data_5L8X
#
_model_server_result.job_id            5R7AI6vwf-muMhjo982wwg 
_model_server_result.datetime_utc      '2024-11-05 01:23:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l8x 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
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_entry.id    5L8X 
#
_exptl.entry_id    5L8X 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.98 
_cell.angle_gamma         90 
_cell.entry_id            5L8X 
_cell.length_a            64.69 
_cell.length_b            37.03 
_cell.length_c            65.16 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5L8X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
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_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 251 n n 
C1 O2 MLT sing 252 n n 
C1 C2 MLT sing 253 n n 
C2 O3 MLT sing 254 n n 
C2 C3 MLT sing 255 n n 
C2 H2 MLT sing 256 n n 
O3 HO3 MLT sing 257 n n 
C3 C4 MLT sing 258 n n 
C3 H31 MLT sing 259 n n 
C3 H32 MLT sing 260 n n 
C4 O4 MLT doub 261 n n 
C4 O5 MLT sing 262 n n 
O5 HO5 MLT sing 263 n n 
O2 H6 MLT sing 264 n n 
#
_atom_sites.entry_id                     5L8X 
_atom_sites.fract_transf_matrix[1][1]    0.015458 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000534 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015356 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LMR A 1 201 1 LMR MLT . 
D 4 MLT B 1 201 1 MLT MLT . 
E 5 HOH A 1 301 5 HOH HOH . 
E 5 HOH A 2 302 64 HOH HOH . 
E 5 HOH A 3 303 66 HOH HOH . 
E 5 HOH A 4 304 32 HOH HOH . 
E 5 HOH A 5 305 53 HOH HOH . 
E 5 HOH A 6 306 47 HOH HOH . 
E 5 HOH A 7 307 75 HOH HOH . 
E 5 HOH A 8 308 100 HOH HOH . 
E 5 HOH A 9 309 4 HOH HOH . 
E 5 HOH A 10 310 12 HOH HOH . 
E 5 HOH A 11 311 15 HOH HOH . 
E 5 HOH A 12 312 63 HOH HOH . 
E 5 HOH A 13 313 33 HOH HOH . 
E 5 HOH A 14 314 6 HOH HOH . 
E 5 HOH A 15 315 48 HOH HOH . 
E 5 HOH A 16 316 59 HOH HOH . 
E 5 HOH A 17 317 13 HOH HOH . 
E 5 HOH A 18 318 37 HOH HOH . 
E 5 HOH A 19 319 74 HOH HOH . 
E 5 HOH A 20 320 14 HOH HOH . 
E 5 HOH A 21 321 9 HOH HOH . 
E 5 HOH A 22 322 7 HOH HOH . 
E 5 HOH A 23 323 99 HOH HOH . 
E 5 HOH A 24 324 76 HOH HOH . 
E 5 HOH A 25 325 46 HOH HOH . 
E 5 HOH A 26 326 2 HOH HOH . 
E 5 HOH A 27 327 85 HOH HOH . 
E 5 HOH A 28 328 42 HOH HOH . 
E 5 HOH A 29 329 19 HOH HOH . 
E 5 HOH A 30 330 1 HOH HOH . 
E 5 HOH A 31 331 60 HOH HOH . 
E 5 HOH A 32 332 97 HOH HOH . 
E 5 HOH A 33 333 41 HOH HOH . 
E 5 HOH A 34 334 38 HOH HOH . 
E 5 HOH A 35 335 18 HOH HOH . 
E 5 HOH A 36 336 3 HOH HOH . 
E 5 HOH A 37 337 52 HOH HOH . 
E 5 HOH A 38 338 90 HOH HOH . 
E 5 HOH A 39 339 95 HOH HOH . 
E 5 HOH A 40 340 17 HOH HOH . 
E 5 HOH A 41 341 80 HOH HOH . 
E 5 HOH A 42 342 88 HOH HOH . 
E 5 HOH A 43 343 86 HOH HOH . 
E 5 HOH A 44 344 40 HOH HOH . 
E 5 HOH A 45 345 91 HOH HOH . 
E 5 HOH A 46 346 89 HOH HOH . 
E 5 HOH A 47 347 94 HOH HOH . 
E 5 HOH A 48 348 55 HOH HOH . 
E 5 HOH A 49 349 71 HOH HOH . 
E 5 HOH A 50 350 72 HOH HOH . 
E 5 HOH A 51 351 8 HOH HOH . 
E 5 HOH A 52 352 10 HOH HOH . 
F 5 HOH B 1 301 82 HOH HOH . 
F 5 HOH B 2 302 57 HOH HOH . 
F 5 HOH B 3 303 34 HOH HOH . 
F 5 HOH B 4 304 51 HOH HOH . 
F 5 HOH B 5 305 61 HOH HOH . 
F 5 HOH B 6 306 65 HOH HOH . 
F 5 HOH B 7 307 56 HOH HOH . 
F 5 HOH B 8 308 92 HOH HOH . 
F 5 HOH B 9 309 23 HOH HOH . 
F 5 HOH B 10 310 36 HOH HOH . 
F 5 HOH B 11 311 84 HOH HOH . 
F 5 HOH B 12 312 73 HOH HOH . 
F 5 HOH B 13 313 16 HOH HOH . 
F 5 HOH B 14 314 31 HOH HOH . 
F 5 HOH B 15 315 30 HOH HOH . 
F 5 HOH B 16 316 77 HOH HOH . 
F 5 HOH B 17 317 26 HOH HOH . 
F 5 HOH B 18 318 21 HOH HOH . 
F 5 HOH B 19 319 39 HOH HOH . 
F 5 HOH B 20 320 27 HOH HOH . 
F 5 HOH B 21 321 87 HOH HOH . 
F 5 HOH B 22 322 11 HOH HOH . 
F 5 HOH B 23 323 35 HOH HOH . 
F 5 HOH B 24 324 70 HOH HOH . 
F 5 HOH B 25 325 58 HOH HOH . 
F 5 HOH B 26 326 102 HOH HOH . 
F 5 HOH B 27 327 98 HOH HOH . 
F 5 HOH B 28 328 96 HOH HOH . 
F 5 HOH B 29 329 20 HOH HOH . 
F 5 HOH B 30 330 29 HOH HOH . 
F 5 HOH B 31 331 54 HOH HOH . 
F 5 HOH B 32 332 62 HOH HOH . 
F 5 HOH B 33 333 50 HOH HOH . 
F 5 HOH B 34 334 45 HOH HOH . 
F 5 HOH B 35 335 78 HOH HOH . 
F 5 HOH B 36 336 83 HOH HOH . 
F 5 HOH B 37 337 68 HOH HOH . 
F 5 HOH B 38 338 93 HOH HOH . 
F 5 HOH B 39 339 44 HOH HOH . 
F 5 HOH B 40 340 79 HOH HOH . 
F 5 HOH B 41 341 67 HOH HOH . 
F 5 HOH B 42 342 43 HOH HOH . 
F 5 HOH B 43 343 69 HOH HOH . 
F 5 HOH B 44 344 81 HOH HOH . 
F 5 HOH B 45 345 101 HOH HOH . 
F 5 HOH B 46 346 49 HOH HOH . 
F 5 HOH B 47 347 22 HOH HOH . 
F 5 HOH B 48 348 24 HOH HOH . 
F 5 HOH B 49 349 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . . . D 4 -7.642 -13.643 -12.667 1 41.93 ? C1 MLT 201 B 1 
HETATM 2 O O1 MLT . . . D 4 -8.786 -14.179 -12.608 1 29.35 ? O1 MLT 201 B 1 
HETATM 3 O O2 MLT . . . D 4 -7.111 -13.139 -11.64 1 22.9 ? O2 MLT 201 B 1 
HETATM 4 C C2 MLT . . . D 4 -6.871 -13.594 -13.958 1 50.93 ? C2 MLT 201 B 1 
HETATM 5 O O3 MLT . . . D 4 -6.737 -12.248 -14.358 1 63.8 ? O3 MLT 201 B 1 
HETATM 6 C C3 MLT . . . D 4 -7.542 -14.418 -15.056 1 42.94 ? C3 MLT 201 B 1 
HETATM 7 C C4 MLT . . . D 4 -7.125 -13.917 -16.423 1 48.98 ? C4 MLT 201 B 1 
HETATM 8 O O4 MLT . . . D 4 -6.267 -14.534 -17.086 1 60.02 ? O4 MLT 201 B 1 
HETATM 9 O O5 MLT . . . D 4 -7.634 -12.89 -16.921 1 42.97 ? O5 MLT 201 B 1 
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_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
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