wF4NCwG3g _model_server_result.datetime_utc '2024-11-22 02:18:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 5L7K # _exptl.entry_id 5L7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L7K _cell.length_a 88.27 _cell.length_b 88.27 _cell.length_c 105.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F 1 1 C,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id MYR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MYR _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.472 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 237 n n C1 O2 MYR sing 238 n n C1 C2 MYR sing 239 n n O2 HO2 MYR sing 240 n n C2 C3 MYR sing 241 n n C2 H21 MYR sing 242 n n C2 H22 MYR sing 243 n n C3 C4 MYR sing 244 n n C3 H31 MYR sing 245 n n C3 H32 MYR sing 246 n n C4 C5 MYR sing 247 n n C4 H41 MYR sing 248 n n C4 H42 MYR sing 249 n n C5 C6 MYR sing 250 n n C5 H51 MYR sing 251 n n C5 H52 MYR sing 252 n n C6 C7 MYR sing 253 n n C6 H61 MYR sing 254 n n C6 H62 MYR sing 255 n n C7 C8 MYR sing 256 n n C7 H71 MYR sing 257 n n C7 H72 MYR sing 258 n n C8 C9 MYR sing 259 n n C8 H81 MYR sing 260 n n C8 H82 MYR sing 261 n n C9 C10 MYR sing 262 n n C9 H91 MYR sing 263 n n C9 H92 MYR sing 264 n n C10 C11 MYR sing 265 n n C10 H101 MYR sing 266 n n C10 H102 MYR sing 267 n n C11 C12 MYR sing 268 n n C11 H111 MYR sing 269 n n C11 H112 MYR sing 270 n n C12 C13 MYR sing 271 n n C12 H121 MYR sing 272 n n C12 H122 MYR sing 273 n n C13 C14 MYR sing 274 n n C13 H131 MYR sing 275 n n C13 H132 MYR sing 276 n n C14 H141 MYR sing 277 n n C14 H142 MYR sing 278 n n C14 H143 MYR sing 279 n n # _atom_sites.entry_id 5L7K _atom_sites.fract_transf_matrix[1][1] 0.011329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MYR B 1 101 1 MYR DRG . E 4 HOH A 1 301 45 HOH HOH . E 4 HOH A 2 302 3 HOH HOH . E 4 HOH A 3 303 22 HOH HOH . E 4 HOH A 4 304 25 HOH HOH . E 4 HOH A 5 305 36 HOH HOH . E 4 HOH A 6 306 37 HOH HOH . E 4 HOH A 7 307 27 HOH HOH . E 4 HOH A 8 308 32 HOH HOH . E 4 HOH A 9 309 7 HOH HOH . E 4 HOH A 10 310 42 HOH HOH . E 4 HOH A 11 311 26 HOH HOH . E 4 HOH A 12 312 4 HOH HOH . E 4 HOH A 13 313 18 HOH HOH . E 4 HOH A 14 314 24 HOH HOH . E 4 HOH A 15 315 34 HOH HOH . E 4 HOH A 16 316 40 HOH HOH . E 4 HOH A 17 317 31 HOH HOH . E 4 HOH A 18 318 15 HOH HOH . E 4 HOH A 19 319 38 HOH HOH . E 4 HOH A 20 320 8 HOH HOH . E 4 HOH A 21 321 41 HOH HOH . E 4 HOH A 22 322 5 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 6 HOH HOH . E 4 HOH A 25 325 16 HOH HOH . E 4 HOH A 26 326 13 HOH HOH . E 4 HOH A 27 327 48 HOH HOH . E 4 HOH A 28 328 35 HOH HOH . E 4 HOH A 29 329 28 HOH HOH . E 4 HOH A 30 330 39 HOH HOH . E 4 HOH A 31 331 47 HOH HOH . E 4 HOH A 32 332 11 HOH HOH . E 4 HOH A 33 333 29 HOH HOH . E 4 HOH A 34 334 19 HOH HOH . E 4 HOH A 35 335 17 HOH HOH . E 4 HOH A 36 336 9 HOH HOH . E 4 HOH A 37 337 30 HOH HOH . E 4 HOH A 38 338 10 HOH HOH . E 4 HOH A 39 339 12 HOH HOH . E 4 HOH A 40 340 14 HOH HOH . E 4 HOH A 41 341 33 HOH HOH . E 4 HOH A 42 342 44 HOH HOH . F 4 HOH B 1 201 2 HOH HOH . F 4 HOH B 2 202 1 HOH HOH . G 4 HOH G 1 301 50 HOH HOH . G 4 HOH G 2 302 46 HOH HOH . G 4 HOH G 3 303 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . D 3 0.51 -34.279 -25.864 1 32.54 ? C1 MYR 101 B 1 HETATM 2 O O1 MYR . . . D 3 1.213 -35.252 -25.676 1 30.55 ? O1 MYR 101 B 1 HETATM 3 C C2 MYR . . . D 3 0.448 -33.037 -24.981 1 33.01 ? C2 MYR 101 B 1 HETATM 4 C C3 MYR . . . D 3 -1.07 -33.033 -24.696 1 34.32 ? C3 MYR 101 B 1 HETATM 5 C C4 MYR . . . D 3 -1.44 -31.949 -23.709 1 35.06 ? C4 MYR 101 B 1 HETATM 6 C C5 MYR . . . D 3 -2.922 -31.747 -23.778 1 38.09 ? C5 MYR 101 B 1 HETATM 7 C C6 MYR . . . D 3 -3.351 -30.673 -22.753 1 44.52 ? C6 MYR 101 B 1 HETATM 8 C C7 MYR . . . D 3 -2.842 -29.322 -23.197 1 45.78 ? C7 MYR 101 B 1 HETATM 9 C C8 MYR . . . D 3 -3.855 -28.242 -22.955 1 51.59 ? C8 MYR 101 B 1 HETATM 10 C C9 MYR . . . D 3 -4.677 -28.117 -24.232 1 56.37 ? C9 MYR 101 B 1 HETATM 11 C C10 MYR . . . D 3 -4.151 -27.026 -25.147 1 54.99 ? C10 MYR 101 B 1 HETATM 12 C C11 MYR . . . D 3 -5.165 -25.872 -25.237 1 61.74 ? C11 MYR 101 B 1 HETATM 13 C C12 MYR . . . D 3 -5.767 -25.746 -26.649 1 61.92 ? C12 MYR 101 B 1 HETATM 14 C C13 MYR . . . D 3 -6.894 -26.742 -26.816 1 64.08 ? C13 MYR 101 B 1 HETATM 15 C C14 MYR . . . D 3 -8.176 -26.028 -26.43 1 59.15 ? C14 MYR 101 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #