data_5L8N
#
_model_server_result.job_id            N67vymZfX0jPmh5cZo_p3g 
_model_server_result.datetime_utc      '2024-11-06 18:39:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l8n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2002}' 
#
_entry.id    5L8N 
#
_exptl.entry_id    5L8N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.27 
_cell.angle_gamma         90 
_cell.entry_id            5L8N 
_cell.length_a            47.25 
_cell.length_b            64.43 
_cell.length_c            59.02 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L8N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,K 1 1 
B,F,G,H,L 2 1 
C,I,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 J N N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 299 n n 
C1 C2 PEG sing 300 n n 
C1 H11 PEG sing 301 n n 
C1 H12 PEG sing 302 n n 
O1 HO1 PEG sing 303 n n 
C2 O2 PEG sing 304 n n 
C2 H21 PEG sing 305 n n 
C2 H22 PEG sing 306 n n 
O2 C3 PEG sing 307 n n 
C3 C4 PEG sing 308 n n 
C3 H31 PEG sing 309 n n 
C3 H32 PEG sing 310 n n 
C4 O4 PEG sing 311 n n 
C4 H41 PEG sing 312 n n 
C4 H42 PEG sing 313 n n 
O4 HO4 PEG sing 314 n n 
#
_atom_sites.entry_id                     5L8N 
_atom_sites.fract_transf_matrix[1][1]    0.021164 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00158 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015521 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016991 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 6RQ A 1 1001 1001 6RQ 882 . 
E 3 PEG A 1 1002 2001 PEG PEG . 
F 3 PEG B 1 2001 2001 PEG PEG . 
G 3 PEG B 1 2002 2002 PEG PEG . 
H 4 P33 B 1 2003 2003 P33 P33 . 
I 2 6RQ C 1 1001 1001 6RQ 882 . 
J 3 PEG C 1 1002 2001 PEG PEG . 
K 5 HOH A 1 1101 20 HOH HOH . 
K 5 HOH A 2 1102 13 HOH HOH . 
K 5 HOH A 3 1103 38 HOH HOH . 
K 5 HOH A 4 1104 22 HOH HOH . 
K 5 HOH A 5 1105 44 HOH HOH . 
K 5 HOH A 6 1106 9 HOH HOH . 
K 5 HOH A 7 1107 23 HOH HOH . 
K 5 HOH A 8 1108 41 HOH HOH . 
K 5 HOH A 9 1109 11 HOH HOH . 
K 5 HOH A 10 1110 37 HOH HOH . 
K 5 HOH A 11 1111 36 HOH HOH . 
K 5 HOH A 12 1112 5 HOH HOH . 
K 5 HOH A 13 1113 10 HOH HOH . 
K 5 HOH A 14 1114 18 HOH HOH . 
K 5 HOH A 15 1115 16 HOH HOH . 
K 5 HOH A 16 1116 17 HOH HOH . 
L 5 HOH B 1 2101 33 HOH HOH . 
L 5 HOH B 2 2102 19 HOH HOH . 
L 5 HOH B 3 2103 2 HOH HOH . 
L 5 HOH B 4 2104 30 HOH HOH . 
L 5 HOH B 5 2105 25 HOH HOH . 
L 5 HOH B 6 2106 24 HOH HOH . 
L 5 HOH B 7 2107 31 HOH HOH . 
L 5 HOH B 8 2108 7 HOH HOH . 
L 5 HOH B 9 2109 39 HOH HOH . 
L 5 HOH B 10 2110 28 HOH HOH . 
L 5 HOH B 11 2111 4 HOH HOH . 
L 5 HOH B 12 2112 15 HOH HOH . 
L 5 HOH B 13 2113 6 HOH HOH . 
L 5 HOH B 14 2114 26 HOH HOH . 
L 5 HOH B 15 2115 27 HOH HOH . 
L 5 HOH B 16 2116 45 HOH HOH . 
L 5 HOH B 17 2117 14 HOH HOH . 
L 5 HOH B 18 2118 42 HOH HOH . 
L 5 HOH B 19 2119 34 HOH HOH . 
L 5 HOH B 20 2120 1 HOH HOH . 
L 5 HOH B 21 2121 43 HOH HOH . 
L 5 HOH B 22 2122 3 HOH HOH . 
L 5 HOH B 23 2123 21 HOH HOH . 
L 5 HOH B 24 2124 40 HOH HOH . 
L 5 HOH B 25 2125 12 HOH HOH . 
L 5 HOH B 26 2126 35 HOH HOH . 
M 5 HOH C 1 1101 29 HOH HOH . 
M 5 HOH C 2 1102 32 HOH HOH . 
M 5 HOH C 3 1103 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . G 3 77.042 9.337 66.496 1 62.43 ? C1 PEG 2002 B 1 
HETATM 2 O O1 PEG . . . G 3 78.387 9.241 66.013 1 62.31 ? O1 PEG 2002 B 1 
HETATM 3 C C2 PEG . . . G 3 76.367 10.575 65.921 1 63.14 ? C2 PEG 2002 B 1 
HETATM 4 O O2 PEG . . . G 3 75.718 10.245 64.689 1 64.55 ? O2 PEG 2002 B 1 
HETATM 5 C C3 PEG . . . G 3 76.143 11.053 63.587 1 63.6 ? C3 PEG 2002 B 1 
HETATM 6 C C4 PEG . . . G 3 75.332 10.722 62.338 1 62.8 ? C4 PEG 2002 B 1 
HETATM 7 O O4 PEG . . . G 3 76.165 10.098 61.354 1 62.4 ? O4 PEG 2002 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           7 
#