data_5L9F
#
_model_server_result.job_id            gUTCOj0pROaCk1-MJz5_3A 
_model_server_result.datetime_utc      '2024-11-28 18:59:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5L9F 
#
_exptl.entry_id    5L9F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L9F 
_cell.length_a            49.215 
_cell.length_b            91.088 
_cell.length_c            117.865 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 243 A GLN 240 1_555 A N CME 244 A CME 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CME 244 A CME 241 1_555 A N TRP 245 A TRP 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C GLN 243 B GLN 240 1_555 B N CME 244 B CME 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C CME 244 B CME 241 1_555 B N TRP 245 B TRP 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 C NA NA . A NA 301 1_555 G O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc2 E NA NA . B NA 301 1_555 H O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5L9F 
_atom_sites.fract_transf_matrix[1][1]    0.020319 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008484 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 301 1 NA NA . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 2 NA B 1 301 2 NA NA . 
F 3 SO4 B 1 302 2 SO4 SO4 . 
G 4 HOH A 1 401 18 HOH HOH . 
G 4 HOH A 2 402 32 HOH HOH . 
G 4 HOH A 3 403 22 HOH HOH . 
G 4 HOH A 4 404 38 HOH HOH . 
G 4 HOH A 5 405 40 HOH HOH . 
G 4 HOH A 6 406 67 HOH HOH . 
G 4 HOH A 7 407 2 HOH HOH . 
G 4 HOH A 8 408 10 HOH HOH . 
G 4 HOH A 9 409 25 HOH HOH . 
G 4 HOH A 10 410 46 HOH HOH . 
G 4 HOH A 11 411 8 HOH HOH . 
G 4 HOH A 12 412 6 HOH HOH . 
G 4 HOH A 13 413 15 HOH HOH . 
G 4 HOH A 14 414 49 HOH HOH . 
G 4 HOH A 15 415 76 HOH HOH . 
G 4 HOH A 16 416 48 HOH HOH . 
G 4 HOH A 17 417 74 HOH HOH . 
G 4 HOH A 18 418 56 HOH HOH . 
G 4 HOH A 19 419 71 HOH HOH . 
G 4 HOH A 20 420 73 HOH HOH . 
G 4 HOH A 21 421 58 HOH HOH . 
H 4 HOH B 1 401 43 HOH HOH . 
H 4 HOH B 2 402 54 HOH HOH . 
H 4 HOH B 3 403 33 HOH HOH . 
H 4 HOH B 4 404 53 HOH HOH . 
H 4 HOH B 5 405 3 HOH HOH . 
H 4 HOH B 6 406 42 HOH HOH . 
H 4 HOH B 7 407 27 HOH HOH . 
H 4 HOH B 8 408 20 HOH HOH . 
H 4 HOH B 9 409 7 HOH HOH . 
H 4 HOH B 10 410 17 HOH HOH . 
H 4 HOH B 11 411 28 HOH HOH . 
H 4 HOH B 12 412 9 HOH HOH . 
H 4 HOH B 13 413 16 HOH HOH . 
H 4 HOH B 14 414 30 HOH HOH . 
H 4 HOH B 15 415 31 HOH HOH . 
H 4 HOH B 16 416 12 HOH HOH . 
H 4 HOH B 17 417 26 HOH HOH . 
H 4 HOH B 18 418 51 HOH HOH . 
H 4 HOH B 19 419 44 HOH HOH . 
H 4 HOH B 20 420 69 HOH HOH . 
H 4 HOH B 21 421 21 HOH HOH . 
H 4 HOH B 22 422 63 HOH HOH . 
H 4 HOH B 23 423 59 HOH HOH . 
H 4 HOH B 24 424 23 HOH HOH . 
H 4 HOH B 25 425 60 HOH HOH . 
H 4 HOH B 26 426 65 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               7.256 
_atom_site.Cartn_y               51.468 
_atom_site.Cartn_z               36.372 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#