data_5L8E # _model_server_result.job_id dKLZzeUXLekbFSN8SB2bCA _model_server_result.datetime_utc '2024-10-15 11:24:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5L8E # _exptl.entry_id 5L8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L8E _cell.length_a 73.303 _cell.length_b 131.601 _cell.length_c 148.672 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,R 1 1 B,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5L8E _atom_sites.fract_transf_matrix[1][1] 0.013642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 601 561 GOL GOL . E 3 GOL A 1 602 562 GOL GOL . F 3 GOL A 1 603 563 GOL GOL . G 3 GOL A 1 604 564 GOL GOL . H 3 GOL A 1 605 574 GOL GOL . I 3 GOL A 1 606 575 GOL GOL . J 3 GOL A 1 607 578 GOL GOL . K 3 GOL B 1 601 561 GOL GOL . L 3 GOL B 1 602 562 GOL GOL . M 3 GOL B 1 603 565 GOL GOL . N 3 GOL B 1 604 567 GOL GOL . O 3 GOL B 1 605 568 GOL GOL . P 3 GOL B 1 606 569 GOL GOL . Q 3 GOL B 1 607 577 GOL GOL . R 4 HOH A 1 701 482 HOH HOH . R 4 HOH A 2 702 464 HOH HOH . R 4 HOH A 3 703 480 HOH HOH . R 4 HOH A 4 704 10 HOH HOH . R 4 HOH A 5 705 407 HOH HOH . R 4 HOH A 6 706 61 HOH HOH . R 4 HOH A 7 707 465 HOH HOH . R 4 HOH A 8 708 18 HOH HOH . R 4 HOH A 9 709 387 HOH HOH . R 4 HOH A 10 710 343 HOH HOH . R 4 HOH A 11 711 56 HOH HOH . R 4 HOH A 12 712 203 HOH HOH . R 4 HOH A 13 713 43 HOH HOH . R 4 HOH A 14 714 57 HOH HOH . R 4 HOH A 15 715 271 HOH HOH . R 4 HOH A 16 716 296 HOH HOH . R 4 HOH A 17 717 68 HOH HOH . R 4 HOH A 18 718 487 HOH HOH . R 4 HOH A 19 719 493 HOH HOH . R 4 HOH A 20 720 145 HOH HOH . R 4 HOH A 21 721 32 HOH HOH . R 4 HOH A 22 722 441 HOH HOH . R 4 HOH A 23 723 463 HOH HOH . R 4 HOH A 24 724 50 HOH HOH . R 4 HOH A 25 725 215 HOH HOH . R 4 HOH A 26 726 39 HOH HOH . R 4 HOH A 27 727 11 HOH HOH . R 4 HOH A 28 728 143 HOH HOH . R 4 HOH A 29 729 9 HOH HOH . R 4 HOH A 30 730 29 HOH HOH . R 4 HOH A 31 731 424 HOH HOH . R 4 HOH A 32 732 6 HOH HOH . R 4 HOH A 33 733 16 HOH HOH . R 4 HOH A 34 734 72 HOH HOH . R 4 HOH A 35 735 292 HOH HOH . R 4 HOH A 36 736 281 HOH HOH . R 4 HOH A 37 737 36 HOH HOH . R 4 HOH A 38 738 119 HOH HOH . R 4 HOH A 39 739 53 HOH HOH . R 4 HOH A 40 740 44 HOH HOH . R 4 HOH A 41 741 19 HOH HOH . R 4 HOH A 42 742 447 HOH HOH . R 4 HOH A 43 743 59 HOH HOH . R 4 HOH A 44 744 38 HOH HOH . R 4 HOH A 45 745 164 HOH HOH . R 4 HOH A 46 746 12 HOH HOH . R 4 HOH A 47 747 66 HOH HOH . R 4 HOH A 48 748 391 HOH HOH . R 4 HOH A 49 749 477 HOH HOH . R 4 HOH A 50 750 230 HOH HOH . R 4 HOH A 51 751 150 HOH HOH . R 4 HOH A 52 752 434 HOH HOH . R 4 HOH A 53 753 440 HOH HOH . R 4 HOH A 54 754 7 HOH HOH . R 4 HOH A 55 755 310 HOH HOH . R 4 HOH A 56 756 199 HOH HOH . R 4 HOH A 57 757 173 HOH HOH . R 4 HOH A 58 758 397 HOH HOH . R 4 HOH A 59 759 23 HOH HOH . R 4 HOH A 60 760 245 HOH HOH . R 4 HOH A 61 761 13 HOH HOH . R 4 HOH A 62 762 444 HOH HOH . R 4 HOH A 63 763 55 HOH HOH . R 4 HOH A 64 764 153 HOH HOH . R 4 HOH A 65 765 423 HOH HOH . R 4 HOH A 66 766 408 HOH HOH . R 4 HOH A 67 767 140 HOH HOH . R 4 HOH A 68 768 471 HOH HOH . R 4 HOH A 69 769 328 HOH HOH . R 4 HOH A 70 770 120 HOH HOH . R 4 HOH A 71 771 117 HOH HOH . R 4 HOH A 72 772 28 HOH HOH . R 4 HOH A 73 773 234 HOH HOH . R 4 HOH A 74 774 446 HOH HOH . R 4 HOH A 75 775 458 HOH HOH . R 4 HOH A 76 776 322 HOH HOH . R 4 HOH A 77 777 244 HOH HOH . R 4 HOH A 78 778 416 HOH HOH . R 4 HOH A 79 779 313 HOH HOH . R 4 HOH A 80 780 3 HOH HOH . R 4 HOH A 81 781 60 HOH HOH . R 4 HOH A 82 782 323 HOH HOH . R 4 HOH A 83 783 437 HOH HOH . R 4 HOH A 84 784 123 HOH HOH . R 4 HOH A 85 785 402 HOH HOH . R 4 HOH A 86 786 312 HOH HOH . R 4 HOH A 87 787 368 HOH HOH . R 4 HOH A 88 788 439 HOH HOH . R 4 HOH A 89 789 275 HOH HOH . R 4 HOH A 90 790 188 HOH HOH . R 4 HOH A 91 791 293 HOH HOH . R 4 HOH A 92 792 415 HOH HOH . R 4 HOH A 93 793 489 HOH HOH . R 4 HOH A 94 794 418 HOH HOH . R 4 HOH A 95 795 231 HOH HOH . R 4 HOH A 96 796 76 HOH HOH . R 4 HOH A 97 797 454 HOH HOH . R 4 HOH A 98 798 246 HOH HOH . R 4 HOH A 99 799 334 HOH HOH . R 4 HOH A 100 800 138 HOH HOH . R 4 HOH A 101 801 137 HOH HOH . R 4 HOH A 102 802 303 HOH HOH . R 4 HOH A 103 803 297 HOH HOH . R 4 HOH A 104 804 460 HOH HOH . R 4 HOH A 105 805 363 HOH HOH . R 4 HOH A 106 806 151 HOH HOH . R 4 HOH A 107 807 452 HOH HOH . R 4 HOH A 108 808 420 HOH HOH . R 4 HOH A 109 809 239 HOH HOH . R 4 HOH A 110 810 443 HOH HOH . R 4 HOH A 111 811 467 HOH HOH . R 4 HOH A 112 812 405 HOH HOH . R 4 HOH A 113 813 384 HOH HOH . R 4 HOH A 114 814 232 HOH HOH . R 4 HOH A 115 815 422 HOH HOH . R 4 HOH A 116 816 242 HOH HOH . R 4 HOH A 117 817 186 HOH HOH . R 4 HOH A 118 818 314 HOH HOH . R 4 HOH A 119 819 445 HOH HOH . R 4 HOH A 120 820 476 HOH HOH . R 4 HOH A 121 821 427 HOH HOH . R 4 HOH A 122 822 326 HOH HOH . R 4 HOH A 123 823 466 HOH HOH . R 4 HOH A 124 824 356 HOH HOH . R 4 HOH A 125 825 374 HOH HOH . R 4 HOH A 126 826 388 HOH HOH . R 4 HOH A 127 827 435 HOH HOH . R 4 HOH A 128 828 378 HOH HOH . R 4 HOH A 129 829 369 HOH HOH . R 4 HOH A 130 830 357 HOH HOH . R 4 HOH A 131 831 381 HOH HOH . R 4 HOH A 132 832 475 HOH HOH . R 4 HOH A 133 833 305 HOH HOH . R 4 HOH A 134 834 185 HOH HOH . R 4 HOH A 135 835 389 HOH HOH . R 4 HOH A 136 836 304 HOH HOH . R 4 HOH A 137 837 346 HOH HOH . R 4 HOH A 138 838 318 HOH HOH . R 4 HOH A 139 839 163 HOH HOH . R 4 HOH A 140 840 315 HOH HOH . R 4 HOH A 141 841 31 HOH HOH . R 4 HOH A 142 842 436 HOH HOH . R 4 HOH A 143 843 165 HOH HOH . R 4 HOH A 144 844 197 HOH HOH . R 4 HOH A 145 845 236 HOH HOH . R 4 HOH A 146 846 419 HOH HOH . R 4 HOH A 147 847 170 HOH HOH . S 4 HOH B 1 701 133 HOH HOH . S 4 HOH B 2 702 421 HOH HOH . S 4 