data_5L8T # _model_server_result.job_id icniaa3ewrKGujKuoiSUrA _model_server_result.datetime_utc '2024-11-04 22:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5L8T # _exptl.entry_id 5L8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 240.322 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(3~{R})-1,1-bis(oxidanylidene)thian-3-yl]-2-methyl-pyridin-3-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L8T _cell.length_a 80.827 _cell.length_b 96.382 _cell.length_c 57.663 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H16 N2 O2 S' _chem_comp.formula_weight 240.322 _chem_comp.id 6RR _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(3~{R})-1,1-bis(oxidanylidene)thian-3-yl]-2-methyl-pyridin-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 S09 6RR doub 1 n n S09 C08 6RR sing 2 n n S09 C12 6RR sing 3 n n S09 O10 6RR doub 4 n n C08 C07 6RR sing 5 n n C12 C05 6RR sing 6 n n C07 C06 6RR sing 7 n n C05 N04 6RR sing 8 n n C05 C06 6RR sing 9 n n C13 C14 6RR doub 10 n y C13 C03 6RR sing 11 n y C14 C15 6RR sing 12 n y N04 C03 6RR sing 13 n n C15 N16 6RR doub 14 n y C03 C02 6RR doub 15 n y N16 C02 6RR sing 16 n y C02 C01 6RR sing 17 n n C15 H1 6RR sing 18 n n C14 H2 6RR sing 19 n n C12 H3 6RR sing 20 n n C12 H4 6RR sing 21 n n C01 H5 6RR sing 22 n n C01 H6 6RR sing 23 n n C01 H7 6RR sing 24 n n N04 H8 6RR sing 25 n n C05 H9 6RR sing 26 n n C06 H10 6RR sing 27 n n C07 H11 6RR sing 28 n n C08 H12 6RR sing 29 n n C08 H13 6RR sing 30 n n C13 H14 6RR sing 31 n n C06 H15 6RR sing 32 n n C07 H16 6RR sing 33 n n # _atom_sites.entry_id 5L8T _atom_sites.fract_transf_matrix[1][1] 0.012372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6RR A 1 2001 1 6RR 708 . C 3 HOH A 1 2101 89 HOH HOH . C 3 HOH A 2 2102 52 HOH HOH . C 3 HOH A 3 2103 18 HOH HOH . C 3 HOH A 4 2104 79 HOH HOH . C 3 HOH A 5 2105 36 HOH HOH . C 3 HOH A 6 2106 65 HOH HOH . C 3 HOH A 7 2107 43 HOH HOH . C 3 HOH A 8 2108 45 HOH HOH . C 3 HOH A 9 2109 53 HOH HOH . C 3 HOH A 10 2110 15 HOH HOH . C 3 HOH A 11 2111 6 HOH HOH . C 3 HOH A 12 2112 27 HOH HOH . C 3 HOH A 13 2113 14 HOH HOH . C 3 HOH A 14 2114 20 HOH HOH . C 3 HOH A 15 2115 77 HOH HOH . C 3 HOH A 16 2116 42 HOH HOH . C 3 HOH A 17 2117 30 HOH HOH . C 3 HOH A 18 2118 23 HOH HOH . C 3 HOH A 19 2119 54 HOH HOH . C 3 HOH A 20 2120 10 HOH HOH . C 3 HOH A 21 2121 17 HOH HOH . C 3 HOH A 22 2122 66 HOH HOH . C 3 HOH A 23 2123 19 HOH HOH . C 3 HOH A 24 2124 47 HOH HOH . C 3 HOH A 25 2125 44 HOH HOH . C 3 HOH A 26 2126 3 HOH HOH . C 3 HOH A 27 2127 39 HOH HOH . C 3 HOH A 28 2128 21 HOH HOH . C 3 HOH A 29 2129 86 HOH HOH . C 3 HOH A 30 2130 29 HOH HOH . C 3 HOH A 31 2131 12 HOH HOH . C 3 HOH A 32 2132 25 HOH HOH . C 3 HOH A 33 2133 28 HOH HOH . C 3 HOH A 34 2134 32 HOH HOH . C 3 HOH A 35 2135 49 HOH HOH . C 3 HOH A 36 2136 41 HOH HOH . C 3 HOH A 37 2137 2 HOH HOH . C 3 HOH A 38 2138 24 HOH HOH . C 3 HOH A 39 2139 9 HOH HOH . C 3 HOH A 40 2140 8 HOH HOH . C 3 HOH A 41 2141 35 HOH HOH . C 3 HOH A 42 2142 1 HOH HOH . C 3 HOH A 43 2143 69 HOH HOH . C 3 HOH A 44 2144 34 HOH HOH . C 3 