data_5L8J
#
_model_server_result.job_id            FjeXATZ1iM9CcIJk525bPQ 
_model_server_result.datetime_utc      '2024-11-22 19:43:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5L8J 
#
_exptl.entry_id    5L8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L8J 
_cell.length_a            91.23 
_cell.length_b            111.12 
_cell.length_c            41.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 23 B CYS 23 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 127 n n 
C1 C2 EDO sing 128 n n 
C1 H11 EDO sing 129 n n 
C1 H12 EDO sing 130 n n 
O1 HO1 EDO sing 131 n n 
C2 O2 EDO sing 132 n n 
C2 H21 EDO sing 133 n n 
C2 H22 EDO sing 134 n n 
O2 HO2 EDO sing 135 n n 
#
_atom_sites.entry_id                     5L8J 
_atom_sites.fract_transf_matrix[1][1]    0.010961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ADP A 1 501 1 ADP ADP . 
D 4 EDO A 1 502 2 EDO EDO . 
E 4 EDO A 1 503 3 EDO EDO . 
F 5 PEG A 1 504 4 PEG PEG . 
G 5 PEG A 1 505 5 PEG PEG . 
H 6 HOH A 1 601 128 HOH HOH . 
H 6 HOH A 2 602 29 HOH HOH . 
H 6 HOH A 3 603 136 HOH HOH . 
H 6 HOH A 4 604 197 HOH HOH . 
H 6 HOH A 5 605 146 HOH HOH . 
H 6 HOH A 6 606 143 HOH HOH . 
H 6 HOH A 7 607 26 HOH HOH . 
H 6 HOH A 8 608 93 HOH HOH . 
H 6 HOH A 9 609 18 HOH HOH . 
H 6 HOH A 10 610 60 HOH HOH . 
H 6 HOH A 11 611 19 HOH HOH . 
H 6 HOH A 12 612 42 HOH HOH . 
H 6 HOH A 13 613 156 HOH HOH . 
H 6 HOH A 14 614 11 HOH HOH . 
H 6 HOH A 15 615 36 HOH HOH . 
H 6 HOH A 16 616 75 HOH HOH . 
H 6 HOH A 17 617 123 HOH HOH . 
H 6 HOH A 18 618 105 HOH HOH . 
H 6 HOH A 19 619 16 HOH HOH . 
H 6 HOH A 20 620 109 HOH HOH . 
H 6 HOH A 21 621 13 HOH HOH . 
H 6 HOH A 22 622 110 HOH HOH . 
H 6 HOH A 23 623 140 HOH HOH . 
H 6 HOH A 24 624 8 HOH HOH . 
H 6 HOH A 25 625 104 HOH HOH . 
H 6 HOH A 26 626 72 HOH HOH . 
H 6 HOH A 27 627 30 HOH HOH . 
H 6 HOH A 28 628 85 HOH HOH . 
H 6 HOH A 29 629 149 HOH HOH . 
H 6 HOH A 30 630 52 HOH HOH . 
H 6 HOH A 31 631 48 HOH HOH . 
H 6 HOH A 32 632 184 HOH HOH . 
H 6 HOH A 33 633 3 HOH HOH . 
H 6 HOH A 34 634 50 HOH HOH . 
H 6 HOH A 35 635 35 HOH HOH . 
H 6 HOH A 36 636 12 HOH HOH . 
H 6 HOH A 37 637 81 HOH HOH . 
H 6 HOH A 38 638 25 HOH HOH . 
H 6 HOH A 39 639 22 HOH HOH . 
H 6 HOH A 40 640 32 HOH HOH . 
H 6 HOH A 41 641 27 HOH HOH . 
H 6 HOH A 42 642 100 HOH HOH . 
H 6 HOH A 43 643 130 HOH HOH . 
H 6 HOH A 44 644 20 HOH HOH . 
H 6 HOH A 45 645 66 HOH HOH . 
H 6 HOH A 46 646 28 HOH HOH . 
H 6 HOH A 47 647 37 HOH HOH . 
H 6 HOH A 48 648 1 HOH HOH . 
H 6 HOH A 49 649 139 HOH HOH . 
H 6 HOH A 50 650 24 HOH HOH . 
H 6 HOH A 51 651 14 HOH HOH . 
H 6 HOH A 52 652 51 HOH HOH . 
H 6 HOH A 53 653 121 HOH HOH . 
H 6 HOH A 54 654 2 HOH HOH . 
H 6 HOH A 55 655 148 HOH HOH . 