HOH B 3 703 492 HOH HOH . S 4 HOH B 4 704 491 HOH HOH . S 4 HOH B 5 705 353 HOH HOH . S 4 HOH B 6 706 64 HOH HOH . S 4 HOH B 7 707 47 HOH HOH . S 4 HOH B 8 708 71 HOH HOH . S 4 HOH B 9 709 362 HOH HOH . S 4 HOH B 10 710 311 HOH HOH . S 4 HOH B 11 711 410 HOH HOH . S 4 HOH B 12 712 69 HOH HOH . S 4 HOH B 13 713 284 HOH HOH . S 4 HOH B 14 714 58 HOH HOH . S 4 HOH B 15 715 124 HOH HOH . S 4 HOH B 16 716 393 HOH HOH . S 4 HOH B 17 717 411 HOH HOH . S 4 HOH B 18 718 394 HOH HOH . S 4 HOH B 19 719 51 HOH HOH . S 4 HOH B 20 720 1 HOH HOH . S 4 HOH B 21 721 176 HOH HOH . S 4 HOH B 22 722 468 HOH HOH . S 4 HOH B 23 723 74 HOH HOH . S 4 HOH B 24 724 221 HOH HOH . S 4 HOH B 25 725 62 HOH HOH . S 4 HOH B 26 726 324 HOH HOH . S 4 HOH B 27 727 70 HOH HOH . S 4 HOH B 28 728 336 HOH HOH . S 4 HOH B 29 729 25 HOH HOH . S 4 HOH B 30 730 4 HOH HOH . S 4 HOH B 31 731 156 HOH HOH . S 4 HOH B 32 732 22 HOH HOH . S 4 HOH B 33 733 428 HOH HOH . S 4 HOH B 34 734 401 HOH HOH . S 4 HOH B 35 735 395 HOH HOH . S 4 HOH B 36 736 34 HOH HOH . S 4 HOH B 37 737 192 HOH HOH . S 4 HOH B 38 738 112 HOH HOH . S 4 HOH B 39 739 27 HOH HOH . S 4 HOH B 40 740 41 HOH HOH . S 4 HOH B 41 741 189 HOH HOH . S 4 HOH B 42 742 157 HOH HOH . S 4 HOH B 43 743 484 HOH HOH . S 4 HOH B 44 744 442 HOH HOH . S 4 HOH B 45 745 399 HOH HOH . S 4 HOH B 46 746 177 HOH HOH . S 4 HOH B 47 747 280 HOH HOH . S 4 HOH B 48 748 180 HOH HOH . S 4 HOH B 49 749 398 HOH HOH . S 4 HOH B 50 750 490 HOH HOH . S 4 HOH B 51 751 8 HOH HOH . S 4 HOH B 52 752 481 HOH HOH . S 4 HOH B 53 753 49 HOH HOH . S 4 HOH B 54 754 5 HOH HOH . S 4 HOH B 55 755 307 HOH HOH . S 4 HOH B 56 756 225 HOH HOH . S 4 HOH B 57 757 425 HOH HOH . S 4 HOH B 58 758 181 HOH HOH . S 4 HOH B 59 759 319 HOH HOH . S 4 HOH B 60 760 403 HOH HOH . S 4 HOH B 61 761 426 HOH HOH . S 4 HOH B 62 762 17 HOH HOH . S 4 HOH B 63 763 400 HOH HOH . S 4 HOH B 64 764 392 HOH HOH . S 4 HOH B 65 765 65 HOH HOH . S 4 HOH B 66 766 272 HOH HOH . S 4 HOH B 67 767 2 HOH HOH . S 4 HOH B 68 768 212 HOH HOH . S 4 HOH B 69 769 224 HOH HOH . S 4 HOH B 70 770 461 HOH HOH . S 4 HOH B 71 771 42 HOH HOH . S 4 HOH B 72 772 383 HOH HOH . S 4 HOH B 73 773 327 HOH HOH . S 4 HOH B 74 774 302 HOH HOH . S 4 HOH B 75 775 147 HOH HOH . S 4 HOH B 76 776 283 HOH HOH . S 4 HOH B 77 777 348 HOH HOH . S 4 HOH B 78 778 349 HOH HOH . S 4 HOH B 79 779 298 HOH HOH . S 4 HOH B 80 780 35 HOH HOH . S 4 HOH B 81 781 126 HOH HOH . S 4 HOH B 82 782 451 HOH HOH . S 4 HOH B 83 783 294 HOH HOH . S 4 HOH B 84 784 217 HOH HOH . S 4 HOH B 85 785 453 HOH HOH . S 4 HOH B 86 786 121 HOH HOH . S 4 HOH B 87 787 414 HOH HOH . S 4 HOH B 88 788 191 HOH HOH . S 4 HOH B 89 789 209 HOH HOH . S 4 HOH B 90 790 233 HOH HOH . S 4 HOH B 91 791 449 HOH HOH . S 4 HOH B 92 792 139 HOH HOH . S 4 HOH B 93 793 457 HOH HOH . S 4 HOH B 94 794 413 HOH HOH . S 4 HOH B 95 795 15 HOH HOH . S 4 HOH B 96 796 30 HOH HOH . S 4 HOH B 97 797 361 HOH HOH . S 4 HOH B 98 798 300 HOH HOH . S 4 HOH B 99 799 308 HOH HOH . S 4 HOH B 100 800 417 HOH HOH . S 4 HOH B 101 801 317 HOH HOH . S 4 HOH B 102 802 33 HOH HOH . S 4 HOH B 103 803 386 HOH HOH . S 4 HOH B 104 804 194 HOH HOH . S 4 HOH B 105 805 144 HOH HOH . S 4 HOH B 106 806 332 HOH HOH . S 4 HOH B 107 807 459 HOH HOH . S 4 HOH B 108 808 223 HOH HOH . S 4 HOH B 109 809 161 HOH HOH . S 4 HOH B 110 810 172 HOH HOH . S 4 HOH B 111 811 14 HOH HOH . S 4 HOH B 112 812 190 HOH HOH . S 4 HOH B 113 813 229 HOH HOH . S 4 HOH B 114 814 130 HOH HOH . S 4 HOH B 115 815 146 HOH HOH . S 4 HOH B 116 816 347 HOH HOH . S 4 HOH B 117 817 472 HOH HOH . S 4 HOH B 118 818 469 HOH HOH . S 4 HOH B 119 819 274 HOH HOH . S 4 HOH B 120 820 195 HOH HOH . S 4 HOH B 121 821 483 HOH HOH . S 4 HOH B 122 822 462 HOH HOH . S 4 HOH B 123 823 166 HOH HOH . S 4 HOH B 124 824 162 HOH HOH . S 4 HOH B 125 825 335 HOH HOH . S 4 HOH B 126 826 325 HOH HOH . S 4 HOH B 127 827 273 HOH HOH . S 4 HOH B 128 828 184 HOH HOH . S 4 HOH B 129 829 455 HOH HOH . S 4 HOH B 130 830 193 HOH HOH . S 4 HOH B 131 831 433 HOH HOH . S 4 HOH B 132 832 218 HOH HOH . S 4 HOH B 133 833 448 HOH HOH . S 4 HOH B 134 834 306 HOH HOH . S 4 HOH B 135 835 479 HOH HOH . S 4 HOH B 136 836 456 HOH HOH . S 4 HOH B 137 837 136 HOH HOH . S 4 HOH B 138 838 46 HOH HOH . S 4 HOH B 139 839 321 HOH HOH . S 4 HOH B 140 840 175 HOH HOH . S 4 HOH B 141 841 429 HOH HOH . S 4 HOH B 142 842 396 HOH HOH . S 4 HOH B 143 843 154 HOH HOH . S 4 HOH B 144 844 160 HOH HOH . S 4 HOH B 145 845 340 HOH HOH . S 4 HOH B 146 846 478 HOH HOH . S 4 HOH B 147 847 228 HOH HOH . S 4 HOH B 148 848 222 HOH HOH . S 4 HOH B 149 849 341 HOH HOH . S 4 HOH B 150 850 333 HOH HOH . S 4 HOH B 151 851 486 HOH HOH . S 4 HOH B 152 852 183 HOH HOH . S 4 HOH B 153 853 430 HOH HOH . S 4 HOH B 154 854 169 HOH HOH . S 4 HOH B 155 855 470 HOH HOH . S 4 HOH B 156 856 377 HOH HOH . S 4 HOH B 157 857 485 HOH HOH . S 4 HOH B 158 858 376 HOH HOH . S 4 HOH B 159 859 240 HOH HOH . S 4 HOH B 160 860 412 HOH HOH . S 4 HOH B 161 861 438 HOH HOH . S 4 HOH B 162 862 155 HOH HOH . S 4 HOH B 163 863 432 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 54.487 29.071 49.754 1 88.81 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . D 3 53.249 28.59 49.202 1 84.36 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . D 3 55.309 29.963 48.807 1 89.14 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . D 3 55.098 31.336 49.167 1 84.96 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . D 3 55 29.795 47.311 1 87.99 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . D 3 56.234 29.748 46.587 1 90.63 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #