data_5L9K
#
_model_server_result.job_id            TBZyU50cs7XlYxuBWm1_ag 
_model_server_result.datetime_utc      '2024-10-11 06:25:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l9k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":203}' 
#
_entry.id    5L9K 
#
_exptl.entry_id    5L9K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.84 
_cell.angle_gamma         90 
_cell.entry_id            5L9K 
_cell.length_a            47.368 
_cell.length_b            96.696 
_cell.length_c            54.353 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L9K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 191 n n 
C1 C2 GOL sing 192 n n 
C1 H11 GOL sing 193 n n 
C1 H12 GOL sing 194 n n 
O1 HO1 GOL sing 195 n n 
C2 O2 GOL sing 196 n n 
C2 C3 GOL sing 197 n n 
C2 H2 GOL sing 198 n n 
O2 HO2 GOL sing 199 n n 
C3 O3 GOL sing 200 n n 
C3 H31 GOL sing 201 n n 
C3 H32 GOL sing 202 n n 
O3 HO3 GOL sing 203 n n 
#
_atom_sites.entry_id                     5L9K 
_atom_sites.fract_transf_matrix[1][1]    0.021111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.010222 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010342 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 201 1193 AR6 AR6 . 
D 3 GOL A 1 202 3 GOL GOL . 
E 2 AR6 B 1 201 1194 AR6 AR6 . 
F 3 GOL B 1 202 1 GOL GOL . 
G 3 GOL B 1 203 2 GOL GOL . 
H 4 HOH A 1 301 174 HOH HOH . 
H 4 HOH A 2 302 102 HOH HOH . 
H 4 HOH A 3 303 11 HOH HOH . 
H 4 HOH A 4 304 116 HOH HOH . 
H 4 HOH A 5 305 165 HOH HOH . 
H 4 HOH A 6 306 92 HOH HOH . 
H 4 HOH A 7 307 82 HOH HOH . 
H 4 HOH A 8 308 193 HOH HOH . 
H 4 HOH A 9 309 164 HOH HOH . 
H 4 HOH A 10 310 17 HOH HOH . 
H 4 HOH A 11 311 69 HOH HOH . 
H 4 HOH A 12 312 79 HOH HOH . 
H 4 HOH A 13 313 81 HOH HOH . 
H 4 HOH A 14 314 119 HOH HOH . 
H 4 HOH A 15 315 2 HOH HOH . 
H 4 HOH A 16 316 9 HOH HOH . 
H 4 HOH A 17 317 56 HOH HOH . 
H 4 HOH A 18 318 184 HOH HOH . 
H 4 HOH A 19 319 206 HOH HOH . 
H 4 HOH A 20 320 151 HOH HOH . 
H 4 HOH A 21 321 65 HOH HOH . 
H 4 HOH A 22 322 50 HOH HOH . 
H 4 HOH A 23 323 204 HOH HOH . 
H 4 HOH A 24 324 3 HOH HOH . 
H 4 HOH A 25 325 6 HOH HOH . 
H 4 HOH A 26 326 140 HOH HOH . 
H 4 HOH A 27 327 120 HOH HOH . 
H 4 HOH A 28 328 53 HOH HOH . 
H 4 HOH A 29 329 57 HOH HOH . 
H 4 HOH A 30 330 59 HOH HOH . 
H 4 HOH A 31 331 121 HOH HOH . 
H 4 HOH A 32 332 40 HOH HOH . 
H 4 HOH A 33 333 32 HOH HOH . 
H 4 HOH A 34 334 51 HOH HOH . 
H 4 HOH A 35 335 152 HOH HOH . 
H 4 HOH A 36 336 90 HOH HOH . 
H 4 HOH A 37 337 68 HOH HOH . 
H 4 HOH A 38 338 8 HOH HOH . 
H 4 HOH A 39 339 10 HOH HOH . 
H 4 HOH A 40 340 89 HOH HOH . 
H 4 HOH A 41 341 136 HOH HOH . 
H 4 HOH A 42 342 186 HOH HOH . 
H 4 HOH A 43 343 196 HOH HOH . 
H 4 HOH A 44 344 30 HOH HOH . 
H 4 HOH A 45 345 66 HOH HOH . 
H 4 HOH A 46 346 55 HOH HOH . 
H 4 HOH A 47 347 36 HOH HOH . 
H 4 HOH A 48 348 45 HOH HOH . 
H 4 HOH A 49 349 154 HOH HOH . 
H 4 HOH A 50 350 187 HOH HOH . 
H 4 HOH A 51 351 72 HOH HOH . 
H 4 HOH A 52 352 85 HOH HOH . 
H 4 HOH A 53 353 100 HOH HOH . 
H 4 HOH A 54 354 12 HOH HOH . 
H 4 HOH A 55 355 179 HOH HOH . 
H 4 HOH A 56 356 71 HOH HOH . 
H 4 HOH A 57 357 197 HOH HOH . 
H 4 HOH A 58 358 199 HOH HOH . 
H 4 HOH A 59 359 104 HOH HOH . 
H 4 HOH A 60 360 5 HOH HOH . 
H 4 HOH A 61 361 80 HOH HOH . 
H 4 HOH A 62 362 4 HOH HOH . 
H 4 HOH A 63 363 178 HOH HOH . 
H 4 HOH A 64 364 42 HOH HOH . 
H 4 HOH A 65 365 54 HOH HOH . 
H 4 HOH A 66 366 7 HOH HOH . 
H 4 HOH A 67 367 183 HOH HOH . 
H 4 HOH A 68 368 101 HOH HOH . 
H 4 HOH A 69 369 162 HOH HOH . 
H 4 HOH A 70 370 58 HOH HOH . 
H 4 HOH A 71 371 24 HOH HOH . 
H 4 HOH A 72 372 176 HOH HOH . 
H 4 HOH A 73 373 94 HOH HOH . 
H 4 HOH A 74 374 88 HOH HOH . 
H 4 HOH A 75 375 250 HOH HOH . 
H 4 HOH A 76 376 48 HOH HOH . 
H 4 HOH A 77 377 143 HOH HOH . 
H 4 HOH A 78 378 249 HOH HOH . 
H 4 HOH A 79 379 77 HOH HOH . 
H 4 HOH A 80 380 87 HOH HOH . 
H 4 HOH A 81 381 200 HOH HOH . 
H 4 HOH A 82 382 33 HOH HOH . 
H 4 HOH A 83 383 15 HOH HOH . 
H 4 HOH A 84 384 180 HOH HOH . 
H 4 HOH A 85 385 167 HOH HOH . 
H 4 HOH A 86 386 153 HOH HOH . 
H 4 HOH A 87 387 38 HOH HOH . 
H 4 HOH A 88 388 177 HOH HOH . 
H 4 HOH A 89 389 16 HOH HOH . 
H 4 HOH A 90 390 95 HOH HOH . 
H 4 HOH A 91 391 202 HOH HOH . 
H 4 HOH A 92 392 181 HOH HOH . 
H 4 HOH A 93 393 62 HOH HOH . 
H 4 HOH A 94 394 103 HOH HOH . 
H 4 HOH A 95 395 1 HOH HOH . 
H 4 HOH A 96 396 78 HOH HOH . 
H 4 HOH A 97 397 203 HOH HOH . 
H 4 HOH A 98 398 194 HOH HOH . 
H 4 HOH A 99 399 74 HOH HOH . 
H 4 HOH A 100 400 75 HOH HOH . 
H 4 HOH A 101 401 166 HOH HOH . 
H 4 HOH A 102 402 191 HOH HOH . 
H 4 HOH A 103 403 156 HOH HOH . 
H 4 HOH A 104 404 96 HOH HOH . 
H 4 HOH A 105 405 182 HOH HOH . 
H 4 HOH A 106 406 106 HOH HOH . 
H 4 HOH A 107 407 173 HOH HOH . 
H 4 HOH A 108 408 76 HOH HOH . 
H 4 HOH A 109 409 84 HOH HOH . 
H 4 HOH A 110 410 108 HOH HOH . 
H 4 HOH A 111 411 109 HOH HOH . 
H 4 HOH A 112 412 205 HOH HOH . 
H 4 HOH A 113 413 198 HOH HOH . 
H 4 HOH A 114 414 86 HOH HOH . 
H 4 HOH A 115 415 201 HOH HOH . 
H 4 HOH A 116 416 97 HOH HOH . 
H 4 HOH A 117 417 99 HOH HOH . 
H 4 HOH A 118 418 169 HOH HOH . 
H 4 HOH A 119 419 139 HOH HOH . 
H 4 HOH A 120 420 105 HOH HOH . 
H 4 HOH A 121 421 98 HOH HOH . 
I 4 HOH B 1 301 190 HOH HOH . 
I 4 HOH B 2 302 172 HOH HOH . 
I 4 HOH B 3 303 145 HOH HOH . 
I 4 HOH B 4 304 112 HOH HOH . 
I 4 HOH B 5 305 189 HOH HOH . 
I 4 HOH B 6 306 22 HOH HOH . 
I 4 HOH B 7 307 246 HOH HOH . 
I 4 HOH B 8 308 146 HOH HOH . 
I 4 HOH B 9 309 238 HOH HOH . 
I 4 HOH B 10 310 19 HOH HOH . 
I 4 HOH B 11 311 18 HOH HOH . 
I 4 HOH B 12 312 158 HOH HOH . 
I 4 HOH B 13 313 211 HOH HOH . 
I 4 HOH B 14 314 149 HOH HOH . 
I 4 HOH B 15 315 239 HOH HOH . 
I 4 HOH B 16 316 14 HOH HOH . 
I 4 HOH B 17 317 134 HOH HOH . 
I 4 HOH B 18 318 111 HOH HOH . 
I 4 HOH B 19 319 63 HOH HOH . 
I 4 HOH B 20 320 25 HOH HOH . 
I 4 HOH B 21 321 188 HOH HOH . 
I 4 HOH B 22 322 70 HOH HOH . 
I 4 HOH B 23 323 175 HOH HOH . 
I 4 HOH B 24 324 241 HOH HOH . 
I 4 HOH B 25 325 240 HOH HOH . 
I 4 HOH B 26 326 242 HOH HOH . 
I 4 HOH B 27 327 220 HOH HOH . 
I 4 HOH B 28 328 31 HOH HOH . 
I 4 HOH B 29 329 67 HOH HOH . 
I 4 HOH B 30 330 93 HOH HOH . 
I 4 HOH B 31 331 217 HOH HOH . 
I 4 HOH B 32 332 144 HOH HOH . 
I 4 HOH B 33 333 64 HOH HOH . 
I 4 HOH B 34 334 29 HOH HOH . 
I 4 HOH B 35 335 215 HOH HOH . 
I 4 HOH B 36 336 52 HOH HOH . 
I 4 HOH B 37 337 247 HOH HOH . 
I 4 HOH B 38 338 142 HOH HOH . 
I 4 HOH B 39 339 21 HOH HOH . 
I 4 HOH B 40 340 219 HOH HOH . 
I 4 HOH B 41 341 39 HOH HOH . 
I 4 HOH B 42 342 244 HOH HOH . 
I 4 HOH B 43 343 225 HOH HOH . 
I 4 HOH B 44 344 83 HOH HOH . 
I 4 HOH B 45 345 107 HOH HOH . 
I 4 HOH B 46 346 126 HOH HOH . 
I 4 HOH B 47 347 236 HOH HOH . 
I 4 HOH B 48 348 28 HOH HOH . 
I 4 HOH B 49 349 195 HOH HOH . 
I 4 HOH B 50 350 163 HOH HOH . 
I 4 HOH B 51 351 232 HOH HOH . 
I 4 HOH B 52 352 91 HOH HOH . 
I 4 HOH B 53 353 147 HOH HOH . 
I 4 HOH B 54 354 168 HOH HOH . 
I 4 HOH B 55 355 135 HOH HOH . 
I 4 HOH B 56 356 37 HOH HOH . 
I 4 HOH B 57 357 118 HOH HOH . 
I 4 HOH B 58 358 251 HOH HOH . 
I 4 HOH B 59 359 212 HOH HOH . 
I 4 HOH B 60 360 46 HOH HOH . 
I 4 HOH B 61 361 171 HOH HOH . 
I 4 HOH B 62 362 27 HOH HOH . 
I 4 HOH B 63 363 192 HOH HOH . 
I 4 HOH B 64 364 160 HOH HOH . 
I 4 HOH B 65 365 252 HOH HOH . 
I 4 HOH B 66 366 222 HOH HOH . 
I 4 HOH B 67 367 185 HOH HOH . 
I 4 HOH B 68 368 23 HOH HOH . 
I 4 HOH B 69 369 122 HOH HOH . 
I 4 HOH B 70 370 207 HOH HOH . 
I 4 HOH B 71 371 26 HOH HOH . 
I 4 HOH B 72 372 13 HOH HOH . 
I 4 HOH B 73 373 44 HOH HOH . 
I 4 HOH B 74 374 110 HOH HOH . 
I 4 HOH B 75 375 235 HOH HOH . 
I 4 HOH B 76 376 221 HOH HOH . 
I 4 HOH B 77 377 243 HOH HOH . 
I 4 HOH B 78 378 34 HOH HOH . 
I 4 HOH B 79 379 216 HOH HOH . 
I 4 HOH B 80 380 231 HOH HOH . 
I 4 HOH B 81 381 113 HOH HOH . 
I 4 HOH B 82 382 128 HOH HOH . 
I 4 HOH B 83 383 159 HOH HOH . 
I 4 HOH B 84 384 129 HOH HOH . 
I 4 HOH B 85 385 127 HOH HOH . 
I 4 HOH B 86 386 138 HOH HOH . 
I 4 HOH B 87 387 115 HOH HOH . 
I 4 HOH B 88 388 60 HOH HOH . 
I 4 HOH B 89 389 148 HOH HOH . 
I 4 HOH B 90 390 245 HOH HOH . 
I 4 HOH B 91 391 35 HOH HOH . 
I 4 HOH B 92 392 214 HOH HOH . 
I 4 HOH B 93 393 208 HOH HOH . 
I 4 HOH B 94 394 229 HOH HOH . 
I 4 HOH B 95 395 210 HOH HOH . 
I 4 HOH B 96 396 61 HOH HOH . 
I 4 HOH B 97 397 132 HOH HOH . 
I 4 HOH B 98 398 20 HOH HOH . 
I 4 HOH B 99 399 230 HOH HOH . 
I 4 HOH B 100 400 133 HOH HOH . 
I 4 HOH B 101 401 117 HOH HOH . 
I 4 HOH B 102 402 218 HOH HOH . 
I 4 HOH B 103 403 123 HOH HOH . 
I 4 HOH B 104 404 150 HOH HOH . 
I 4 HOH B 105 405 161 HOH HOH . 
I 4 HOH B 106 406 237 HOH HOH . 
I 4 HOH B 107 407 209 HOH HOH . 
I 4 HOH B 108 408 223 HOH HOH . 
I 4 HOH B 109 409 227 HOH HOH . 
I 4 HOH B 110 410 73 HOH HOH . 
I 4 HOH B 111 411 213 HOH HOH . 
I 4 HOH B 112 412 131 HOH HOH . 
I 4 HOH B 113 413 170 HOH HOH . 
I 4 HOH B 114 414 114 HOH HOH . 
I 4 HOH B 115 415 234 HOH HOH . 
I 4 HOH B 116 416 253 HOH HOH . 
I 4 HOH B 117 417 228 HOH HOH . 
I 4 HOH B 118 418 226 HOH HOH . 
I 4 HOH B 119 419 137 HOH HOH . 
I 4 HOH B 120 420 233 HOH HOH . 
I 4 HOH B 121 421 141 HOH HOH . 
I 4 HOH B 122 422 224 HOH HOH . 
I 4 HOH B 123 423 130 HOH HOH . 
I 4 HOH B 124 424 248 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 18.328 14.254 -41.079 1 42.51 ? C1 GOL 203 B 1 
HETATM 2 O O1 GOL . . . G 3 18.522 15.558 -40.465 1 37.35 ? O1 GOL 203 B 1 
HETATM 3 C C2 GOL . . . G 3 16.847 13.937 -41.345 1 42.54 ? C2 GOL 203 B 1 
HETATM 4 O O2 GOL . . . G 3 16.651 13.621 -42.727 1 48.68 ? O2 GOL 203 B 1 
HETATM 5 C C3 GOL . . . G 3 16.287 12.755 -40.546 1 44.24 ? C3 GOL 203 B 1 
HETATM 6 O O3 GOL . . . G 3 16.017 13.076 -39.171 1 39.42 ? O3 GOL 203 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#