H 6 HOH A 56 656 57 HOH HOH . 
H 6 HOH A 57 657 10 HOH HOH . 
H 6 HOH A 58 658 124 HOH HOH . 
H 6 HOH A 59 659 112 HOH HOH . 
H 6 HOH A 60 660 157 HOH HOH . 
H 6 HOH A 61 661 59 HOH HOH . 
H 6 HOH A 62 662 62 HOH HOH . 
H 6 HOH A 63 663 137 HOH HOH . 
H 6 HOH A 64 664 187 HOH HOH . 
H 6 HOH A 65 665 21 HOH HOH . 
H 6 HOH A 66 666 6 HOH HOH . 
H 6 HOH A 67 667 45 HOH HOH . 
H 6 HOH A 68 668 170 HOH HOH . 
H 6 HOH A 69 669 31 HOH HOH . 
H 6 HOH A 70 670 33 HOH HOH . 
H 6 HOH A 71 671 5 HOH HOH . 
H 6 HOH A 72 672 17 HOH HOH . 
H 6 HOH A 73 673 171 HOH HOH . 
H 6 HOH A 74 674 65 HOH HOH . 
H 6 HOH A 75 675 169 HOH HOH . 
H 6 HOH A 76 676 84 HOH HOH . 
H 6 HOH A 77 677 113 HOH HOH . 
H 6 HOH A 78 678 135 HOH HOH . 
H 6 HOH A 79 679 155 HOH HOH . 
H 6 HOH A 80 680 61 HOH HOH . 
H 6 HOH A 81 681 41 HOH HOH . 
H 6 HOH A 82 682 88 HOH HOH . 
H 6 HOH A 83 683 74 HOH HOH . 
H 6 HOH A 84 684 125 HOH HOH . 
H 6 HOH A 85 685 153 HOH HOH . 
H 6 HOH A 86 686 23 HOH HOH . 
H 6 HOH A 87 687 43 HOH HOH . 
H 6 HOH A 88 688 162 HOH HOH . 
H 6 HOH A 89 689 82 HOH HOH . 
H 6 HOH A 90 690 108 HOH HOH . 
H 6 HOH A 91 691 47 HOH HOH . 
H 6 HOH A 92 692 154 HOH HOH . 
H 6 HOH A 93 693 167 HOH HOH . 
H 6 HOH A 94 694 134 HOH HOH . 
H 6 HOH A 95 695 34 HOH HOH . 
H 6 HOH A 96 696 138 HOH HOH . 
H 6 HOH A 97 697 56 HOH HOH . 
H 6 HOH A 98 698 116 HOH HOH . 
H 6 HOH A 99 699 38 HOH HOH . 
H 6 HOH A 100 700 91 HOH HOH . 
H 6 HOH A 101 701 64 HOH HOH . 
H 6 HOH A 102 702 192 HOH HOH . 
H 6 HOH A 103 703 122 HOH HOH . 
H 6 HOH A 104 704 183 HOH HOH . 
H 6 HOH A 105 705 166 HOH HOH . 
H 6 HOH A 106 706 95 HOH HOH . 
H 6 HOH A 107 707 107 HOH HOH . 
H 6 HOH A 108 708 69 HOH HOH . 
H 6 HOH A 109 709 49 HOH HOH . 
H 6 HOH A 110 710 131 HOH HOH . 
H 6 HOH A 111 711 53 HOH HOH . 
H 6 HOH A 112 712 44 HOH HOH . 
H 6 HOH A 113 713 173 HOH HOH . 
H 6 HOH A 114 714 179 HOH HOH . 
H 6 HOH A 115 715 83 HOH HOH . 
H 6 HOH A 116 716 185 HOH HOH . 
H 6 HOH A 117 717 141 HOH HOH . 
H 6 HOH A 118 718 175 HOH HOH . 
H 6 HOH A 119 719 191 HOH HOH . 
H 6 HOH A 120 720 150 HOH HOH . 
H 6 HOH A 121 721 77 HOH HOH . 
H 6 HOH A 122 722 186 HOH HOH . 
H 6 HOH A 123 723 120 HOH HOH . 
H 6 HOH A 124 724 126 HOH HOH . 
H 6 HOH A 125 725 98 HOH HOH . 
H 6 HOH A 126 726 164 HOH HOH . 
H 6 HOH A 127 727 142 HOH HOH . 
H 6 HOH A 128 728 79 HOH HOH . 
H 6 HOH A 129 729 172 HOH HOH . 
H 6 HOH A 130 730 193 HOH HOH . 
H 6 HOH A 131 731 168 HOH HOH . 
H 6 HOH A 132 732 92 HOH HOH . 
H 6 HOH A 133 733 133 HOH HOH . 
H 6 HOH A 134 734 189 HOH HOH . 
H 6 HOH A 135 735 161 HOH HOH . 
H 6 HOH A 136 736 188 HOH HOH . 
H 6 HOH A 137 737 174 HOH HOH . 
H 6 HOH A 138 738 196 HOH HOH . 
H 6 HOH A 139 739 190 HOH HOH . 
I 6 HOH B 1 201 158 HOH HOH . 
I 6 HOH B 2 202 80 HOH HOH . 
I 6 HOH B 3 203 117 HOH HOH . 
I 6 HOH B 4 204 181 HOH HOH . 
I 6 HOH B 5 205 87 HOH HOH . 
I 6 HOH B 6 206 163 HOH HOH . 
I 6 HOH B 7 207 99 HOH HOH . 
I 6 HOH B 8 208 15 HOH HOH . 
I 6 HOH B 9 209 40 HOH HOH . 
I 6 HOH B 10 210 68 HOH HOH . 
I 6 HOH B 11 211 78 HOH HOH . 
I 6 HOH B 12 212 4 HOH HOH . 
I 6 HOH B 13 213 55 HOH HOH . 
I 6 HOH B 14 214 71 HOH HOH . 
I 6 HOH B 15 215 46 HOH HOH . 
I 6 HOH B 16 216 89 HOH HOH . 
I 6 HOH B 17 217 54 HOH HOH . 
I 6 HOH B 18 218 7 HOH HOH . 
I 6 HOH B 19 219 39 HOH HOH . 
I 6 HOH B 20 220 106 HOH HOH . 
I 6 HOH B 21 221 132 HOH HOH . 
I 6 HOH B 22 222 63 HOH HOH . 
I 6 HOH B 23 223 114 HOH HOH . 
I 6 HOH B 24 224 152 HOH HOH . 
I 6 HOH B 25 225 102 HOH HOH . 
I 6 HOH B 26 226 96 HOH HOH . 
I 6 HOH B 27 227 94 HOH HOH . 
I 6 HOH B 28 228 97 HOH HOH . 
I 6 HOH B 29 229 9 HOH HOH . 
I 6 HOH B 30 230 165 HOH HOH . 
I 6 HOH B 31 231 67 HOH HOH . 
I 6 HOH B 32 232 73 HOH HOH . 
I 6 HOH B 33 233 58 HOH HOH . 
I 6 HOH B 34 234 119 HOH HOH . 
I 6 HOH B 35 235 101 HOH HOH . 
I 6 HOH B 36 236 151 HOH HOH . 
I 6 HOH B 37 237 127 HOH HOH . 
I 6 HOH B 38 238 86 HOH HOH . 
I 6 HOH B 39 239 76 HOH HOH . 
I 6 HOH B 40 240 147 HOH HOH . 
I 6 HOH B 41 241 103 HOH HOH . 
I 6 HOH B 42 242 159 HOH HOH . 
I 6 HOH B 43 243 144 HOH HOH . 
I 6 HOH B 44 244 70 HOH HOH . 
I 6 HOH B 45 245 129 HOH HOH . 
I 6 HOH B 46 246 115 HOH HOH . 
I 6 HOH B 47 247 118 HOH HOH . 
I 6 HOH B 48 248 145 HOH HOH . 
I 6 HOH B 49 249 160 HOH HOH . 
I 6 HOH B 50 250 90 HOH HOH . 
I 6 HOH B 51 251 111 HOH HOH . 
I 6 HOH B 52 252 195 HOH HOH . 
I 6 HOH B 53 253 194 HOH HOH . 
I 6 HOH B 54 254 178 HOH HOH . 
I 6 HOH B 55 255 177 HOH HOH . 
I 6 HOH B 56 256 182 HOH HOH . 
I 6 HOH B 57 257 180 HOH HOH . 
I 6 HOH B 58 258 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -10.12 4.254 -12.098 1 35.51 ? C1 EDO 502 A 1 
HETATM 2 O O1 EDO . . . D 4 -9.377 5.475 -12.118 1 34.13 ? O1 EDO 502 A 1 
HETATM 3 C C2 EDO . . . D 4 -10.036 3.593 -13.466 1 47.75 ? C2 EDO 502 A 1 
HETATM 4 O O2 EDO . . . D 4 -10.49 2.243 -13.352 1 46 ? O2 EDO 502 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#