data_5L9H # _model_server_result.job_id xR-1u0eK8eHfVRV5rTdoow _model_server_result.datetime_utc '2024-11-17 11:02:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 5L9H # _exptl.entry_id 5L9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.05 _cell.angle_gamma 90 _cell.entry_id 5L9H _cell.length_a 112.54 _cell.length_b 115.01 _cell.length_c 68.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1 B,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 115 A HIS 673 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 A NE2 HIS 151 A HIS 709 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A OD2 ASP 152 A ASP 710 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 A OD1 ASP 152 A ASP 710 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 A OD1 ASP 264 A ASP 822 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 C ZN ZN . A ZN 1001 1_555 N O HOH . A HOH 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 D MG MG . A MG 1002 1_555 N O HOH . A HOH 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 N O HOH . A HOH 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 N O HOH . A HOH 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 N O HOH . A HOH 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 N O HOH . A HOH 1186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc12 B NE2 HIS 115 B HIS 673 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc13 B NE2 HIS 151 B HIS 709 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc14 B OD2 ASP 152 B ASP 710 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc15 B OD1 ASP 152 B ASP 710 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc16 B OD1 ASP 264 B ASP 822 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc17 H ZN ZN . B ZN 1001 1_555 O O HOH . B HOH 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc18 H ZN ZN . B ZN 1001 1_555 O O HOH . B HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc19 I MG MG . B MG 1002 1_555 O O HOH . B HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc20 I MG MG . B MG 1002 1_555 O O HOH . B HOH 1136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc21 I MG MG . B MG 1002 1_555 O O HOH . B HOH 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc22 I MG MG . B MG 1002 1_555 O O HOH . B HOH 1156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc23 I MG MG . B MG 1002 1_555 O O HOH . B HOH 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 204 n n C1 C2 GOL sing 205 n n C1 H11 GOL sing 206 n n C1 H12 GOL sing 207 n n O1 HO1 GOL sing 208 n n C2 O2 GOL sing 209 n n C2 C3 GOL sing 210 n n C2 H2 GOL sing 211 n n O2 HO2 GOL sing 212 n n C3 O3 GOL sing 213 n n C3 H31 GOL sing 214 n n C3 H32 GOL sing 215 n n O3 HO3 GOL sing 216 n n # _atom_sites.entry_id 5L9H _atom_sites.fract_transf_matrix[1][1] 0.008886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002725 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 MG A 1 1002 1002 MG MG . E 4 GOL A 1 1003 1003 GOL GOL . F 5 FMT A 1 1004 1004 FMT FMT . G 6 CVL A 1 1005 1005 CVL CVL . H 2 ZN B 1 1001 1001 ZN ZN . I 3 MG B 1 1002 1002 MG MG . J 4 GOL B 1 1003 1003 GOL GOL . K 4 GOL B 1 1004 1004 GOL GOL . L 5 FMT B 1 1005 1005 FMT FMT . M 6 CVL B 1 1006 1006 CVL CVL . N 7 HOH A 1 1101 1096 HOH HOH . N 7 HOH A 2 1102 1079 HOH HOH . N 7 HOH A 3 1103 1048 HOH HOH . N 7 HOH A 4 1104 1095 HOH HOH . N 7 HOH A 5 1105 1021 HOH HOH . N 7 HOH A 6 1106 1069 HOH HOH . N 7 HOH A 7 1107 1088 HOH HOH . N 7 HOH A 8 1108 1028 HOH HOH . N 7 HOH A 9 1109 1059 HOH HOH . N 7 HOH A 10 1110 1064 HOH HOH . N 7 HOH A 11 1111 1089 HOH HOH . N 7 HOH A 12 1112 1022 HOH HOH . N 7 HOH A 13 1113 1074 HOH HOH . N 7 HOH A 14 1114 1061 HOH HOH . N 7 HOH A 15 1115 1010 HOH HOH . N 7 HOH A 16 1116 1008 HOH HOH . N 7 HOH A 17 1117 1043 HOH HOH . N 7 HOH A 18 1118 1031 HOH HOH . N 7 HOH A 19 1119 1035 HOH HOH . N 7 HOH A 20 1120 1080 HOH HOH . N 7 HOH A 21 1121 1015 HOH HOH . N 7 HOH A 22 1122 1019 HOH HOH . N 7 HOH A 23 1123 1024 HOH HOH . N 7 HOH A 24 1124 1020 HOH HOH . N 7 HOH A 25 1125 1026 HOH HOH . N 7 HOH A 26 1126 1027 HOH HOH . N 7 HOH A 27 1127 1012 HOH HOH . N 7 HOH A 28 1128 1030 HOH HOH . N 7 HOH A 29 1129 1037 HOH HOH . N 7 HOH A 30 1130 1071 HOH HOH . N 7 HOH A 31 1131 1007 HOH HOH . N 7 HOH A 32 1132 1032 HOH HOH . N 7 HOH A 33 1133 1040 HOH HOH . N 7 HOH A 34 1134 1056 HOH HOH . N 7 HOH A 35 1135 1033 HOH HOH . N 7 HOH A 36 1136 1039 HOH HOH . N 7 HOH A 37 1137 1082 HOH HOH . N 7 HOH A 38 1138 1016 HOH HOH . N 7 HOH A 39 1139 1025 HOH HOH . N 7 HOH A 40 1140 1050 HOH HOH . N 7 HOH A 41 1141 1066 HOH HOH . N 7 HOH A 42 1142 1014 HOH HOH . N 7 HOH A 43 1143 1044 HOH HOH . N 7 HOH A 44 1144 1011 HOH HOH . N 7 HOH A 45 1145 1084 HOH HOH . N 7 HOH A 46 1146 1041 HOH HOH . N 7 HOH A 47 1147 1067 HOH HOH . N 7 HOH A 48 1148 1023 HOH HOH . N 7 HOH A 49 1149 1006 HOH HOH . N 7 HOH A 50 1150 1091 HOH HOH . N 7 HOH A 51 1151 1078 HOH HOH . N 7 HOH A 52 1152 1072 HOH HOH . N 7 HOH A 53 1153 1058 HOH HOH . N 7 HOH A 54 1154 1049 HOH HOH . N 7 HOH A 55 1155 1060 HOH HOH . N 7 HOH A 56 1156 1017 HOH HOH . N 7 HOH A 57 1157 1090 HOH HOH . N 7 HOH A 58 1158 1047 HOH HOH . N 7 HOH A 59 1159 1034 HOH HOH . N 7 HOH A 60 1160 1053 HOH HOH . N 7 HOH A 61 1161 1093 HOH HOH . N 7 HOH A 62 1162 1054 HOH HOH . N 7 HOH A 63 1163 1029 HOH HOH . N 7 HOH A 64 1164 1086 HOH HOH . N 7 HOH A 65 1165 1076 HOH HOH . N 7 HOH A 66 1166 1075 HOH HOH . N 7 HOH A 67 1167 1013 HOH HOH . N 7 HOH A 68 1168 1009 HOH HOH . N 7 HOH A 69 1169 1087 HOH HOH . N 7 HOH A 70 1170 1055 HOH HOH . N 7 HOH A 71 1171 1065 HOH HOH . N 7 HOH A 72 1172 1068 HOH HOH . N 7 HOH A 73 1173 1038 HOH HOH . N 7 HOH A 74 1174 1042 HOH HOH . N 7 HOH A 75 1175 1052 HOH HOH . N 7 HOH A 76 1176 1092 HOH HOH . N 7 HOH A 77 1177 1085 HOH HOH . N 7 HOH A 78 1178 1018 HOH HOH . N 7 HOH A 79 1179 1083 HOH HOH . N 7 HOH A 80 1180 1062 HOH HOH . N 7 HOH A 81 1181 1077 HOH HOH . N 7 HOH A 82 1182 1057 HOH HOH . N 7 HOH A 83 1183 1036 HOH HOH . N 7 HOH A 84 1184 1046 HOH HOH . N 7 HOH A 85 1185 1063 HOH HOH . N 7 HOH A 86 1186 1045 HOH HOH . N 7 HOH A 87 1187 1051 HOH HOH . N 7 HOH A 88 1188 1081 HOH HOH . N 7 HOH A 89 1189 1094 HOH HOH . N 7 HOH A 90 1190 1073 HOH HOH . N 7 HOH A 91 1191 1070 HOH HOH . O 7 HOH B 1 1101 1040 HOH HOH . O 7 HOH B 2 1102 1043 HOH HOH . O 7 HOH B 3 1103 1036 HOH HOH . O 7 HOH B 4 1104 1039 HOH HOH . O 7 HOH B 5 1105 1012 HOH HOH . O 7 HOH B 6 1106 1082 HOH HOH . O 7 HOH B 7 1107 1031 HOH HOH . O 7 HOH B 8 1108 1023 HOH HOH . O 7 HOH B 9 1109 1017 HOH HOH . O 7 HOH B 10 1110 1009 HOH HOH . O 7 HOH B 11 1111 1093 HOH HOH . O 7 HOH B 12 1112 1018 HOH HOH . O 7 HOH B 13 1113 1025 HOH HOH . O 7 HOH B 14 1114 1079 HOH HOH . O 7 HOH B 15 1115 1085 HOH HOH . O 7 HOH B 16 1116 1057 HOH HOH . O 7 HOH B 17 1117 1016 HOH HOH . O 7 HOH B 18 1118 1091 HOH HOH . O 7 HOH B 19 1119 1067 HOH HOH . O 7 HOH B 20 1120 1053 HOH HOH . O 7 HOH B 21 1121 1013 HOH HOH . O 7 HOH B 22 1122 1029 HOH HOH . O 7 HOH B 23 1123 1055 HOH HOH . O 7 HOH B 24 1124 1060 HOH HOH . O 7 HOH B 25 1125 1042 HOH HOH . O 7 HOH B 26 1126 1065 HOH HOH . O 7 HOH B 27 1127 1021 HOH HOH . O 7 HOH B 28 1128 1044 HOH HOH . O 7 HOH B 29 1129 1020 HOH HOH . O 7 HOH B 30 1130 1056 HOH HOH . O 7 HOH B 31 1131 1035 HOH HOH . O 7 HOH B 32 1132 1028 HOH HOH . O 7 HOH B 33 1133 1049 HOH HOH . O 7 HOH B 34 1134 1086 HOH HOH . O 7 HOH B 35 1135 1037 HOH HOH . O 7 HOH B 36 1136 1058 HOH HOH . O 7 HOH B 37 1137 1054 HOH HOH . O 7 HOH B 38 1138 1080 HOH HOH . O 7 HOH B 39 1139 1047 HOH HOH . O 7 HOH B 40 1140 1061 HOH HOH . O 7 HOH B 41 1141 1052 HOH HOH . O 7 HOH B 42 1142 1033 HOH HOH . O 7 HOH B 43 1143 1022 HOH HOH . O 7 HOH B 44 1144 1027 HOH HOH . O 7 HOH B 45 1145 1034 HOH HOH . O 7 HOH B 46 1146 1041 HOH HOH . O 7 HOH B 47 1147 1073 HOH HOH . O 7 HOH B 48 1148 1071 HOH HOH . O 7 HOH B 49 1149 1059 HOH HOH . O 7 HOH B 50 1150 1015 HOH HOH . O 7 HOH B 51 1151 1074 HOH HOH . O 7 HOH B 52 1152 1076 HOH HOH . O 7 HOH B 53 1153 1066 HOH HOH . O 7 HOH B 54 1154 1026 HOH HOH . O 7 HOH B 55 1155 1072 HOH HOH . O 7 HOH B 56 1156 1014 HOH HOH . O 7 HOH B 57 1157 1032 HOH HOH . O 7 HOH B 58 1158 1084 HOH HOH . O 7 HOH B 59 1159 1011 HOH HOH . O 7 HOH B 60 1160 1024 HOH HOH . O 7 HOH B 61 1161 1064 HOH HOH . O 7 HOH B 62 1162 1083 HOH HOH . O 7 HOH B 63 1163 1030 HOH HOH . O 7 HOH B 64 1164 1089 HOH HOH . O 7 HOH B 65 1165 1045 HOH HOH . O 7 HOH B 66 1166 1063 HOH HOH . O 7 HOH B 67 1167 1069 HOH HOH . O 7 HOH B 68 1168 1038 HOH HOH . O 7 HOH B 69 1169 1050 HOH HOH . O 7 HOH B 70 1170 1078 HOH HOH . O 7 HOH B 71 1171 1068 HOH HOH . O 7 HOH B 72 1172 1090 HOH HOH . O 7 HOH B 73 1173 1007 HOH HOH . O 7 HOH B 74 1174 1088 HOH HOH . O 7 HOH B 75 1175 1051 HOH HOH . O 7 HOH B 76 1176 1075 HOH HOH . O 7 HOH B 77 1177 1062 HOH HOH . O 7 HOH B 78 1178 1048 HOH HOH . O 7 HOH B 79 1179 1019 HOH HOH . O 7 HOH B 80 1180 1077 HOH HOH . O 7 HOH B 81 1181 1081 HOH HOH . O 7 HOH B 82 1182 1092 HOH HOH . O 7 HOH B 83 1183 1087 HOH HOH . O 7 HOH B 84 1184 1008 HOH HOH . O 7 HOH B 85 1185 1046 HOH HOH . O 7 HOH B 86 1186 1070 HOH HOH . O 7 HOH B 87 1187 1095 HOH HOH . O 7 HOH B 88 1188 1094 HOH HOH . O 7 HOH B 89 1189 1010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 127.892 -10.908 15.271 1 58.99 ? C1 GOL 1003 A 1 HETATM 2 O O1 GOL . . . E 4 127.667 -10.223 14.019 1 50.43 ? O1 GOL 1003 A 1 HETATM 3 C C2 GOL . . . E 4 127.053 -10.328 16.399 1 57.53 ? C2 GOL 1003 A 1 HETATM 4 O O2 GOL . . . E 4 125.687 -10.025 15.933 1 57 ? O2 GOL 1003 A 1 HETATM 5 C C3 GOL . . . E 4 127.166 -11.132 17.711 1 65.89 ? C3 GOL 1003 A 1 HETATM 6 O O3 GOL . . . E 4 126.03 -11.029 18.626 1 59.65 ? O3 GOL 1003 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #