data_5L7V
#
_model_server_result.job_id            5_hlDulDW05d1M-7oH2SQA 
_model_server_result.datetime_utc      '2024-11-23 23:49:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l7v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5L7V 
#
_exptl.entry_id    5L7V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              219.258 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L7V 
_cell.length_a            55.504 
_cell.length_b            148.386 
_cell.length_c            147.659 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L7V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 117 A CYS 117 1_555 A SG CYS 430 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
disulf ? disulf2 B SG CYS 117 B CYS 117 1_555 B SG CYS 430 B CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'C8 H13 N O4 S' 
_chem_comp.formula_weight    219.258 
_chem_comp.id                GNL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 GNL sing 129 n n 
C1 C2 GNL sing 130 n n 
C1 O5 GNL sing 131 n n 
S1 C7 GNL sing 132 n n 
C2 N2 GNL sing 133 n n 
C2 C3 GNL sing 134 n n 
N2 C7 GNL doub 135 n n 
C3 O3 GNL sing 136 n n 
C3 C4 GNL sing 137 n n 
C4 O4 GNL sing 138 n n 
C4 C5 GNL sing 139 n n 
C5 O5 GNL sing 140 n n 
C5 C6 GNL sing 141 n n 
C6 O6 GNL sing 142 n n 
C7 C8 GNL sing 143 n n 
C1 H1 GNL sing 144 n n 
C2 H2 GNL sing 145 n n 
C3 H3 GNL sing 146 n n 
O3 HO3 GNL sing 147 n n 
C4 H4 GNL sing 148 n n 
O4 HO4 GNL sing 149 n n 
C5 H5 GNL sing 150 n n 
C6 H6 GNL sing 151 n n 
C6 H6A GNL sing 152 n n 
O6 HO6 GNL sing 153 n n 
C8 H8 GNL sing 154 n n 
C8 H8A GNL sing 155 n n 
C8 H8B GNL sing 156 n n 
#
_atom_sites.entry_id                     5L7V 
_atom_sites.fract_transf_matrix[1][1]    0.018017 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006772 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNL A 1 601 1 GNL Gtz . 
D 2 GNL B 1 601 2 GNL Gtz . 
E 3 HOH A 1 701 19 HOH HOH . 
E 3 HOH A 2 702 10 HOH HOH . 
E 3 HOH A 3 703 22 HOH HOH . 
E 3 HOH A 4 704 8 HOH HOH . 
E 3 HOH A 5 705 15 HOH HOH . 
E 3 HOH A 6 706 12 HOH HOH . 
E 3 HOH A 7 707 11 HOH HOH . 
E 3 HOH A 8 708 5 HOH HOH . 
E 3 HOH A 9 709 6 HOH HOH . 
E 3 HOH A 10 710 16 HOH HOH . 
E 3 HOH A 11 711 14 HOH HOH . 
E 3 HOH A 12 712 7 HOH HOH . 
E 3 HOH A 13 713 1 HOH HOH . 
F 3 HOH B 1 701 18 HOH HOH . 
F 3 HOH B 2 702 3 HOH HOH . 
F 3 HOH B 3 703 9 HOH HOH . 
F 3 HOH B 4 704 24 HOH HOH . 
F 3 HOH B 5 705 20 HOH HOH . 
F 3 HOH B 6 706 21 HOH HOH . 
F 3 HOH B 7 707 17 HOH HOH . 
F 3 HOH B 8 708 4 HOH HOH . 
F 3 HOH B 9 709 23 HOH HOH . 
F 3 HOH B 10 710 26 HOH HOH . 
F 3 HOH B 11 711 27 HOH HOH . 
F 3 HOH B 12 712 25 HOH HOH . 
F 3 HOH B 13 713 13 HOH HOH . 
F 3 HOH B 14 714 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GNL . . . D 2 6.507 55.922 72.831 1 64.26 ? C1 GNL 601 B 1 
HETATM 2 S S1 GNL . . . D 2 6.826 57.617 72.408 1 62.24 ? S1 GNL 601 B 1 
HETATM 3 C C2 GNL . . . D 2 6.988 55.83 74.287 1 61.99 ? C2 GNL 601 B 1 
HETATM 4 N N2 GNL . . . D 2 6.699 57.154 74.826 1 59.34 ? N2 GNL 601 B 1 
HETATM 5 C C3 GNL . . . D 2 8.507 55.633 74.389 1 62.48 ? C3 GNL 601 B 1 
HETATM 6 O O3 GNL . . . D 2 8.853 55.241 75.723 1 60.76 ? O3 GNL 601 B 1 
HETATM 7 C C4 GNL . . . D 2 8.98 54.563 73.398 1 62.48 ? C4 GNL 601 B 1 
HETATM 8 O O4 GNL . . . D 2 8.425 53.292 73.736 1 61.74 ? O4 GNL 601 B 1 
HETATM 9 C C5 GNL . . . D 2 8.54 54.904 71.987 1 64.6 ? C5 GNL 601 B 1 
HETATM 10 O O5 GNL . . . D 2 7.112 54.95 71.973 1 65.63 ? O5 GNL 601 B 1 
HETATM 11 C C6 GNL . . . D 2 8.989 53.91 70.922 1 66.16 ? C6 GNL 601 B 1 
HETATM 12 O O6 GNL . . . D 2 8.753 54.482 69.616 1 67.41 ? O6 GNL 601 B 1 
HETATM 13 C C7 GNL . . . D 2 6.595 58.089 73.983 1 65.78 ? C7 GNL 601 B 1 
HETATM 14 C C8 GNL . . . D 2 6.258 59.492 74.404 1 65.56 ? C8 GNL 601 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#