data_5L7W # _model_server_result.job_id h9o6QjsHxmTh_HAu0fjknQ _model_server_result.datetime_utc '2024-11-15 00:41:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5L7W # _exptl.entry_id 5L7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L7W _cell.length_a 91.019 _cell.length_b 91.019 _cell.length_c 132.197 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.019 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.019 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 C NA NA . A NA 302 1_555 F O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc6 C NA NA . A NA 302 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc7 C NA NA . A NA 302 1_555 F O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 108 n n C2 C1 BGC sing 109 n n C2 O2 BGC sing 110 n n C2 H2 BGC sing 111 n n C3 C4 BGC sing 112 n n C3 O3 BGC sing 113 n n C3 H3 BGC sing 114 n n C4 C5 BGC sing 115 n n C4 O4 BGC sing 116 n n C4 H4 BGC sing 117 n n C5 C6 BGC sing 118 n n C5 O5 BGC sing 119 n n C5 H5 BGC sing 120 n n C6 O6 BGC sing 121 n n C6 H61 BGC sing 122 n n C6 H62 BGC sing 123 n n C1 O1 BGC sing 124 n n C1 O5 BGC sing 125 n n C1 H1 BGC sing 126 n n O1 HO1 BGC sing 127 n n O2 HO2 BGC sing 128 n n O3 HO3 BGC sing 129 n n O4 HO4 BGC sing 130 n n O6 HO6 BGC sing 131 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5L7W _atom_sites.fract_transf_matrix[1][1] 0.010987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 NA A 1 302 1 NA NA . D 4 6QU A 1 303 1 6QU 121 . E 5 BGC A 1 304 1 BGC GLC . F 6 HOH A 1 401 150 HOH HOH . F 6 HOH A 2 402 94 HOH HOH . F 6 HOH A 3 403 203 HOH HOH . F 6 HOH A 4 404 234 HOH HOH . F 6 HOH A 5 405 56 HOH HOH . F 6 HOH A 6 406 36 HOH HOH . F 6 HOH A 7 407 76 HOH HOH . F 6 HOH A 8 408 209 HOH HOH . F 6 HOH A 9 409 225 HOH HOH . F 6 HOH A 10 410 47 HOH HOH . F 6 HOH A 11 411 168 HOH HOH . F 6 HOH A 12 412 175 HOH HOH . F 6 HOH A 13 413 72 HOH HOH . F 6 HOH A 14 414 13 HOH HOH . F 6 HOH A 15 415 88 HOH HOH . F 6 HOH A 16 416 60 HOH HOH . F 6 HOH A 17 417 200 HOH HOH . F 6 HOH A 18 418 64 HOH HOH . F 6 HOH A 19 419 84 HOH HOH . F 6 HOH A 20 420 91 HOH HOH . F 6 HOH A 21 421 58 HOH HOH . F 6 HOH A 22 422 19 HOH HOH . F 6 HOH A 23 423 173 HOH HOH . F 6 HOH A 24 424 7 HOH HOH . F 6 HOH A 25 425 18 HOH HOH . F 6 HOH A 26 426 4 HOH HOH . F 6 HOH A 27 427 207 HOH HOH . F 6 HOH A 28 428 41 HOH HOH . F 6 HOH A 29 429 89 HOH HOH . F 6 HOH A 30 430 99 HOH HOH . F 6 HOH A 31 431 113 HOH HOH . F 6 HOH A 32 432 34 HOH HOH . F 6 HOH A 33 433 77 HOH HOH . F 6 HOH A 34 434 3 HOH HOH . F 6 HOH A 35 435 217 HOH HOH . F 6 HOH A 36 436 101 HOH HOH . F 6 HOH A 37 437 182 HOH HOH . F 6 HOH A 38 438 40 HOH HOH . F 6 HOH A 39 439 16 HOH HOH . F 6 HOH A 40 440 15 HOH HOH . F 6 HOH A 41 441 123 HOH HOH . F 6 HOH A 42 442 171 HOH HOH . F 6 HOH A 43 443 35 HOH HOH . F 6 HOH A 44 444 57 HOH HOH . F 6 HOH A 45 445 65 HOH HOH . F 6 HOH A 46 446 214 HOH HOH . F 6 HOH A 47 447 22 HOH HOH . F 6 HOH A 48 448 145 HOH HOH . F 6 HOH A 49 449 46 HOH HOH . F 6 HOH A 50 450 62 HOH HOH . F 6 HOH A 51 451 185 HOH HOH . F 6 HOH A 52 452 129 HOH HOH . F 6 HOH A 53 453 48 HOH HOH . F 6 HOH A 54 454 32 HOH HOH . F 6 HOH A 55 455 79 HOH HOH . F 6 HOH A 56 456 67 HOH HOH . F 6 HOH A 57 457 193 HOH HOH . F 6 HOH A 58 458 110 HOH HOH . F 6 HOH A 59 459 5 HOH HOH . F 6 HOH A 60 460 187 HOH HOH . F 6 HOH A 61 461 166 HOH HOH . F 6 HOH A 62 462 37 HOH HOH . F 6 HOH A 63 463 93 HOH HOH . F 6 HOH A 64 464 215 HOH HOH . F 6 HOH A 65 465 202 HOH HOH . F 6 HOH A 66 466 86 HOH HOH . F 6 HOH A 67 467 50 HOH HOH . F 6 HOH A 68 468 180 HOH HOH . F 6 HOH A 69 469 151 HOH HOH . F 6 HOH A 70 470 53 HOH HOH . F 6 HOH A 71 471 141 HOH HOH . F 6 HOH A 72 472 103 HOH HOH . F 6 HOH A 73 473 134 HOH HOH . F 6 HOH A 74 474 126 HOH HOH . F 6 HOH A 75 475 212 HOH HOH . F 6 HOH A 76 476 78 HOH HOH . F 6 HOH A 77 477 42 HOH HOH . F 6 HOH A 78 478 11 HOH HOH . F 6 HOH A 79 479 29 HOH HOH . F 6 HOH A 80 480 153 HOH HOH . F 6 HOH A 81 481 114 HOH HOH . F 6 HOH A 82 482 8 HOH HOH . F 6 HOH A 83 483 10 HOH HOH . F 6 HOH A 84 484 190 HOH HOH . F 6 HOH A 85 485 52 HOH HOH . F 6 HOH A 86 486 17 HOH HOH . F 6 HOH A 87 487 152 HOH HOH . F 6 HOH A 88 488 31 HOH HOH . F 6 HOH A 89 489 139 HOH HOH . F 6 HOH A 90 490 45 HOH HOH . F 6 HOH A 91 491 43 HOH HOH . F 6 HOH A 92 492 118 HOH HOH . F 6 HOH A 93 493 111 HOH HOH . F 6 HOH A 94 494 157 HOH HOH . F 6 HOH A 95 495 227 HOH HOH . F 6 HOH A 96 496 55 HOH HOH . F 6 HOH A 97 497 121 HOH HOH . F 6 HOH A 98 498 25 HOH HOH . F 6 HOH A 99 499 26 HOH HOH . F 6 HOH A 100 500 108 HOH HOH . F 6 HOH A 101 501 186 HOH HOH . F 6 HOH A 102 502 221 HOH HOH . F 6 HOH A 103 503 104 HOH HOH . F 6 HOH A 104 504 191 HOH HOH . F 6 HOH A 105 505 112 HOH HOH . F 6 HOH A 106 506 63 HOH HOH . F 6 HOH A 107 507 146 HOH HOH . F 6 HOH A 108 508 1 HOH HOH . F 6 HOH A 109 509 117 HOH HOH . F 6 HOH A 110 510 21 HOH HOH . F 6 HOH A 111 511 66 HOH HOH . F 6 HOH A 112 512 9 HOH HOH . F 6 HOH A 113 513 218 HOH HOH . F 6 HOH A 114 514 181 HOH HOH . F 6 HOH A 115 515 44 HOH HOH . F 6 HOH A 116 516 119 HOH HOH . F 6 HOH A 117 517 83 HOH HOH . F 6 HOH A 118 518 90 HOH HOH . F 6 HOH A 119 519 49 HOH HOH . F 6 HOH A 120 520 70 HOH HOH . F 6 HOH A 121 521 105 HOH HOH . F 6 HOH A 122 522 231 HOH HOH . F 6 HOH A 123 523 208 HOH HOH . F 6 HOH A 124 524 148 HOH HOH . F 6 HOH A 125 525 183 HOH HOH . F 6 HOH A 126 526 87 HOH HOH . F 6 HOH A 127 527 14 HOH HOH . F 6 HOH A 128 528 122 HOH HOH . F 6 HOH A 129 529 98 HOH HOH . F 6 HOH A 130 530 144 HOH HOH . F 6 HOH A 131 531 27 HOH HOH . F 6 HOH A 132 532 188 HOH HOH . F 6 HOH A 133 533 162 HOH HOH . F 6 HOH A 134 534 92 HOH HOH . F 6 HOH A 135 535 116 HOH HOH . F 6 HOH A 136 536 226 HOH HOH . F 6 HOH A 137 537 96 HOH HOH . F 6 HOH A 138 538 169 HOH HOH . F 6 HOH A 139 539 115 HOH HOH . F 6 HOH A 140 540 71 HOH HOH . F 6 HOH A 141 541 82 HOH HOH . F 6 HOH A 142 542 236 HOH HOH . F 6 HOH A 143 543 161 HOH HOH . F 6 HOH A 144 544 68 HOH HOH . F 6 HOH A 145 545 198 HOH HOH . F 6 HOH A 146 546 127 HOH HOH . F 6 HOH A 147 547 160 HOH HOH . F 6 HOH A 148 548 130 HOH HOH . F 6 HOH A 149 549 167 HOH HOH . F 6 HOH A 150 550 12 HOH HOH . F 6 HOH A 151 551 189 HOH HOH . F 6 HOH A 152 552 136 HOH HOH . F 6 HOH A 153 553 137 HOH HOH . F 6 HOH A 154 554 6 HOH HOH . F 6 HOH A 155 555 140 HOH HOH . F 6 HOH A 156 556 69 HOH HOH . F 6 HOH A 157 557 229 HOH HOH . F 6 HOH A 158 558 30 HOH HOH . F 6 HOH A 159 559 109 HOH HOH . F 6 HOH A 160 560 179 HOH HOH . F 6 HOH A 161 561 23 HOH HOH . F 6 HOH A 162 562 232 HOH HOH . F 6 HOH A 163 563 172 HOH HOH . F 6 HOH A 164 564 80 HOH HOH . F 6 HOH A 165 565 97 HOH HOH . F 6 HOH A 166 566 2 HOH HOH . F 6 HOH A 167 567 39 HOH HOH . F 6 HOH A 168 568 133 HOH HOH . F 6 HOH A 169 569 61 HOH HOH . F 6 HOH A 170 570 131 HOH HOH . F 6 HOH A 171 571 132 HOH HOH . F 6 HOH A 172 572 95 HOH HOH . F 6 HOH A 173 573 176 HOH HOH . F 6 HOH A 174 574 197 HOH HOH . F 6 HOH A 175 575 159 HOH HOH . F 6 HOH A 176 576 177 HOH HOH . F 6 HOH A 177 577 155 HOH HOH . F 6 HOH A 178 578 135 HOH HOH . F 6 HOH A 179 579 106 HOH HOH . F 6 HOH A 180 580 28 HOH HOH . F 6 HOH A 181 581 102 HOH HOH . F 6 HOH A 182 582 38 HOH HOH . F 6 HOH A 183 583 235 HOH HOH . F 6 HOH A 184 584 195 HOH HOH . F 6 HOH A 185 585 228 HOH HOH . F 6 HOH A 186 586 204 HOH HOH . F 6 HOH A 187 587 100 HOH HOH . F 6 HOH A 188 588 205 HOH HOH . F 6 HOH A 189 589 33 HOH HOH . F 6 HOH A 190 590 120 HOH HOH . F 6 HOH A 191 591 178 HOH HOH . F 6 HOH A 192 592 174 HOH HOH . F 6 HOH A 193 593 125 HOH HOH . F 6 HOH A 194 594 124 HOH HOH . F 6 HOH A 195 595 156 HOH HOH . F 6 HOH A 196 596 51 HOH HOH . F 6 HOH A 197 597 107 HOH HOH . F 6 HOH A 198 598 224 HOH HOH . F 6 HOH A 199 599 233 HOH HOH . F 6 HOH A 200 600 223 HOH HOH . F 6 HOH A 201 601 81 HOH HOH . F 6 HOH A 202 602 163 HOH HOH . F 6 HOH A 203 603 164 HOH HOH . F 6 HOH A 204 604 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . E 5 -17.014 -23.033 -13.224 0.88 53.05 ? C2 BGC 304 A 1 HETATM 2 C C3 BGC . . . E 5 -18.428 -22.824 -12.682 0.88 59.86 ? C3 BGC 304 A 1 HETATM 3 C C4 BGC . . . E 5 -19.418 -23.848 -13.245 0.88 55.24 ? C4 BGC 304 A 1 HETATM 4 C C5 BGC . . . E 5 -18.832 -25.259 -13.2 0.88 48.83 ? C5 BGC 304 A 1 HETATM 5 C C6 BGC . . . E 5 -19.743 -26.338 -13.772 0.88 39.07 ? C6 BGC 304 A 1 HETATM 6 C C1 BGC . . . E 5 -16.637 -24.513 -13.229 0.88 42.64 ? C1 BGC 304 A 1 HETATM 7 O O1 BGC . . . E 5 -15.407 -24.648 -13.9 0.88 29.99 ? O1 BGC 304 A 1 HETATM 8 O O2 BGC . . . E 5 -16.071 -22.299 -12.46 0.88 42.37 ? O2 BGC 304 A 1 HETATM 9 O O3 BGC . . . E 5 -18.844 -21.512 -12.998 0.88 61.55 ? O3 BGC 304 A 1 HETATM 10 O O4 BGC . . . E 5 -20.586 -23.812 -12.47 0.88 55.16 ? O4 BGC 304 A 1 HETATM 11 O O5 BGC . . . E 5 -17.628 -25.249 -13.922 0.88 37.35 ? O5 BGC 304 A 1 HETATM 12 O O6 BGC . . . E 5 -19.971 -26.052 -15.126 0.88 40.12 ? O6 BGC 304 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #