data_5L90 # _model_server_result.job_id iq2oV1cFxtto6-Fj3OjGsQ _model_server_result.datetime_utc '2024-12-01 12:21:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5L90 # _exptl.entry_id 5L90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5L90 _cell.length_a 121.288 _cell.length_b 121.288 _cell.length_c 144.161 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 352 A CYS 352 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 B SG CYS 352 B CYS 352 1_555 D FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5L90 _atom_sites.fract_transf_matrix[1][1] 0.008245 _atom_sites.fract_transf_matrix[1][2] 0.00476 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 2 HEM B 1 501 501 HEM HEM . E 3 HOH A 1 601 604 HOH HOH . E 3 HOH A 2 602 606 HOH HOH . E 3 HOH A 3 603 602 HOH HOH . E 3 HOH A 4 604 603 HOH HOH . E 3 HOH A 5 605 600 HOH HOH . E 3 HOH A 6 606 605 HOH HOH . E 3 HOH A 7 607 601 HOH HOH . F 3 HOH B 1 600 600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 24.062 70.746 51.768 1 45.34 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 21.227 67.486 53.994 1 41.31 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 17.296 69.878 52.434 1 43.07 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 20.134 72.574 49.563 1 45.86 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 23.652 69.697 52.548 1 42.78 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 24.507 68.888 53.384 1 42.86 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 23.705 67.978 53.949 1 43.12 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 22.336 68.215 53.552 1 45.13 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 24.093 66.852 54.893 1 39.36 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 26.055 68.959 53.497 1 42.31 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 26.633 68.289 52.252 1 44.05 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 28.113 68.185 52.267 1 42.32 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 28.817 68.795 53.106 1 39.55 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 28.546 67.5 51.318 1 51.64 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 19.892 67.885 53.849 1 43.84 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 18.721 67.34 54.562 1 42.49 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 17.647 68 54.093 1 37.31 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 18.098 68.985 53.125 1 40.53 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 18.797 66.221 55.67 1 40.9 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 16.16 67.89 54.478 1 38.81 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 15.677 67.256 55.559 1 41.65 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 17.716 70.846 51.547 1 47.78 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 16.858 71.787 50.84 1 50.84 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 17.69 72.54 50.067 1 47.13 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 19.025 72.066 50.21 1 45.12 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 15.316 71.848 51.127 1 43.68 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 17.426 73.702 49.093 1 50.34 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 16.198 73.99 48.713 1 49.17 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 21.448 72.311 49.897 1 46.36 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 22.619 72.893 49.298 1 44.84 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 23.71 72.401 49.92 1 48.1 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 23.248 71.469 50.931 1 46.92 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 22.612 73.892 48.147 1 48.08 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 25.209 72.682 49.599 1 43.16 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 25.851 73.711 50.529 1 42.94 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 27.316 73.869 50.224 1 43.15 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 27.808 75.016 50.458 1 39.82 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 27.965 72.877 49.756 1 43.24 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 22.36 69.278 52.692 1 43.1 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 19.456 68.866 52.98 1 44.65 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 19.007 71.033 51.116 1 49.53 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 21.87 71.452 50.903 1 48.47 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 20.639 70.328 52.167 1 35.76 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #