data_5L8N # _model_server_result.job_id -P5taTTkjo_sz1beF5m7SQ _model_server_result.datetime_utc '2024-11-06 18:32:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 5L8N # _exptl.entry_id 5L8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.204 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6-dimethyl-1~{H}-benzimidazol-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.27 _cell.angle_gamma 90 _cell.entry_id 5L8N _cell.length_a 47.25 _cell.length_b 64.43 _cell.length_c 59.02 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,K 1 1 B,F,G,H,L 2 1 C,I,J,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N # _chem_comp.formula 'C9 H11 N3' _chem_comp.formula_weight 161.204 _chem_comp.id 6RQ _chem_comp.mon_nstd_flag . _chem_comp.name 5,6-dimethyl-1~{H}-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6RQ sing 1 n n C2 C3 6RQ doub 2 n y C2 C7 6RQ sing 3 n y C3 C4 6RQ sing 4 n y C8 C7 6RQ sing 5 n n C7 C6 6RQ doub 6 n y C4 N10 6RQ sing 7 n y C4 C5 6RQ doub 8 n y C6 C5 6RQ sing 9 n y N10 C11 6RQ doub 10 n y C5 N9 6RQ sing 11 n y C11 N9 6RQ sing 12 n y C11 N12 6RQ sing 13 n n C6 H1 6RQ sing 14 n n C8 H2 6RQ sing 15 n n C8 H3 6RQ sing 16 n n C8 H4 6RQ sing 17 n n C1 H5 6RQ sing 18 n n C1 H6 6RQ sing 19 n n C1 H7 6RQ sing 20 n n C3 H8 6RQ sing 21 n n N9 H9 6RQ sing 22 n n N12 H11 6RQ sing 23 n n N12 H12 6RQ sing 24 n n # _atom_sites.entry_id 5L8N _atom_sites.fract_transf_matrix[1][1] 0.021164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 6RQ A 1 1001 1001 6RQ 882 . E 3 PEG A 1 1002 2001 PEG PEG . F 3 PEG B 1 2001 2001 PEG PEG . G 3 PEG B 1 2002 2002 PEG PEG . H 4 P33 B 1 2003 2003 P33 P33 . I 2 6RQ C 1 1001 1001 6RQ 882 . J 3 PEG C 1 1002 2001 PEG PEG . K 5 HOH A 1 1101 20 HOH HOH . K 5 HOH A 2 1102 13 HOH HOH . K 5 HOH A 3 1103 38 HOH HOH . K 5 HOH A 4 1104 22 HOH HOH . K 5 HOH A 5 1105 44 HOH HOH . K 5 HOH A 6 1106 9 HOH HOH . K 5 HOH A 7 1107 23 HOH HOH . K 5 HOH A 8 1108 41 HOH HOH . K 5 HOH A 9 1109 11 HOH HOH . K 5 HOH A 10 1110 37 HOH HOH . K 5 HOH A 11 1111 36 HOH HOH . K 5 HOH A 12 1112 5 HOH HOH . K 5 HOH A 13 1113 10 HOH HOH . K 5 HOH A 14 1114 18 HOH HOH . K 5 HOH A 15 1115 16 HOH HOH . K 5 HOH A 16 1116 17 HOH HOH . L 5 HOH B 1 2101 33 HOH HOH . L 5 HOH B 2 2102 19 HOH HOH . L 5 HOH B 3 2103 2 HOH HOH . L 5 HOH B 4 2104 30 HOH HOH . L 5 HOH B 5 2105 25 HOH HOH . L 5 HOH B 6 2106 24 HOH HOH . L 5 HOH B 7 2107 31 HOH HOH . L 5 HOH B 8 2108 7 HOH HOH . L 5 HOH B 9 2109 39 HOH HOH . L 5 HOH B 10 2110 28 HOH HOH . L 5 HOH B 11 2111 4 HOH HOH . L 5 HOH B 12 2112 15 HOH HOH . L 5 HOH B 13 2113 6 HOH HOH . L 5 HOH B 14 2114 26 HOH HOH . L 5 HOH B 15 2115 27 HOH HOH . L 5 HOH B 16 2116 45 HOH HOH . L 5 HOH B 17 2117 14 HOH HOH . L 5 HOH B 18 2118 42 HOH HOH . L 5 HOH B 19 2119 34 HOH HOH . L 5 HOH B 20 2120 1 HOH HOH . L 5 HOH B 21 2121 43 HOH HOH . L 5 HOH B 22 2122 3 HOH HOH . L 5 HOH B 23 2123 21 HOH HOH . L 5 HOH B 24 2124 40 HOH HOH . L 5 HOH B 25 2125 12 HOH HOH . L 5 HOH B 26 2126 35 HOH HOH . M 5 HOH C 1 1101 29 HOH HOH . M 5 HOH C 2 1102 32 HOH HOH . M 5 HOH C 3 1103 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6RQ . . . D 2 59.818 -5.895 57.117 1 51.58 ? C4 6RQ 1001 A 1 HETATM 2 C C5 6RQ . . . D 2 58.933 -6.467 58.028 1 52.48 ? C5 6RQ 1001 A 1 HETATM 3 C C6 6RQ . . . D 2 57.944 -7.354 57.632 1 53.48 ? C6 6RQ 1001 A 1 HETATM 4 C C7 6RQ . . . D 2 57.85 -7.671 56.283 1 54.34 ? C7 6RQ 1001 A 1 HETATM 5 C C8 6RQ . . . D 2 56.784 -8.632 55.825 1 55.03 ? C8 6RQ 1001 A 1 HETATM 6 C C11 6RQ . . . D 2 60.357 -5.115 59.066 1 49.67 ? C11 6RQ 1001 A 1 HETATM 7 C C2 6RQ . . . D 2 58.75 -7.095 55.343 1 54.27 ? C2 6RQ 1001 A 1 HETATM 8 C C1 6RQ . . . D 2 58.647 -7.437 53.875 1 54.24 ? C1 6RQ 1001 A 1 HETATM 9 C C3 6RQ . . . D 2 59.726 -6.205 55.764 1 52.49 ? C3 6RQ 1001 A 1 HETATM 10 N N9 6RQ . . . D 2 59.304 -5.947 59.255 1 51.36 ? N9 6RQ 1001 A 1 HETATM 11 N N10 6RQ . . . D 2 60.692 -5.054 57.791 1 50.7 ? N10 6RQ 1001 A 1 HETATM 12 N N12 6RQ . . . D 2 60.996 -4.417 60.128 1 48.95 ? N12 6RQ 1001 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #