data_5L7N # _model_server_result.job_id 0iSHQN6rF2-k5sTpqGV3hw _model_server_result.datetime_utc '2025-03-06 08:17:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1302}' # _entry.id 5L7N # _exptl.entry_id 5L7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L7N _cell.length_a 75.88 _cell.length_b 82.51 _cell.length_c 125.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 905 1_555 A SG CYS 63 A CYS 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 142 A CYS 999 1_555 A SG CYS 154 A CYS 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 235 A CYS 1092 1_555 A SG CYS 245 A CYS 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 338 A CYS 1195 1_555 A SG CYS 349 A CYS 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 184 A ASN 1041 1_555 D C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 239 A ASN 1096 1_555 B C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 328 A ASN 1185 1_555 C C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5L7N _atom_sites.fract_transf_matrix[1][1] 0.013179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1301 1228 NAG NAG . C 2 NAG A 1 1302 1229 NAG NAG . D 2 NAG A 1 1303 1230 NAG NAG . E 3 EDO A 1 1304 136 EDO EDO . F 4 PEG A 1 1305 137 PEG PEG . G 5 HOH A 1 1401 82 HOH HOH . G 5 HOH A 2 1402 1 HOH HOH . G 5 HOH A 3 1403 93 HOH HOH . G 5 HOH A 4 1404 25 HOH HOH . G 5 HOH A 5 1405 61 HOH HOH . G 5 HOH A 6 1406 108 HOH HOH . G 5 HOH A 7 1407 29 HOH HOH . G 5 HOH A 8 1408 5 HOH HOH . G 5 HOH A 9 1409 117 HOH HOH . G 5 HOH A 10 1410 4 HOH HOH . G 5 HOH A 11 1411 3 HOH HOH . G 5 HOH A 12 1412 11 HOH HOH . G 5 HOH A 13 1413 87 HOH HOH . G 5 HOH A 14 1414 36 HOH HOH . G 5 HOH A 15 1415 38 HOH HOH . G 5 HOH A 16 1416 126 HOH HOH . G 5 HOH A 17 1417 104 HOH HOH . G 5 HOH A 18 1418 98 HOH HOH . G 5 HOH A 19 1419 30 HOH HOH . G 5 HOH A 20 1420 49 HOH HOH . G 5 HOH A 21 1421 18 HOH HOH . G 5 HOH A 22 1422 44 HOH HOH . G 5 HOH A 23 1423 39 HOH HOH . G 5 HOH A 24 1424 27 HOH HOH . G 5 HOH A 25 1425 45 HOH HOH . G 5 HOH A 26 1426 10 HOH HOH . G 5 HOH A 27 1427 12 HOH HOH . G 5 HOH A 28 1428 13 HOH HOH . G 5 HOH A 29 1429 15 HOH HOH . G 5 HOH A 30 1430 32 HOH HOH . G 5 HOH A 31 1431 43 HOH HOH . G 5 HOH A 32 1432 91 HOH HOH . G 5 HOH A 33 1433 90 HOH HOH . G 5 HOH A 34 1434 52 HOH HOH . G 5 HOH A 35 1435 28 HOH HOH . G 5 HOH A 36 1436 65 HOH HOH . G 5 HOH A 37 1437 102 HOH HOH . G 5 HOH A 38 1438 2 HOH HOH . G 5 HOH A 39 1439 94 HOH HOH . G 5 HOH A 40 1440 129 HOH HOH . G 5 HOH A 41 1441 68 HOH HOH . G 5 HOH A 42 1442 47 HOH HOH . G 5 HOH A 43 1443 57 HOH HOH . G 5 HOH A 44 1444 99 HOH HOH . G 5 HOH A 45 1445 6 HOH HOH . G 5 HOH A 46 1446 75 HOH HOH . G 5 HOH A 47 1447 54 HOH HOH . G 5 HOH A 48 1448 79 HOH HOH . G 5 HOH A 49 1449 17 HOH HOH . G 5 HOH A 50 1450 73 HOH HOH . G 5 HOH A 51 1451 59 HOH HOH . G 5 HOH A 52 1452 63 HOH HOH . G 5 HOH A 53 1453 14 HOH HOH . G 5 HOH A 54 1454 51 HOH HOH . G 5 HOH A 55 1455 46 HOH HOH . G 5 HOH A 56 1456 97 HOH HOH . G 5 HOH A 57 1457 70 HOH HOH . G 5 HOH A 58 1458 24 HOH HOH . G 5 HOH A 59 1459 103 HOH HOH . G 5 HOH A 60 1460 8 HOH HOH . G 5 HOH A 61 1461 9 HOH HOH . G 5 HOH A 62 1462 95 HOH HOH . G 5 HOH A 63 1463 55 HOH HOH . G 5 HOH A 64 1464 67 HOH HOH . G 5 HOH A 65 1465 58 HOH HOH . G 5 HOH A 66 1466 69 HOH HOH . G 5 HOH A 67 1467 85 HOH HOH . G 5 HOH A 68 1468 22 HOH HOH . G 5 HOH A 69 1469 105 HOH HOH . G 5 HOH A 70 1470 53 HOH HOH . G 5 HOH A 71 1471 31 HOH HOH . G 5 HOH A 72 1472 107 HOH HOH . G 5 HOH A 73 1473 89 HOH HOH . G 5 HOH A 74 1474 83 HOH HOH . G 5 HOH A 75 1475 77 HOH HOH . G 5 HOH A 76 1476 48 HOH HOH . G 5 HOH A 77 1477 81 HOH HOH . G 5 HOH A 78 1478 72 HOH HOH . G 5 HOH A 79 1479 26 HOH HOH . G 5 HOH A 80 1480 37 HOH HOH . G 5 HOH A 81 1481 115 HOH HOH . G 5 HOH A 82 1482 42 HOH HOH . G 5 HOH A 83 1483 21 HOH HOH . G 5 HOH A 84 1484 80 HOH HOH . G 5 HOH A 85 1485 33 HOH HOH . G 5 HOH A 86 1486 60 HOH HOH . G 5 HOH A 87 1487 116 HOH HOH . G 5 HOH A 88 1488 19 HOH HOH . G 5 HOH A 89 1489 132 HOH HOH . G 5 HOH A 90 1490 118 HOH HOH . G 5 HOH A 91 1491 100 HOH HOH . G 5 HOH A 92 1492 130 HOH HOH . G 5 HOH A 93 1493 20 HOH HOH . G 5 HOH A 94 1494 35 HOH HOH . G 5 HOH A 95 1495 16 HOH HOH . G 5 HOH A 96 1496 76 HOH HOH . G 5 HOH A 97 1497 74 HOH HOH . G 5 HOH A 98 1498 7 HOH HOH . G 5 HOH A 99 1499 66 HOH HOH . G 5 HOH A 100 1500 111 HOH HOH . G 5 HOH A 101 1501 23 HOH HOH . G 5 HOH A 102 1502 40 HOH HOH . G 5 HOH A 103 1503 92 HOH HOH . G 5 HOH A 104 1504 64 HOH HOH . G 5 HOH A 105 1505 50 HOH HOH . G 5 HOH A 106 1506 86 HOH HOH . G 5 HOH A 107 1507 34 HOH HOH . G 5 HOH A 108 1508 120 HOH HOH . G 5 HOH A 109 1509 88 HOH HOH . G 5 HOH A 110 1510 134 HOH HOH . G 5 HOH A 111 1511 84 HOH HOH . G 5 HOH A 112 1512 106 HOH HOH . G 5 HOH A 113 1513 112 HOH HOH . G 5 HOH A 114 1514 110 HOH HOH . G 5 HOH A 115 1515 131 HOH HOH . G 5 HOH A 116 1516 101 HOH HOH . G 5 HOH A 117 1517 121 HOH HOH . G 5 HOH A 118 1518 71 HOH HOH . G 5 HOH A 119 1519 128 HOH HOH . G 5 HOH A 120 1520 62 HOH HOH . G 5 HOH A 121 1521 78 HOH HOH . G 5 HOH A 122 1522 135 HOH HOH . G 5 HOH A 123 1523 96 HOH HOH . G 5 HOH A 124 1524 133 HOH HOH . G 5 HOH A 125 1525 56 HOH HOH . G 5 HOH A 126 1526 119 HOH HOH . G 5 HOH A 127 1527 125 HOH HOH . G 5 HOH A 128 1528 127 HOH HOH . G 5 HOH A 129 1529 123 HOH HOH . G 5 HOH A 130 1530 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 46.663 33.708 -37.767 1 62.79 ? C1 NAG 1302 A 1 HETATM 2 C C2 NAG . . . C 2 45.472 33.812 -36.808 1 67.54 ? C2 NAG 1302 A 1 HETATM 3 C C3 NAG . . . C 2 45.909 34.423 -35.479 1 67.72 ? C3 NAG 1302 A 1 HETATM 4 C C4 NAG . . . C 2 47.095 33.661 -34.904 1 67.35 ? C4 NAG 1302 A 1 HETATM 5 C C5 NAG . . . C 2 48.217 33.586 -35.935 1 66.37 ? C5 NAG 1302 A 1 HETATM 6 C C6 NAG . . . C 2 49.388 32.751 -35.474 1 65.39 ? C6 NAG 1302 A 1 HETATM 7 C C7 NAG . . . C 2 43.306 34.039 -37.944 1 73.18 ? C7 NAG 1302 A 1 HETATM 8 C C8 NAG . . . C 2 42.296 34.995 -38.503 1 73.08 ? C8 NAG 1302 A 1 HETATM 9 N N2 NAG . . . C 2 44.395 34.591 -37.398 1 71.01 ? N2 NAG 1302 A 1 HETATM 10 O O3 NAG . . . C 2 44.822 34.392 -34.562 1 67.62 ? O3 NAG 1302 A 1 HETATM 11 O O4 NAG . . . C 2 47.573 34.314 -33.734 1 67.94 ? O4 NAG 1302 A 1 HETATM 12 O O5 NAG . . . C 2 47.726 32.98 -37.139 1 65.57 ? O5 NAG 1302 A 1 HETATM 13 O O6 NAG . . . C 2 48.957 31.511 -34.93 1 64.39 ? O6 NAG 1302 A 1 HETATM 14 O O7 NAG . . . C 2 43.144 32.824 -37.985 1 74.17 ? O7 NAG 1302 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #