data_5L83
#
_model_server_result.job_id            1Qb0KU2KkJUflSH-T56uVA 
_model_server_result.datetime_utc      '2024-11-25 14:11:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l83 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":205}' 
#
_entry.id    5L83 
#
_exptl.entry_id    5L83 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L83 
_cell.length_a            172.18 
_cell.length_b            172.18 
_cell.length_c            172.18 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L83 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        214 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,J,K,L,M,N,O,R 1 1 
B,C,E,F,G,H,I,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 M N N 
? 4 N N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5L83 
_atom_sites.fract_transf_matrix[1][1]    0.005808 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005808 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005808 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 201 1 SO4 SO4 . 
F 3 SO4 A 1 202 3 SO4 SO4 . 
G 3 SO4 A 1 203 6 SO4 SO4 . 
H 3 SO4 A 1 204 7 SO4 SO4 . 
I 4 EDO A 1 205 1 EDO EDO . 
J 3 SO4 B 1 201 2 SO4 SO4 . 
K 3 SO4 B 1 202 4 SO4 SO4 . 
L 3 SO4 B 1 203 5 SO4 SO4 . 
M 4 EDO B 1 204 2 EDO EDO . 
N 4 EDO B 1 205 3 EDO EDO . 
O 5 HOH C 1 101 85 HOH HOH . 
O 5 HOH C 2 102 216 HOH HOH . 
P 5 HOH D 1 101 80 HOH HOH . 
P 5 HOH D 2 102 151 HOH HOH . 
P 5 HOH D 3 103 42 HOH HOH . 
P 5 HOH D 4 104 148 HOH HOH . 
P 5 HOH D 5 105 149 HOH HOH . 
P 5 HOH D 6 106 147 HOH HOH . 
P 5 HOH D 7 107 198 HOH HOH . 
Q 5 HOH A 1 301 223 HOH HOH . 
Q 5 HOH A 2 302 167 HOH HOH . 
Q 5 HOH A 3 303 121 HOH HOH . 
Q 5 HOH A 4 304 46 HOH HOH . 
Q 5 HOH A 5 305 41 HOH HOH . 
Q 5 HOH A 6 306 196 HOH HOH . 
Q 5 HOH A 7 307 164 HOH HOH . 
Q 5 HOH A 8 308 192 HOH HOH . 
Q 5 HOH A 9 309 109 HOH HOH . 
Q 5 HOH A 10 310 214 HOH HOH . 
Q 5 HOH A 11 311 70 HOH HOH . 
Q 5 HOH A 12 312 209 HOH HOH . 
Q 5 HOH A 13 313 169 HOH HOH . 
Q 5 HOH A 14 314 27 HOH HOH . 
Q 5 HOH A 15 315 123 HOH HOH . 
Q 5 HOH A 16 316 86 HOH HOH . 
Q 5 HOH A 17 317 76 HOH HOH . 
Q 5 HOH A 18 318 40 HOH HOH . 
Q 5 HOH A 19 319 208 HOH HOH . 
Q 5 HOH A 20 320 110 HOH HOH . 
Q 5 HOH A 21 321 81 HOH HOH . 
Q 5 HOH A 22 322 35 HOH HOH . 
Q 5 HOH A 23 323 14 HOH HOH . 
Q 5 HOH A 24 324 77 HOH HOH . 
Q 5 HOH A 25 325 184 HOH HOH . 
Q 5 HOH A 26 326 152 HOH HOH . 
Q 5 HOH A 27 327 115 HOH HOH . 
Q 5 HOH A 28 328 200 HOH HOH . 
Q 5 HOH A 29 329 218 HOH HOH . 
Q 5 HOH A 30 330 67 HOH HOH . 
Q 5 HOH A 31 331 117 HOH HOH . 
Q 5 HOH A 32 332 87 HOH HOH . 
Q 5 HOH A 33 333 96 HOH HOH . 
Q 5 HOH A 34 334 234 HOH HOH . 
Q 5 HOH A 35 335 126 HOH HOH . 
Q 5 HOH A 36 336 215 HOH HOH . 
Q 5 HOH A 37 337 98 HOH HOH . 
Q 5 HOH A 38 338 91 HOH HOH . 
Q 5 HOH A 39 339 90 HOH HOH . 
Q 5 HOH A 40 340 156 HOH HOH . 
Q 5 HOH A 41 341 28 HOH HOH . 
Q 5 HOH A 42 342 231 HOH HOH . 
Q 5 HOH A 43 343 170 HOH HOH . 
Q 5 HOH A 44 344 34 HOH HOH . 
Q 5 HOH A 45 345 16 HOH HOH . 
Q 5 HOH A 46 346 68 HOH HOH . 
Q 5 HOH A 47 347 139 HOH HOH . 
Q 5 HOH A 48 348 1 HOH HOH . 
Q 5 HOH A 49 349 12 HOH HOH . 
Q 5 HOH A 50 350 60 HOH HOH . 
Q 5 HOH A 51 351 114 HOH HOH . 
Q 5 HOH A 52 352 119 HOH HOH . 
Q 5 HOH A 53 353 107 HOH HOH . 
Q 5 HOH A 54 354 127 HOH HOH . 
Q 5 HOH A 55 355 136 HOH HOH . 
Q 5 HOH A 56 356 88 HOH HOH . 
Q 5 HOH A 57 357 190 HOH HOH . 
Q 5 HOH A 58 358 162 HOH HOH . 
Q 5 HOH A 59 359 7 HOH HOH . 
Q 5 HOH A 60 360 154 HOH HOH . 
Q 5 HOH A 61 361 19 HOH HOH . 
Q 5 HOH A 62 362 26 HOH HOH . 
Q 5 HOH A 63 363 65 HOH HOH . 
Q 5 HOH A 64 364 105 HOH HOH . 
Q 5 HOH A 65 365 102 HOH HOH . 
Q 5 HOH A 66 366 97 HOH HOH . 
Q 5 HOH A 67 367 3 HOH HOH . 
Q 5 HOH A 68 368 103 HOH HOH . 
Q 5 HOH A 69 369 29 HOH HOH . 
Q 5 HOH A 70 370 36 HOH HOH . 
Q 5 HOH A 71 371 225 HOH HOH . 
Q 5 HOH A 72 372 10 HOH HOH . 
Q 5 HOH A 73 373 202 HOH HOH . 
Q 5 HOH A 74 374 122 HOH HOH . 
Q 5 HOH A 75 375 39 HOH HOH . 
Q 5 HOH A 76 376 163 HOH HOH . 
Q 5 HOH A 77 377 185 HOH HOH . 
Q 5 HOH A 78 378 18 HOH HOH . 
Q 5 HOH A 79 379 24 HOH HOH . 
Q 5 HOH A 80 380 83 HOH HOH . 
Q 5 HOH A 81 381 71 HOH HOH . 
Q 5 HOH A 82 382 15 HOH HOH . 
Q 5 HOH A 83 383 213 HOH HOH . 
Q 5 HOH A 84 384 58 HOH HOH . 
Q 5 HOH A 85 385 45 HOH HOH . 
Q 5 HOH A 86 386 220 HOH HOH . 
Q 5 HOH A 87 387 113 HOH HOH . 
Q 5 HOH A 88 388 228 HOH HOH . 
Q 5 HOH A 89 389 145 HOH HOH . 
Q 5 HOH A 90 390 143 HOH HOH . 
Q 5 HOH A 91 391 168 HOH HOH . 
Q 5 HOH A 92 392 89 HOH HOH . 
Q 5 HOH A 93 393 153 HOH HOH . 
Q 5 HOH A 94 394 203 HOH HOH . 
Q 5 HOH A 95 395 189 HOH HOH . 
Q 5 HOH A 96 396 30 HOH HOH . 
Q 5 HOH A 97 397 217 HOH HOH . 
Q 5 HOH A 98 398 177 HOH HOH . 
Q 5 HOH A 99 399 52 HOH HOH . 
Q 5 HOH A 100 400 44 HOH HOH . 
Q 5 HOH A 101 401 116 HOH HOH . 
Q 5 HOH A 102 402 194 HOH HOH . 
Q 5 HOH A 103 403 78 HOH HOH . 
Q 5 HOH A 104 404 133 HOH HOH . 
Q 5 HOH A 105 405 125 HOH HOH . 
Q 5 HOH A 106 406 79 HOH HOH . 
Q 5 HOH A 107 407 82 HOH HOH . 
Q 5 HOH A 108 408 183 HOH HOH . 
Q 5 HOH A 109 409 155 HOH HOH . 
Q 5 HOH A 110 410 129 HOH HOH . 
Q 5 HOH A 111 411 212 HOH HOH . 
Q 5 HOH A 112 412 227 HOH HOH . 
Q 5 HOH A 113 413 84 HOH HOH . 
Q 5 HOH A 114 414 175 HOH HOH . 
Q 5 HOH A 115 415 53 HOH HOH . 
Q 5 HOH A 116 416 138 HOH HOH . 
Q 5 HOH A 117 417 224 HOH HOH . 
Q 5 HOH A 118 418 73 HOH HOH . 
Q 5 HOH A 119 419 134 HOH HOH . 
Q 5 HOH A 120 420 135 HOH HOH . 
Q 5 HOH A 121 421 8 HOH HOH . 
Q 5 HOH A 122 422 131 HOH HOH . 
Q 5 HOH A 123 423 141 HOH HOH . 
Q 5 HOH A 124 424 128 HOH HOH . 
Q 5 HOH A 125 425 201 HOH HOH . 
Q 5 HOH A 126 426 132 HOH HOH . 
Q 5 HOH A 127 427 100 HOH HOH . 
R 5 HOH B 1 301 211 HOH HOH . 
R 5 HOH B 2 302 2 HOH HOH . 
R 5 HOH B 3 303 181 HOH HOH . 
R 5 HOH B 4 304 66 HOH HOH . 
R 5 HOH B 5 305 229 HOH HOH . 
R 5 HOH B 6 306 95 HOH HOH . 
R 5 HOH B 7 307 210 HOH HOH . 
R 5 HOH B 8 308 104 HOH HOH . 
R 5 HOH B 9 309 112 HOH HOH . 
R 5 HOH B 10 310 207 HOH HOH . 
R 5 HOH B 11 311 118 HOH HOH . 
R 5 HOH B 12 312 72 HOH HOH . 
R 5 HOH B 13 313 59 HOH HOH . 
R 5 HOH B 14 314 124 HOH HOH . 
R 5 HOH B 15 315 32 HOH HOH . 
R 5 HOH B 16 316 31 HOH HOH . 
R 5 HOH B 17 317 232 HOH HOH . 
R 5 HOH B 18 318 235 HOH HOH . 
R 5 HOH B 19 319 75 HOH HOH . 
R 5 HOH B 20 320 25 HOH HOH . 
R 5 HOH B 21 321 174 HOH HOH . 
R 5 HOH B 22 322 158 HOH HOH . 
R 5 HOH B 23 323 233 HOH HOH . 
R 5 HOH B 24 324 182 HOH HOH . 
R 5 HOH B 25 325 188 HOH HOH . 
R 5 HOH B 26 326 63 HOH HOH . 
R 5 HOH B 27 327 43 HOH HOH . 
R 5 HOH B 28 328 50 HOH HOH . 
R 5 HOH B 29 329 20 HOH HOH . 
R 5 HOH B 30 330 23 HOH HOH . 
R 5 HOH B 31 331 106 HOH HOH . 
R 5 HOH B 32 332 49 HOH HOH . 
R 5 HOH B 33 333 9 HOH HOH . 
R 5 HOH B 34 334 187 HOH HOH . 
R 5 HOH B 35 335 17 HOH HOH . 
R 5 HOH B 36 336 197 HOH HOH . 
R 5 HOH B 37 337 120 HOH HOH . 
R 5 HOH B 38 338 173 HOH HOH . 
R 5 HOH B 39 339 37 HOH HOH . 
R 5 HOH B 40 340 137 HOH HOH . 
R 5 HOH B 41 341 47 HOH HOH . 
R 5 HOH B 42 342 38 HOH HOH . 
R 5 HOH B 43 343 108 HOH HOH . 
R 5 HOH B 44 344 176 HOH HOH . 
R 5 HOH B 45 345 13 HOH HOH . 
R 5 HOH B 46 346 5 HOH HOH . 
R 5 HOH B 47 347 11 HOH HOH . 
R 5 HOH B 48 348 111 HOH HOH . 
R 5 HOH B 49 349 69 HOH HOH . 
R 5 HOH B 50 350 146 HOH HOH . 
R 5 HOH B 51 351 191 HOH HOH . 
R 5 HOH B 52 352 48 HOH HOH . 
R 5 HOH B 53 353 4 HOH HOH . 
R 5 HOH B 54 354 21 HOH HOH . 
R 5 HOH B 55 355 222 HOH HOH . 
R 5 HOH B 56 356 92 HOH HOH . 
R 5 HOH B 57 357 55 HOH HOH . 
R 5 HOH B 58 358 6 HOH HOH . 
R 5 HOH B 59 359 195 HOH HOH . 
R 5 HOH B 60 360 171 HOH HOH . 
R 5 HOH B 61 361 22 HOH HOH . 
R 5 HOH B 62 362 178 HOH HOH . 
R 5 HOH B 63 363 57 HOH HOH . 
R 5 HOH B 64 364 51 HOH HOH . 
R 5 HOH B 65 365 62 HOH HOH . 
R 5 HOH B 66 366 230 HOH HOH . 
R 5 HOH B 67 367 56 HOH HOH . 
R 5 HOH B 68 368 150 HOH HOH . 
R 5 HOH B 69 369 179 HOH HOH . 
R 5 HOH B 70 370 99 HOH HOH . 
R 5 HOH B 71 371 33 HOH HOH . 
R 5 HOH B 72 372 204 HOH HOH . 
R 5 HOH B 73 373 64 HOH HOH . 
R 5 HOH B 74 374 206 HOH HOH . 
R 5 HOH B 75 375 172 HOH HOH . 
R 5 HOH B 76 376 180 HOH HOH . 
R 5 HOH B 77 377 94 HOH HOH . 
R 5 HOH B 78 378 93 HOH HOH . 
R 5 HOH B 79 379 61 HOH HOH . 
R 5 HOH B 80 380 166 HOH HOH . 
R 5 HOH B 81 381 159 HOH HOH . 
R 5 HOH B 82 382 205 HOH HOH . 
R 5 HOH B 83 383 144 HOH HOH . 
R 5 HOH B 84 384 221 HOH HOH . 
R 5 HOH B 85 385 142 HOH HOH . 
R 5 HOH B 86 386 199 HOH HOH . 
R 5 HOH B 87 387 130 HOH HOH . 
R 5 HOH B 88 388 161 HOH HOH . 
R 5 HOH B 89 389 157 HOH HOH . 
R 5 HOH B 90 390 54 HOH HOH . 
R 5 HOH B 91 391 101 HOH HOH . 
R 5 HOH B 92 392 193 HOH HOH . 
R 5 HOH B 93 393 165 HOH HOH . 
R 5 HOH B 94 394 140 HOH HOH . 
R 5 HOH B 95 395 219 HOH HOH . 
R 5 HOH B 96 396 160 HOH HOH . 
R 5 HOH B 97 397 74 HOH HOH . 
R 5 HOH B 98 398 186 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 4 -0.221 -19.67 -24.681 1 44.94 ? C1 EDO 205 A 1 
HETATM 2 O O1 EDO . . . I 4 -0.553 -18.581 -23.809 1 44.6 ? O1 EDO 205 A 1 
HETATM 3 C C2 EDO . . . I 4 0.513 -20.8 -23.934 1 46.68 ? C2 EDO 205 A 1 
HETATM 4 O O2 EDO . . . I 4 1.428 -21.48 -24.799 1 46.2 ? O2 EDO 205 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#