data_5L8I # _model_server_result.job_id d3q29-Nr1Zkx5WSQI589rA _model_server_result.datetime_utc '2024-11-22 22:39:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5L8I # _exptl.entry_id 5L8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.55 _cell.angle_gamma 90 _cell.entry_id 5L8I _cell.length_a 46.952 _cell.length_b 64.114 _cell.length_c 58.765 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,H 1 1 B,E,F,G,I 2 1 C,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 224 n n O22 H22 P33 sing 225 n n C21 C20 P33 sing 226 n n C21 H211 P33 sing 227 n n C21 H212 P33 sing 228 n n C20 O19 P33 sing 229 n n C20 H201 P33 sing 230 n n C20 H202 P33 sing 231 n n O19 C18 P33 sing 232 n n C18 C17 P33 sing 233 n n C18 H181 P33 sing 234 n n C18 H182 P33 sing 235 n n C17 O16 P33 sing 236 n n C17 H171 P33 sing 237 n n C17 H172 P33 sing 238 n n O16 C15 P33 sing 239 n n C15 C14 P33 sing 240 n n C15 H151 P33 sing 241 n n C15 H152 P33 sing 242 n n C14 O13 P33 sing 243 n n C14 H141 P33 sing 244 n n C14 H142 P33 sing 245 n n O13 C12 P33 sing 246 n n C12 C11 P33 sing 247 n n C12 H121 P33 sing 248 n n C12 H122 P33 sing 249 n n C11 O10 P33 sing 250 n n C11 H111 P33 sing 251 n n C11 H112 P33 sing 252 n n O10 C9 P33 sing 253 n n C9 C8 P33 sing 254 n n C9 H91 P33 sing 255 n n C9 H92 P33 sing 256 n n C8 O7 P33 sing 257 n n C8 H81 P33 sing 258 n n C8 H82 P33 sing 259 n n O7 C6 P33 sing 260 n n C6 C5 P33 sing 261 n n C6 H61 P33 sing 262 n n C6 H62 P33 sing 263 n n C5 O4 P33 sing 264 n n C5 H51 P33 sing 265 n n C5 H52 P33 sing 266 n n O4 C3 P33 sing 267 n n C3 C2 P33 sing 268 n n C3 H31 P33 sing 269 n n C3 H32 P33 sing 270 n n C2 O1 P33 sing 271 n n C2 H21 P33 sing 272 n n C2 H22A P33 sing 273 n n O1 HO1 P33 sing 274 n n # _atom_sites.entry_id 5L8I _atom_sites.fract_transf_matrix[1][1] 0.021298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001694 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PGE A 1 201 1 PGE 123 . E 3 P33 B 1 201 1 P33 P33 . F 4 PEG B 1 202 1 PEG PEG . G 5 PG4 B 1 203 1 PG4 PG4 . H 6 HOH A 1 301 47 HOH HOH . H 6 HOH A 2 302 58 HOH HOH . H 6 HOH A 3 303 43 HOH HOH . H 6 HOH A 4 304 18 HOH HOH . H 6 HOH A 5 305 48 HOH HOH . H 6 HOH A 6 306 28 HOH HOH . H 6 HOH A 7 307 13 HOH HOH . H 6 HOH A 8 308 2 HOH HOH . H 6 HOH A 9 309 21 HOH HOH . H 6 HOH A 10 310 30 HOH HOH . H 6 HOH A 11 311 16 HOH HOH . H 6 HOH A 12 312 33 HOH HOH . H 6 HOH A 13 313 14 HOH HOH . H 6 HOH A 14 314 23 HOH HOH . H 6 HOH A 15 315 25 HOH HOH . H 6 HOH A 16 316 31 HOH HOH . H 6 HOH A 17 317 45 HOH HOH . H 6 HOH A 18 318 60 HOH HOH . H 6 HOH A 19 319 17 HOH HOH . H 6 HOH A 20 320 26 HOH HOH . H 6 HOH A 21 321 6 HOH HOH . H 6 HOH A 22 322 57 HOH HOH . H 6 HOH A 23 323 19 HOH HOH . I 6 HOH B 1 301 36 HOH HOH . I 6 HOH B 2 302 44 HOH HOH . I 6 HOH B 3 303 38 HOH HOH . I 6 HOH B 4 304 5 HOH HOH . I 6 HOH B 5 305 55 HOH HOH . I 6 HOH B 6 306 9 HOH HOH . I 6 HOH B 7 307 42 HOH HOH . I 6 HOH B 8 308 20 HOH HOH . I 6 HOH B 9 309 15 HOH HOH . I 6 HOH B 10 310 10 HOH HOH . I 6 HOH B 11 311 34 HOH HOH . I 6 HOH B 12 312 46 HOH HOH . I 6 HOH B 13 313 37 HOH HOH . I 6 HOH B 14 314 41 HOH HOH . I 6 HOH B 15 315 7 HOH HOH . I 6 HOH B 16 316 61 HOH HOH . I 6 HOH B 17 317 40 HOH HOH . I 6 HOH B 18 318 11 HOH HOH . I 6 HOH B 19 319 32 HOH HOH . I 6 HOH B 20 320 39 HOH HOH . I 6 HOH B 21 321 50 HOH HOH . I 6 HOH B 22 322 3 HOH HOH . I 6 HOH B 23 323 8 HOH HOH . I 6 HOH B 24 324 56 HOH HOH . I 6 HOH B 25 325 22 HOH HOH . I 6 HOH B 26 326 4 HOH HOH . I 6 HOH B 27 327 27 HOH HOH . J 6 HOH C 1 201 12 HOH HOH . J 6 HOH C 2 202 51 HOH HOH . J 6 HOH C 3 203 53 HOH HOH . J 6 HOH C 4 204 52 HOH HOH . J 6 HOH C 5 205 54 HOH HOH . J 6 HOH C 6 206 49 HOH HOH . J 6 HOH C 7 207 29 HOH HOH . J 6 HOH C 8 208 59 HOH HOH . J 6 HOH C 9 209 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . E 3 66 -6.124 79.475 1 59.58 ? O22 P33 201 B 1 HETATM 2 C C21 P33 . . . E 3 65.349 -4.887 79.161 1 58.52 ? C21 P33 201 B 1 HETATM 3 C C20 P33 . . . E 3 64.951 -4.167 80.447 1 56.78 ? C20 P33 201 B 1 HETATM 4 O O19 P33 . . . E 3 65.687 -2.946 80.572 1 54.04 ? O19 P33 201 B 1 HETATM 5 C C18 P33 . . . E 3 65.076 -2.032 81.475 1 50.51 ? C18 P33 201 B 1 HETATM 6 C C17 P33 . . . E 3 65.984 -0.826 81.653 1 48.98 ? C17 P33 201 B 1 HETATM 7 O O16 P33 . . . E 3 65.926 -0.036 80.463 1 47.11 ? O16 P33 201 B 1 HETATM 8 C C15 P33 . . . E 3 65.186 1.175 80.601 1 45.42 ? C15 P33 201 B 1 HETATM 9 C C14 P33 . . . E 3 65.318 2.021 79.34 1 44.88 ? C14 P33 201 B 1 HETATM 10 O O13 P33 . . . E 3 64.189 1.777 78.505 1 45.45 ? O13 P33 201 B 1 HETATM 11 C C12 P33 . . . E 3 64.438 2.004 77.12 1 44.3 ? C12 P33 201 B 1 HETATM 12 C C11 P33 . . . E 3 63.26 1.497 76.296 1 42.56 ? C11 P33 201 B 1 HETATM 13 O O10 P33 . . . E 3 63.682 1.137 74.976 1 44.39 ? O10 P33 201 B 1 HETATM 14 C C9 P33 . . . E 3 64.12 2.265 74.217 1 43.02 ? C9 P33 201 B 1 HETATM 15 C C8 P33 . . . E 3 64.435 1.876 72.784 1 41.53 ? C8 P33 201 B 1 HETATM 16 O O7 P33 . . . E 3 65.335 2.856 72.266 1 39.5 ? O7 P33 201 B 1 HETATM 17 C C6 P33 . . . E 3 64.675 3.958 71.664 1 37.77 ? C6 P33 201 B 1 HETATM 18 C C5 P33 . . . E 3 65.728 5.014 71.39 1 38.31 ? C5 P33 201 B 1 HETATM 19 O O4 P33 . . . E 3 65.742 5.963 72.452 1 38.19 ? O4 P33 201 B 1 HETATM 20 C C3 P33 . . . E 3 66.568 7.078 72.127 1 37.96 ? C3 P33 201 B 1 HETATM 21 C C2 P33 . . . E 3 66.582 8.059 73.291 1 37.64 ? C2 P33 201 B 1 HETATM 22 O O1 P33 . . . E 3 67.691 7.737 74.124 1 37.85 ? O1 P33 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 22 #