data_5L92
#
_model_server_result.job_id            bKgbpizMr2whOgRv-_yy0w 
_model_server_result.datetime_utc      '2024-10-14 00:26:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l92 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    5L92 
#
_exptl.entry_id    5L92 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.42 
_cell.angle_gamma         90 
_cell.entry_id            5L92 
_cell.length_a            60.495 
_cell.length_b            135.701 
_cell.length_c            61.567 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L92 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 352 A CYS 352 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc2 C FE HEM . A HEM 501 1_555 D O1 C0R . A C0R 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc3 B SG CYS 352 B CYS 352 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 377 n n 
C1 O1B MLA doub 378 n n 
C1 C2 MLA sing 379 n n 
O1A H1A MLA sing 380 n n 
C2 C3 MLA sing 381 n n 
C2 HC21 MLA sing 382 n n 
C2 HC22 MLA sing 383 n n 
C3 O3A MLA doub 384 n n 
C3 O3B MLA sing 385 n n 
O3B H3B MLA sing 386 n n 
#
_atom_sites.entry_id                     5L92 
_atom_sites.fract_transf_matrix[1][1]    0.01653 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007505 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007369 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017838 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 501 HEM HEM . 
D 3 C0R A 1 502 503 C0R C0R . 
E 4 MLA A 1 503 504 MLA MLA . 
F 2 HEM B 1 501 501 HEM HEM . 
G 5 HOH A 1 601 624 HOH HOH . 
G 5 HOH A 2 602 655 HOH HOH . 
G 5 HOH A 3 603 645 HOH HOH . 
G 5 HOH A 4 604 631 HOH HOH . 
G 5 HOH A 5 605 627 HOH HOH . 
G 5 HOH A 6 606 605 HOH HOH . 
G 5 HOH A 7 607 654 HOH HOH . 
G 5 HOH A 8 608 647 HOH HOH . 
G 5 HOH A 9 609 604 HOH HOH . 
G 5 HOH A 10 610 618 HOH HOH . 
G 5 HOH A 11 611 616 HOH HOH . 
G 5 HOH A 12 612 660 HOH HOH . 
G 5 HOH A 13 613 626 HOH HOH . 
G 5 HOH A 14 614 612 HOH HOH . 
G 5 HOH A 15 615 658 HOH HOH . 
G 5 HOH A 16 616 650 HOH HOH . 
G 5 HOH A 17 617 643 HOH HOH . 
G 5 HOH A 18 618 644 HOH HOH . 
G 5 HOH A 19 619 628 HOH HOH . 
G 5 HOH A 20 620 639 HOH HOH . 
G 5 HOH A 21 621 661 HOH HOH . 
G 5 HOH A 22 622 600 HOH HOH . 
G 5 HOH A 23 623 625 HOH HOH . 
G 5 HOH A 24 624 662 HOH HOH . 
G 5 HOH A 25 625 651 HOH HOH . 
G 5 HOH A 26 626 632 HOH HOH . 
G 5 HOH A 27 627 634 HOH HOH . 
G 5 HOH A 28 628 606 HOH HOH . 
G 5 HOH A 29 629 610 HOH HOH . 
G 5 HOH A 30 630 613 HOH HOH . 
G 5 HOH A 31 631 617 HOH HOH . 
G 5 HOH A 32 632 621 HOH HOH . 
G 5 HOH A 33 633 629 HOH HOH . 
G 5 HOH A 34 634 607 HOH HOH . 
G 5 HOH A 35 635 622 HOH HOH . 
G 5 HOH A 36 636 615 HOH HOH . 
G 5 HOH A 37 637 601 HOH HOH . 
G 5 HOH A 38 638 608 HOH HOH . 
G 5 HOH A 39 639 640 HOH HOH . 
G 5 HOH A 40 640 653 HOH HOH . 
G 5 HOH A 41 641 649 HOH HOH . 
G 5 HOH A 42 642 635 HOH HOH . 
G 5 HOH A 43 643 620 HOH HOH . 
G 5 HOH A 44 644 646 HOH HOH . 
G 5 HOH A 45 645 602 HOH HOH . 
G 5 HOH A 46 646 609 HOH HOH . 
G 5 HOH A 47 647 659 HOH HOH . 
G 5 HOH A 48 648 637 HOH HOH . 
G 5 HOH A 49 649 664 HOH HOH . 
G 5 HOH A 50 650 623 HOH HOH . 
G 5 HOH A 51 651 603 HOH HOH . 
G 5 HOH A 52 652 638 HOH HOH . 
G 5 HOH A 53 653 630 HOH HOH . 
G 5 HOH A 54 654 611 HOH HOH . 
G 5 HOH A 55 655 663 HOH HOH . 
G 5 HOH A 56 656 641 HOH HOH . 
G 5 HOH A 57 657 652 HOH HOH . 
G 5 HOH A 58 658 619 HOH HOH . 
G 5 HOH A 59 659 648 HOH HOH . 
G 5 HOH A 60 660 614 HOH HOH . 
G 5 HOH A 61 661 656 HOH HOH . 
G 5 HOH A 62 662 633 HOH HOH . 
G 5 HOH A 63 663 642 HOH HOH . 
G 5 HOH A 64 664 657 HOH HOH . 
G 5 HOH A 65 665 636 HOH HOH . 
G 5 HOH A 66 666 665 HOH HOH . 
H 5 HOH B 1 601 649 HOH HOH . 
H 5 HOH B 2 602 638 HOH HOH . 
H 5 HOH B 3 603 640 HOH HOH . 
H 5 HOH B 4 604 628 HOH HOH . 
H 5 HOH B 5 605 625 HOH HOH . 
H 5 HOH B 6 606 612 HOH HOH . 
H 5 HOH B 7 607 652 HOH HOH . 
H 5 HOH B 8 608 626 HOH HOH . 
H 5 HOH B 9 609 642 HOH HOH . 
H 5 HOH B 10 610 627 HOH HOH . 
H 5 HOH B 11 611 608 HOH HOH . 
H 5 HOH B 12 612 645 HOH HOH . 
H 5 HOH B 13 613 620 HOH HOH . 
H 5 HOH B 14 614 641 HOH HOH . 
H 5 HOH B 15 615 623 HOH HOH . 
H 5 HOH B 16 616 602 HOH HOH . 
H 5 HOH B 17 617 603 HOH HOH . 
H 5 HOH B 18 618 648 HOH HOH . 
H 5 HOH B 19 619 606 HOH HOH . 
H 5 HOH B 20 620 643 HOH HOH . 
H 5 HOH B 21 621 647 HOH HOH . 
H 5 HOH B 22 622 615 HOH HOH . 
H 5 HOH B 23 623 611 HOH HOH . 
H 5 HOH B 24 624 631 HOH HOH . 
H 5 HOH B 25 625 610 HOH HOH . 
H 5 HOH B 26 626 616 HOH HOH . 
H 5 HOH B 27 627 651 HOH HOH . 
H 5 HOH B 28 628 646 HOH HOH . 
H 5 HOH B 29 629 634 HOH HOH . 
H 5 HOH B 30 630 635 HOH HOH . 
H 5 HOH B 31 631 639 HOH HOH . 
H 5 HOH B 32 632 637 HOH HOH . 
H 5 HOH B 33 633 653 HOH HOH . 
H 5 HOH B 34 634 607 HOH HOH . 
H 5 HOH B 35 635 605 HOH HOH . 
H 5 HOH B 36 636 629 HOH HOH . 
H 5 HOH B 37 637 604 HOH HOH . 
H 5 HOH B 38 638 654 HOH HOH . 
H 5 HOH B 39 639 614 HOH HOH . 
H 5 HOH B 40 640 644 HOH HOH . 
H 5 HOH B 41 641 600 HOH HOH . 
H 5 HOH B 42 642 621 HOH HOH . 
H 5 HOH B 43 643 617 HOH HOH . 
H 5 HOH B 44 644 613 HOH HOH . 
H 5 HOH B 45 645 601 HOH HOH . 
H 5 HOH B 46 646 619 HOH HOH . 
H 5 HOH B 47 647 630 HOH HOH . 
H 5 HOH B 48 648 636 HOH HOH . 
H 5 HOH B 49 649 609 HOH HOH . 
H 5 HOH B 50 650 618 HOH HOH . 
H 5 HOH B 51 651 650 HOH HOH . 
H 5 HOH B 52 652 624 HOH HOH . 
H 5 HOH B 53 653 632 HOH HOH . 
H 5 HOH B 54 654 656 HOH HOH . 
H 5 HOH B 55 655 633 HOH HOH . 
H 5 HOH B 56 656 655 HOH HOH . 
H 5 HOH B 57 657 622 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . E 4 -32.797 -11.617 22.857 1 36.69 ? C1 MLA 503 A 1 
HETATM 2 O O1A MLA . . . E 4 -33.534 -12.551 23.083 1 34.45 ? O1A MLA 503 A 1 
HETATM 3 O O1B MLA . . . E 4 -33.156 -10.658 22.208 1 36.08 ? O1B MLA 503 A 1 
HETATM 4 C C2 MLA . . . E 4 -31.382 -11.598 23.341 1 40.4 ? C2 MLA 503 A 1 
HETATM 5 C C3 MLA . . . E 4 -31.172 -12.529 24.478 1 43.05 ? C3 MLA 503 A 1 
HETATM 6 O O3A MLA . . . E 4 -30.742 -13.649 24.233 1 46.86 ? O3A MLA 503 A 1 
HETATM 7 O O3B MLA . . . E 4 -31.408 -12.137 25.615 1 44.75 ? O3B MLA 503 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#