HOH A 45 2145 26 HOH HOH . C 3 HOH A 46 2146 4 HOH HOH . C 3 HOH A 47 2147 7 HOH HOH . C 3 HOH A 48 2148 94 HOH HOH . C 3 HOH A 49 2149 16 HOH HOH . C 3 HOH A 50 2150 57 HOH HOH . C 3 HOH A 51 2151 87 HOH HOH . C 3 HOH A 52 2152 31 HOH HOH . C 3 HOH A 53 2153 71 HOH HOH . C 3 HOH A 54 2154 13 HOH HOH . C 3 HOH A 55 2155 50 HOH HOH . C 3 HOH A 56 2156 83 HOH HOH . C 3 HOH A 57 2157 5 HOH HOH . C 3 HOH A 58 2158 70 HOH HOH . C 3 HOH A 59 2159 40 HOH HOH . C 3 HOH A 60 2160 33 HOH HOH . C 3 HOH A 61 2161 11 HOH HOH . C 3 HOH A 62 2162 102 HOH HOH . C 3 HOH A 63 2163 80 HOH HOH . C 3 HOH A 64 2164 96 HOH HOH . C 3 HOH A 65 2165 55 HOH HOH . C 3 HOH A 66 2166 74 HOH HOH . C 3 HOH A 67 2167 61 HOH HOH . C 3 HOH A 68 2168 73 HOH HOH . C 3 HOH A 69 2169 64 HOH HOH . C 3 HOH A 70 2170 93 HOH HOH . C 3 HOH A 71 2171 51 HOH HOH . C 3 HOH A 72 2172 62 HOH HOH . C 3 HOH A 73 2173 72 HOH HOH . C 3 HOH A 74 2174 85 HOH HOH . C 3 HOH A 75 2175 38 HOH HOH . C 3 HOH A 76 2176 99 HOH HOH . C 3 HOH A 77 2177 78 HOH HOH . C 3 HOH A 78 2178 92 HOH HOH . C 3 HOH A 79 2179 100 HOH HOH . C 3 HOH A 80 2180 63 HOH HOH . C 3 HOH A 81 2181 56 HOH HOH . C 3 HOH A 82 2182 68 HOH HOH . C 3 HOH A 83 2183 81 HOH HOH . C 3 HOH A 84 2184 103 HOH HOH . C 3 HOH A 85 2185 67 HOH HOH . C 3 HOH A 86 2186 75 HOH HOH . C 3 HOH A 87 2187 95 HOH HOH . C 3 HOH A 88 2188 22 HOH HOH . C 3 HOH A 89 2189 46 HOH HOH . C 3 HOH A 90 2190 37 HOH HOH . C 3 HOH A 91 2191 60 HOH HOH . C 3 HOH A 92 2192 58 HOH HOH . C 3 HOH A 93 2193 48 HOH HOH . C 3 HOH A 94 2194 88 HOH HOH . C 3 HOH A 95 2195 90 HOH HOH . C 3 HOH A 96 2196 59 HOH HOH . C 3 HOH A 97 2197 101 HOH HOH . C 3 HOH A 98 2198 97 HOH HOH . C 3 HOH A 99 2199 76 HOH HOH . C 3 HOH A 100 2200 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 6RR . . . B 2 -30.7 -7.852 -1.039 1 48.6 ? O10 6RR 2001 A 1 HETATM 2 C C15 6RR . . . B 2 -24.599 -7.251 0.692 1 34.68 ? C15 6RR 2001 A 1 HETATM 3 C C14 6RR . . . B 2 -25.966 -6.835 0.671 1 27.08 ? C14 6RR 2001 A 1 HETATM 4 C C12 6RR . . . B 2 -28.955 -9.71 -1.273 1 44.13 ? C12 6RR 2001 A 1 HETATM 5 C C01 6RR . . . B 2 -24.759 -11.009 0.748 1 31.2 ? C01 6RR 2001 A 1 HETATM 6 C C02 6RR . . . B 2 -25.195 -9.496 0.715 1 34.12 ? C02 6RR 2001 A 1 HETATM 7 C C03 6RR . . . B 2 -26.598 -9.189 0.694 1 33.46 ? C03 6RR 2001 A 1 HETATM 8 N N04 6RR . . . B 2 -27.608 -10.268 0.686 1 29.25 ? N04 6RR 2001 A 1 HETATM 9 C C05 6RR . . . B 2 -28.953 -9.919 0.23 1 33.94 ? C05 6RR 2001 A 1 HETATM 10 C C06 6RR . . . B 2 -30.047 -11.025 0.709 1 33.02 ? C06 6RR 2001 A 1 HETATM 11 C C07 6RR . . . B 2 -31.375 -11.212 -0.221 1 47.68 ? C07 6RR 2001 A 1 HETATM 12 C C08 6RR . . . B 2 -31.706 -10.149 -1.278 1 42.74 ? C08 6RR 2001 A 1 HETATM 13 S S09 6RR . . . B 2 -30.467 -9.099 -1.722 1 46.39 ? S09 6RR 2001 A 1 HETATM 14 O O11 6RR . . . B 2 -30.471 -8.899 -3.137 1 45.51 ? O11 6RR 2001 A 1 HETATM 15 C C13 6RR . . . B 2 -26.978 -7.811 0.67 1 34.07 ? C13 6RR 2001 A 1 HETATM 16 N N16 6RR . . . B 2 -24.282 -8.56 0.712 1 34.81 ? N16 6RR 2001 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #