data_5L8O # _model_server_result.job_id 3LoV-_stYKFKX9d_HilT2g _model_server_result.datetime_utc '2024-11-30 07:10:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 5L8O # _exptl.entry_id 5L8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.02 _cell.angle_gamma 90 _cell.entry_id 5L8O _cell.length_a 46.86 _cell.length_b 64.72 _cell.length_c 59.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,F,H 2 1 C,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 296 n n C1 C2 PEG sing 297 n n C1 H11 PEG sing 298 n n C1 H12 PEG sing 299 n n O1 HO1 PEG sing 300 n n C2 O2 PEG sing 301 n n C2 H21 PEG sing 302 n n C2 H22 PEG sing 303 n n O2 C3 PEG sing 304 n n C3 C4 PEG sing 305 n n C3 H31 PEG sing 306 n n C3 H32 PEG sing 307 n n C4 O4 PEG sing 308 n n C4 H41 PEG sing 309 n n C4 H42 PEG sing 310 n n O4 HO4 PEG sing 311 n n # _atom_sites.entry_id 5L8O _atom_sites.fract_transf_matrix[1][1] 0.02134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PEG A 1 2001 2001 PEG PEG . E 3 CHD B 1 1001 1001 CHD CHD . F 2 PEG B 1 1002 2001 PEG PEG . G 4 HOH A 1 2101 9 HOH HOH . G 4 HOH A 2 2102 17 HOH HOH . G 4 HOH A 3 2103 30 HOH HOH . G 4 HOH A 4 2104 7 HOH HOH . G 4 HOH A 5 2105 10 HOH HOH . G 4 HOH A 6 2106 31 HOH HOH . G 4 HOH A 7 2107 47 HOH HOH . G 4 HOH A 8 2108 35 HOH HOH . G 4 HOH A 9 2109 45 HOH HOH . G 4 HOH A 10 2110 48 HOH HOH . G 4 HOH A 11 2111 46 HOH HOH . G 4 HOH A 12 2112 39 HOH HOH . G 4 HOH A 13 2113 18 HOH HOH . G 4 HOH A 14 2114 44 HOH HOH . G 4 HOH A 15 2115 33 HOH HOH . G 4 HOH A 16 2116 36 HOH HOH . G 4 HOH A 17 2117 32 HOH HOH . H 4 HOH B 1 1101 1 HOH HOH . H 4 HOH B 2 1102 13 HOH HOH . H 4 HOH B 3 1103 50 HOH HOH . H 4 HOH B 4 1104 2 HOH HOH . H 4 HOH B 5 1105 5 HOH HOH . H 4 HOH B 6 1106 25 HOH HOH . H 4 HOH B 7 1107 23 HOH HOH . H 4 HOH B 8 1108 26 HOH HOH . H 4 HOH B 9 1109 43 HOH HOH . H 4 HOH B 10 1110 52 HOH HOH . H 4 HOH B 11 1111 28 HOH HOH . H 4 HOH B 12 1112 24 HOH HOH . H 4 HOH B 13 1113 14 HOH HOH . H 4 HOH B 14 1114 4 HOH HOH . H 4 HOH B 15 1115 12 HOH HOH . H 4 HOH B 16 1116 49 HOH HOH . H 4 HOH B 17 1117 11 HOH HOH . H 4 HOH B 18 1118 6 HOH HOH . H 4 HOH B 19 1119 51 HOH HOH . H 4 HOH B 20 1120 3 HOH HOH . H 4 HOH B 21 1121 40 HOH HOH . H 4 HOH B 22 1122 37 HOH HOH . I 4 HOH C 1 201 34 HOH HOH . I 4 HOH C 2 202 15 HOH HOH . I 4 HOH C 3 203 20 HOH HOH . I 4 HOH C 4 204 42 HOH HOH . I 4 HOH C 5 205 16 HOH HOH . I 4 HOH C 6 206 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 2 58.355 6.137 81.812 1 62.83 ? C1 PEG 1002 B 1 HETATM 2 O O1 PEG . . . F 2 58.158 5.867 83.205 1 63.64 ? O1 PEG 1002 B 1 HETATM 3 C C2 PEG . . . F 2 59.763 5.719 81.398 1 62.18 ? C2 PEG 1002 B 1 HETATM 4 O O2 PEG . . . F 2 59.944 4.324 81.655 1 61.23 ? O2 PEG 1002 B 1 HETATM 5 C C3 PEG . . . F 2 61.309 3.906 81.584 1 59.81 ? C3 PEG 1002 B 1 HETATM 6 C C4 PEG . . . F 2 61.364 2.411 81.291 1 58.46 ? C4 PEG 1002 B 1 HETATM 7 O O4 PEG . . . F 2 61.611 1.669 82.491 1 58.63 ? O4 PEG 1002 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #