data_5L92 # _model_server_result.job_id I_uC07rLKskF99AvwYzjcQ _model_server_result.datetime_utc '2024-10-14 00:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5L92 # _exptl.entry_id 5L92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CORTICOSTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.42 _cell.angle_gamma 90 _cell.entry_id 5L92 _cell.length_a 60.495 _cell.length_b 135.701 _cell.length_c 61.567 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 352 A CYS 352 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D O1 C0R . A C0R 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc3 B SG CYS 352 B CYS 352 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'C21 H30 O4' _chem_comp.formula_weight 346.461 _chem_comp.id C0R _chem_comp.mon_nstd_flag . _chem_comp.name CORTICOSTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (11-BETA)-11,21-DIHYDROXY-PREGN-4-ENE-3,20-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C0R sing 70 n n C1 C10 C0R sing 71 n n C1 H11A C0R sing 72 n n C1 H12 C0R sing 73 n n C2 C3 C0R sing 74 n n C2 H21 C0R sing 75 n n C2 H22 C0R sing 76 n n C3 C4 C0R sing 77 n n C3 O1 C0R doub 78 n n C4 C5 C0R doub 79 n n C4 H4 C0R sing 80 n n C5 C6 C0R sing 81 n n C5 C10 C0R sing 82 n n C6 C7 C0R sing 83 n n C6 H61 C0R sing 84 n n C6 H62 C0R sing 85 n n C7 C8 C0R sing 86 n n C7 H71 C0R sing 87 n n C7 H72 C0R sing 88 n n C8 C9 C0R sing 89 n n C8 C14 C0R sing 90 n n C8 H8 C0R sing 91 n n C9 C10 C0R sing 92 n n C9 C11 C0R sing 93 n n C9 H9 C0R sing 94 n n C10 C19 C0R sing 95 n n C11 C12 C0R sing 96 n n C11 O2 C0R sing 97 n n C11 H11 C0R sing 98 n n C12 C13 C0R sing 99 n n C12 H121 C0R sing 100 n n C12 H122 C0R sing 101 n n C13 C14 C0R sing 102 n n C13 C17 C0R sing 103 n n C13 C18 C0R sing 104 n n C14 C15 C0R sing 105 n n C14 H14 C0R sing 106 n n C15 C16 C0R sing 107 n n C15 H151 C0R sing 108 n n C15 H152 C0R sing 109 n n C16 C17 C0R sing 110 n n C16 H161 C0R sing 111 n n C16 H162 C0R sing 112 n n C17 C20 C0R sing 113 n n C17 H17 C0R sing 114 n n C18 H181 C0R sing 115 n n C18 H182 C0R sing 116 n n C18 H183 C0R sing 117 n n C19 H191 C0R sing 118 n n C19 H192 C0R sing 119 n n C19 H193 C0R sing 120 n n C20 C21 C0R sing 121 n n C20 O3 C0R doub 122 n n C21 O4 C0R sing 123 n n C21 H211 C0R sing 124 n n C21 H212 C0R sing 125 n n O2 HO2 C0R sing 126 n n O4 HO4 C0R sing 127 n n # _atom_sites.entry_id 5L92 _atom_sites.fract_transf_matrix[1][1] 0.01653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007505 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 C0R A 1 502 503 C0R C0R . E 4 MLA A 1 503 504 MLA MLA . F 2 HEM B 1 501 501 HEM HEM . G 5 HOH A 1 601 624 HOH HOH . G 5 HOH A 2 602 655 HOH HOH . G 5 HOH A 3 603 645 HOH HOH . G 5 HOH A 4 604 631 HOH HOH . G 5 HOH A 5 605 627 HOH HOH . G 5 HOH A 6 606 605 HOH HOH . G 5 HOH A 7 607 654 HOH HOH . G 5 HOH A 8 608 647 HOH HOH . G 5 HOH A 9 609 604 HOH HOH . G 5 HOH A 10 610 618 HOH HOH . G 5 HOH A 11 611 616 HOH HOH . G 5 HOH A 12 612 660 HOH HOH . G 5 HOH A 13 613 626 HOH HOH . G 5 HOH A 14 614 612 HOH HOH . G 5 HOH A 15 615 658 HOH HOH . G 5 HOH A 16 616 650 HOH HOH . G 5 HOH A 17 617 643 HOH HOH . G 5 HOH A 18 618 644 HOH HOH . G 5 HOH A 19 619 628 HOH HOH . G 5 HOH A 20 620 639 HOH HOH . G 5 HOH A 21 621 661 HOH HOH . G 5 HOH A 22 622 600 HOH HOH . G 5 HOH A 23 623 625 HOH HOH . G 5 HOH A 24 624 662 HOH HOH . G 5 HOH A 25 625 651 HOH HOH . G 5 HOH A 26 626 632 HOH HOH . G 5 HOH A 27 627 634 HOH HOH . G 5 HOH A 28 628 606 HOH HOH . G 5 HOH A 29 629 610 HOH HOH . G 5 HOH A 30 630 613 HOH HOH . G 5 HOH A 31 631 617 HOH HOH . G 5 HOH A 32 632 621 HOH HOH . G 5 HOH A 33 633 629 HOH HOH . G 5 HOH A 34 634 607 HOH HOH . G 5 HOH A 35 635 622 HOH HOH . G 5 HOH A 36 636 615 HOH HOH . G 5 HOH A 37 637 601 HOH HOH . G 5 HOH A 38 638 608 HOH HOH . G 5 HOH A 39 639 640 HOH HOH . G 5 HOH A 40 640 653 HOH HOH . G 5 HOH A 41 641 649 HOH HOH . G 5 HOH A 42 642 635 HOH HOH . G 5 HOH A 43 643 620 HOH HOH . G 5 HOH A 44 644 646 HOH HOH . G 5 HOH A 45 645 602 HOH HOH . G 5 HOH A 46 646 609 HOH HOH . G 5 HOH A 47 647 659 HOH HOH . G 5 HOH A 48 648 637 HOH HOH . G 5 HOH A 49 649 664 HOH HOH . G 5 HOH A 50 650 623 HOH HOH . G 5 HOH A 51 651 603 HOH HOH . G 5 HOH A 52 652 638 HOH HOH . G 5 HOH A 53 653 630 HOH HOH . G 5 HOH A 54 654 611 HOH HOH . G 5 HOH A 55 655 663 HOH HOH . G 5 HOH A 56 656 641 HOH HOH . G 5 HOH A 57 657 652 HOH HOH . G 5 HOH A 58 658 619 HOH HOH . G 5 HOH A 59 659 648 HOH HOH . G 5 HOH A 60 660 614 HOH HOH . G 5 HOH A 61 661 656 HOH HOH . G 5 HOH A 62 662 633 HOH HOH . G 5 HOH A 63 663 642 HOH HOH . G 5 HOH A 64 664 657 HOH HOH . G 5 HOH A 65 665 636 HOH HOH . G 5 HOH A 66 666 665 HOH HOH . H 5 HOH B 1 601 649 HOH HOH . H 5 HOH B 2 602 638 HOH HOH . H 5 HOH B 3 603 640 HOH HOH . H 5 HOH B 4 604 628 HOH HOH . H 5 HOH B 5 605 625 HOH HOH . H 5 HOH B 6 606 612 HOH HOH . H 5 HOH B 7 607 652 HOH HOH . H 5 HOH B 8 608 626 HOH HOH . H 5 HOH B 9 609 642 HOH HOH . H 5 HOH B 10 610 627 HOH HOH . H 5 HOH B 11 611 608 HOH HOH . H 5 HOH B 12 612 645 HOH HOH . H 5 HOH B 13 613 620 HOH HOH . H 5 HOH B 14 614 641 HOH HOH . H 5 HOH B 15 615 623 HOH HOH . H 5 HOH B 16 616 602 HOH HOH . H 5 HOH B 17 617 603 HOH HOH . H 5 HOH B 18 618 648 HOH HOH . H 5 HOH B 19 619 606 HOH HOH . H 5 HOH B 20 620 643 HOH HOH . H 5 HOH B 21 621 647 HOH HOH . H 5 HOH B 22 622 615 HOH HOH . H 5 HOH B 23 623 611 HOH HOH . H 5 HOH B 24 624 631 HOH HOH . H 5 HOH B 25 625 610 HOH HOH . H 5 HOH B 26 626 616 HOH HOH . H 5 HOH B 27 627 651 HOH HOH . H 5 HOH B 28 628 646 HOH HOH . H 5 HOH B 29 629 634 HOH HOH . H 5 HOH B 30 630 635 HOH HOH . H 5 HOH B 31 631 639 HOH HOH . H 5 HOH B 32 632 637 HOH HOH . H 5 HOH B 33 633 653 HOH HOH . H 5 HOH B 34 634 607 HOH HOH . H 5 HOH B 35 635 605 HOH HOH . H 5 HOH B 36 636 629 HOH HOH . H 5 HOH B 37 637 604 HOH HOH . H 5 HOH B 38 638 654 HOH HOH . H 5 HOH B 39 639 614 HOH HOH . H 5 HOH B 40 640 644 HOH HOH . H 5 HOH B 41 641 600 HOH HOH . H 5 HOH B 42 642 621 HOH HOH . H 5 HOH B 43 643 617 HOH HOH . H 5 HOH B 44 644 613 HOH HOH . H 5 HOH B 45 645 601 HOH HOH . H 5 HOH B 46 646 619 HOH HOH . H 5 HOH B 47 647 630 HOH HOH . H 5 HOH B 48 648 636 HOH HOH . H 5 HOH B 49 649 609 HOH HOH . H 5 HOH B 50 650 618 HOH HOH . H 5 HOH B 51 651 650 HOH HOH . H 5 HOH B 52 652 624 HOH HOH . H 5 HOH B 53 653 632 HOH HOH . H 5 HOH B 54 654 656 HOH HOH . H 5 HOH B 55 655 633 HOH HOH . H 5 HOH B 56 656 655 HOH HOH . H 5 HOH B 57 657 622 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C0R . . . D 3 -29.129 -8.975 18.834 1 33.03 ? C1 C0R 502 A 1 HETATM 2 C C2 C0R . . . D 3 -29.397 -8.787 17.33 1 31.25 ? C2 C0R 502 A 1 HETATM 3 C C3 C0R . . . D 3 -29.304 -7.282 16.8 1 29.4 ? C3 C0R 502 A 1 HETATM 4 C C4 C0R . . . D 3 -28.364 -6.282 17.639 1 34.16 ? C4 C0R 502 A 1 HETATM 5 C C5 C0R . . . D 3 -27.782 -6.76 18.97 1 34.29 ? C5 C0R 502 A 1 HETATM 6 C C6 C0R . . . D 3 -26.806 -5.806 19.774 1 34.55 ? C6 C0R 502 A 1 HETATM 7 C C7 C0R . . . D 3 -27.281 -5.75 21.329 1 37.48 ? C7 C0R 502 A 1 HETATM 8 C C8 C0R . . . D 3 -27.449 -7.138 21.918 1 37.78 ? C8 C0R 502 A 1 HETATM 9 C C9 C0R . . . D 3 -28.394 -8.088 21.064 1 36.67 ? C9 C0R 502 A 1 HETATM 10 C C10 C0R . . . D 3 -28.072 -8.187 19.53 1 35.49 ? C10 C0R 502 A 1 HETATM 11 C C11 C0R . . . D 3 -28.545 -9.492 21.835 1 37.6 ? C11 C0R 502 A 1 HETATM 12 C C12 C0R . . . D 3 -29.005 -9.268 23.399 1 41.16 ? C12 C0R 502 A 1 HETATM 13 C C13 C0R . . . D 3 -28.086 -8.37 24.199 1 41.67 ? C13 C0R 502 A 1 HETATM 14 C C14 C0R . . . D 3 -27.913 -6.96 23.377 1 40.55 ? C14 C0R 502 A 1 HETATM 15 C C15 C0R . . . D 3 -27.09 -6.254 24.149 1 40.87 ? C15 C0R 502 A 1 HETATM 16 C C16 C0R . . . D 3 -27.595 -6.589 25.648 1 40.73 ? C16 C0R 502 A 1 HETATM 17 C C17 C0R . . . D 3 -28.59 -7.943 25.384 1 45.39 ? C17 C0R 502 A 1 HETATM 18 C C18 C0R . . . D 3 -26.698 -9.06 24.419 1 40.23 ? C18 C0R 502 A 1 HETATM 19 C C19 C0R . . . D 3 -26.728 -8.905 19.267 1 34.41 ? C19 C0R 502 A 1 HETATM 20 C C20 C0R . . . D 3 -28.53 -8.929 26.584 1 51.02 ? C20 C0R 502 A 1 HETATM 21 C C21 C0R . . . D 3 -29.789 -9.61 27.142 1 53.95 ? C21 C0R 502 A 1 HETATM 22 O O1 C0R . . . D 3 -29.786 -6.837 15.764 1 29.12 ? O1 C0R 502 A 1 HETATM 23 O O2 C0R . . . D 3 -27.402 -10.169 21.8 1 36.62 ? O2 C0R 502 A 1 HETATM 24 O O3 C0R . . . D 3 -27.451 -9.169 27.114 1 50.49 ? O3 C0R 502 A 1 HETATM 25 O O4 C0R . . . D 3 -29.351 -10.583 28.086 1 53.69 ? O4 C0R 502 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 472 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #