data_5L7V # _model_server_result.job_id UGTz0BZQmcd7cvK2QoXidA _model_server_result.datetime_utc '2024-11-27 17:22:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5L7V # _exptl.entry_id 5L7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.258 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L7V _cell.length_a 55.504 _cell.length_b 148.386 _cell.length_c 147.659 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 117 A CYS 117 1_555 A SG CYS 430 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf2 B SG CYS 117 B CYS 117 1_555 B SG CYS 430 B CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C8 H13 N O4 S' _chem_comp.formula_weight 219.258 _chem_comp.id GNL _chem_comp.mon_nstd_flag . _chem_comp.name (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 GNL sing 129 n n C1 C2 GNL sing 130 n n C1 O5 GNL sing 131 n n S1 C7 GNL sing 132 n n C2 N2 GNL sing 133 n n C2 C3 GNL sing 134 n n N2 C7 GNL doub 135 n n C3 O3 GNL sing 136 n n C3 C4 GNL sing 137 n n C4 O4 GNL sing 138 n n C4 C5 GNL sing 139 n n C5 O5 GNL sing 140 n n C5 C6 GNL sing 141 n n C6 O6 GNL sing 142 n n C7 C8 GNL sing 143 n n C1 H1 GNL sing 144 n n C2 H2 GNL sing 145 n n C3 H3 GNL sing 146 n n O3 HO3 GNL sing 147 n n C4 H4 GNL sing 148 n n O4 HO4 GNL sing 149 n n C5 H5 GNL sing 150 n n C6 H6 GNL sing 151 n n C6 H6A GNL sing 152 n n O6 HO6 GNL sing 153 n n C8 H8 GNL sing 154 n n C8 H8A GNL sing 155 n n C8 H8B GNL sing 156 n n # _atom_sites.entry_id 5L7V _atom_sites.fract_transf_matrix[1][1] 0.018017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNL A 1 601 1 GNL Gtz . D 2 GNL B 1 601 2 GNL Gtz . E 3 HOH A 1 701 19 HOH HOH . E 3 HOH A 2 702 10 HOH HOH . E 3 HOH A 3 703 22 HOH HOH . E 3 HOH A 4 704 8 HOH HOH . E 3 HOH A 5 705 15 HOH HOH . E 3 HOH A 6 706 12 HOH HOH . E 3 HOH A 7 707 11 HOH HOH . E 3 HOH A 8 708 5 HOH HOH . E 3 HOH A 9 709 6 HOH HOH . E 3 HOH A 10 710 16 HOH HOH . E 3 HOH A 11 711 14 HOH HOH . E 3 HOH A 12 712 7 HOH HOH . E 3 HOH A 13 713 1 HOH HOH . F 3 HOH B 1 701 18 HOH HOH . F 3 HOH B 2 702 3 HOH HOH . F 3 HOH B 3 703 9 HOH HOH . F 3 HOH B 4 704 24 HOH HOH . F 3 HOH B 5 705 20 HOH HOH . F 3 HOH B 6 706 21 HOH HOH . F 3 HOH B 7 707 17 HOH HOH . F 3 HOH B 8 708 4 HOH HOH . F 3 HOH B 9 709 23 HOH HOH . F 3 HOH B 10 710 26 HOH HOH . F 3 HOH B 11 711 27 HOH HOH . F 3 HOH B 12 712 25 HOH HOH . F 3 HOH B 13 713 13 HOH HOH . F 3 HOH B 14 714 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GNL . . . C 2 12.42 44.496 35.335 1 57.13 ? C1 GNL 601 A 1 HETATM 2 S S1 GNL . . . C 2 12.155 44.258 33.616 1 64.16 ? S1 GNL 601 A 1 HETATM 3 C C2 GNL . . . C 2 11.978 43.148 35.907 1 58.46 ? C2 GNL 601 A 1 HETATM 4 N N2 GNL . . . C 2 12.281 42.18 34.839 1 55.95 ? N2 GNL 601 A 1 HETATM 5 C C3 GNL . . . C 2 10.469 43.079 36.185 1 57.08 ? C3 GNL 601 A 1 HETATM 6 O O3 GNL . . . C 2 10.157 42.022 37.101 1 54.41 ? O3 GNL 601 A 1 HETATM 7 C C4 GNL . . . C 2 9.937 44.355 36.822 1 58.53 ? C4 GNL 601 A 1 HETATM 8 O O4 GNL . . . C 2 10.443 44.445 38.146 1 53.84 ? O4 GNL 601 A 1 HETATM 9 C C5 GNL . . . C 2 10.331 45.566 35.994 1 60.32 ? C5 GNL 601 A 1 HETATM 10 O O5 GNL . . . C 2 11.754 45.623 35.908 1 56.71 ? O5 GNL 601 A 1 HETATM 11 C C6 GNL . . . C 2 9.806 46.887 36.565 1 60.73 ? C6 GNL 601 A 1 HETATM 12 O O6 GNL . . . C 2 9.964 47.902 35.549 1 64.17 ? O6 GNL 601 A 1 HETATM 13 C C7 GNL . . . C 2 12.453 42.639 33.689 1 60.4 ? C7 GNL 601 A 1 HETATM 14 C C8 GNL . . . C 2 12.92 41.802 32.536 1 59.06 ? C8 GNL 601 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #