data_5L8O # _model_server_result.job_id fd6VaGW6b8EHWRDM5iM5YQ _model_server_result.datetime_utc '2024-11-26 23:35:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 5L8O # _exptl.entry_id 5L8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.571 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.02 _cell.angle_gamma 90 _cell.entry_id 5L8O _cell.length_a 46.86 _cell.length_b 64.72 _cell.length_c 59.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,F,H 2 1 C,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H40 O5' _chem_comp.formula_weight 408.571 _chem_comp.id CHD _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CHD sing 70 n n C1 C10 CHD sing 71 n n C1 H11 CHD sing 72 n n C1 H12A CHD sing 73 n n C2 C3 CHD sing 74 n n C2 H21 CHD sing 75 n n C2 H22 CHD sing 76 n n C3 O3 CHD sing 77 n n C3 C4 CHD sing 78 n n C3 H3 CHD sing 79 n n O3 HO3 CHD sing 80 n n C4 C5 CHD sing 81 n n C4 H41 CHD sing 82 n n C4 H42 CHD sing 83 n n C5 C6 CHD sing 84 n n C5 C10 CHD sing 85 n n C5 H5 CHD sing 86 n n C6 C7 CHD sing 87 n n C6 H61 CHD sing 88 n n C6 H62 CHD sing 89 n n C7 O7 CHD sing 90 n n C7 C8 CHD sing 91 n n C7 H7 CHD sing 92 n n O7 HO7 CHD sing 93 n n C8 C9 CHD sing 94 n n C8 C14 CHD sing 95 n n C8 H8 CHD sing 96 n n C9 C10 CHD sing 97 n n C9 C11 CHD sing 98 n n C9 H9 CHD sing 99 n n C10 C19 CHD sing 100 n n C11 C12 CHD sing 101 n n C11 H111 CHD sing 102 n n C11 H112 CHD sing 103 n n C12 O12 CHD sing 104 n n C12 C13 CHD sing 105 n n C12 H12 CHD sing 106 n n O12 HO12 CHD sing 107 n n C13 C14 CHD sing 108 n n C13 C17 CHD sing 109 n n C13 C18 CHD sing 110 n n C14 C15 CHD sing 111 n n C14 H14 CHD sing 112 n n C15 C16 CHD sing 113 n n C15 H151 CHD sing 114 n n C15 H152 CHD sing 115 n n C16 C17 CHD sing 116 n n C16 H161 CHD sing 117 n n C16 H162 CHD sing 118 n n C17 C20 CHD sing 119 n n C17 H17 CHD sing 120 n n C18 H181 CHD sing 121 n n C18 H182 CHD sing 122 n n C18 H183 CHD sing 123 n n C19 H191 CHD sing 124 n n C19 H192 CHD sing 125 n n C19 H193 CHD sing 126 n n C20 C21 CHD sing 127 n n C20 C22 CHD sing 128 n n C20 H20 CHD sing 129 n n C21 H211 CHD sing 130 n n C21 H212 CHD sing 131 n n C21 H213 CHD sing 132 n n C22 C23 CHD sing 133 n n C22 H221 CHD sing 134 n n C22 H222 CHD sing 135 n n C23 C24 CHD sing 136 n n C23 H231 CHD sing 137 n n C23 H232 CHD sing 138 n n O25 C24 CHD doub 139 n n C24 O26 CHD sing 140 n n O26 H26 CHD sing 141 n n # _atom_sites.entry_id 5L8O _atom_sites.fract_transf_matrix[1][1] 0.02134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PEG A 1 2001 2001 PEG PEG . E 3 CHD B 1 1001 1001 CHD CHD . F 2 PEG B 1 1002 2001 PEG PEG . G 4 HOH A 1 2101 9 HOH HOH . G 4 HOH A 2 2102 17 HOH HOH . G 4 HOH A 3 2103 30 HOH HOH . G 4 HOH A 4 2104 7 HOH HOH . G 4 HOH A 5 2105 10 HOH HOH . G 4 HOH A 6 2106 31 HOH HOH . G 4 HOH A 7 2107 47 HOH HOH . G 4 HOH A 8 2108 35 HOH HOH . G 4 HOH A 9 2109 45 HOH HOH . G 4 HOH A 10 2110 48 HOH HOH . G 4 HOH A 11 2111 46 HOH HOH . G 4 HOH A 12 2112 39 HOH HOH . G 4 HOH A 13 2113 18 HOH HOH . G 4 HOH A 14 2114 44 HOH HOH . G 4 HOH A 15 2115 33 HOH HOH . G 4 HOH A 16 2116 36 HOH HOH . G 4 HOH A 17 2117 32 HOH HOH . H 4 HOH B 1 1101 1 HOH HOH . H 4 HOH B 2 1102 13 HOH HOH . H 4 HOH B 3 1103 50 HOH HOH . H 4 HOH B 4 1104 2 HOH HOH . H 4 HOH B 5 1105 5 HOH HOH . H 4 HOH B 6 1106 25 HOH HOH . H 4 HOH B 7 1107 23 HOH HOH . H 4 HOH B 8 1108 26 HOH HOH . H 4 HOH B 9 1109 43 HOH HOH . H 4 HOH B 10 1110 52 HOH HOH . H 4 HOH B 11 1111 28 HOH HOH . H 4 HOH B 12 1112 24 HOH HOH . H 4 HOH B 13 1113 14 HOH HOH . H 4 HOH B 14 1114 4 HOH HOH . H 4 HOH B 15 1115 12 HOH HOH . H 4 HOH B 16 1116 49 HOH HOH . H 4 HOH B 17 1117 11 HOH HOH . H 4 HOH B 18 1118 6 HOH HOH . H 4 HOH B 19 1119 51 HOH HOH . H 4 HOH B 20 1120 3 HOH HOH . H 4 HOH B 21 1121 40 HOH HOH . H 4 HOH B 22 1122 37 HOH HOH . I 4 HOH C 1 201 34 HOH HOH . I 4 HOH C 2 202 15 HOH HOH . I 4 HOH C 3 203 20 HOH HOH . I 4 HOH C 4 204 42 HOH HOH . I 4 HOH C 5 205 16 HOH HOH . I 4 HOH C 6 206 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CHD . . . E 3 65.706 6.563 73.833 1 54.46 ? C1 CHD 1001 B 1 HETATM 2 C C2 CHD . . . E 3 67.162 6.352 73.463 1 52.85 ? C2 CHD 1001 B 1 HETATM 3 C C3 CHD . . . E 3 67.275 5.933 72.008 1 52.57 ? C3 CHD 1001 B 1 HETATM 4 O O3 CHD . . . E 3 68.646 5.639 71.753 1 52.72 ? O3 CHD 1001 B 1 HETATM 5 C C4 CHD . . . E 3 66.418 4.701 71.708 1 52.88 ? C4 CHD 1001 B 1 HETATM 6 C C5 CHD . . . E 3 64.967 4.825 72.204 1 54.02 ? C5 CHD 1001 B 1 HETATM 7 C C6 CHD . . . E 3 64.213 3.51 71.928 1 54.41 ? C6 CHD 1001 B 1 HETATM 8 C C7 CHD . . . E 3 64.334 2.406 72.991 1 54.88 ? C7 CHD 1001 B 1 HETATM 9 O O7 CHD . . . E 3 65.543 1.678 72.747 1 54.39 ? O7 CHD 1001 B 1 HETATM 10 C C8 CHD . . . E 3 64.287 2.92 74.435 1 55.97 ? C8 CHD 1001 B 1 HETATM 11 C C9 CHD . . . E 3 65.241 4.121 74.595 1 56.18 ? C9 CHD 1001 B 1 HETATM 12 C C10 CHD . . . E 3 64.851 5.301 73.664 1 54.8 ? C10 CHD 1001 B 1 HETATM 13 C C11 CHD . . . E 3 65.487 4.531 76.058 1 56.75 ? C11 CHD 1001 B 1 HETATM 14 C C12 CHD . . . E 3 65.687 3.388 77.059 1 57.74 ? C12 CHD 1001 B 1 HETATM 15 O O12 CHD . . . E 3 67.02 2.863 76.915 1 57.14 ? O12 CHD 1001 B 1 HETATM 16 C C13 CHD . . . E 3 64.622 2.298 76.915 1 58.79 ? C13 CHD 1001 B 1 HETATM 17 C C14 CHD . . . E 3 64.63 1.836 75.459 1 57.74 ? C14 CHD 1001 B 1 HETATM 18 C C15 CHD . . . E 3 63.764 0.587 75.449 1 59.19 ? C15 CHD 1001 B 1 HETATM 19 C C16 CHD . . . E 3 64.054 -0.047 76.809 1 60.07 ? C16 CHD 1001 B 1 HETATM 20 C C17 CHD . . . E 3 64.892 0.959 77.618 1 60.64 ? C17 CHD 1001 B 1 HETATM 21 C C18 CHD . . . E 3 63.26 2.865 77.368 1 59.13 ? C18 CHD 1001 B 1 HETATM 22 C C19 CHD . . . E 3 63.422 5.808 73.911 1 55.18 ? C19 CHD 1001 B 1 HETATM 23 C C20 CHD . . . E 3 64.652 0.824 79.139 1 62.26 ? C20 CHD 1001 B 1 HETATM 24 C C21 CHD . . . E 3 65.432 1.852 79.973 1 61.17 ? C21 CHD 1001 B 1 HETATM 25 C C22 CHD . . . E 3 64.932 -0.639 79.532 1 64.76 ? C22 CHD 1001 B 1 HETATM 26 C C23 CHD . . . E 3 65.421 -0.913 80.95 1 66.9 ? C23 CHD 1001 B 1 HETATM 27 O O25 CHD . . . E 3 64.498 -3.054 81.396 1 70.84 ? O25 CHD 1001 B 1 HETATM 28 C C24 CHD . . . E 3 65.528 -2.408 81.096 1 69.21 ? C24 CHD 1001 B 1 HETATM 29 O O26 CHD . . . E 3 66.642 -2.933 80.89 1 70.14 ? O26 CHD 1001 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #