data_5L9R # _model_server_result.job_id ed-nA6zriUyKE3m9Pz_wuA _model_server_result.datetime_utc '2024-10-12 15:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5L9R # _exptl.entry_id 5L9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.086 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OXALYLGLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L9R _cell.length_a 71.233 _cell.length_b 71.233 _cell.length_c 48.245 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc4 B MN MN . A MN 501 1_555 C O1 OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 B MN MN . A MN 501 1_555 C O2' OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 B MN MN . A MN 501 1_555 J O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C4 H5 N O5' _chem_comp.formula_weight 147.086 _chem_comp.id OGA _chem_comp.mon_nstd_flag . _chem_comp.name N-OXALYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OGA sing 250 n n C1 O1 OGA doub 251 n n C1 O2 OGA sing 252 n n C2 O2' OGA doub 253 n n C2 N1 OGA sing 254 n n C4 C5 OGA sing 255 n n C4 N1 OGA sing 256 n n C4 H4C1 OGA sing 257 n n C4 H4C2 OGA sing 258 n n C5 O3 OGA sing 259 n n C5 O4 OGA doub 260 n n O2 H2 OGA sing 261 n n O3 H3 OGA sing 262 n n N1 H1 OGA sing 263 n n # _atom_sites.entry_id 5L9R _atom_sites.fract_transf_matrix[1][1] 0.014038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 OGA A 1 502 601 OGA OGA . D 3 OGA A 1 503 602 OGA OGA . E 4 PG4 A 1 504 701 PG4 PG4 . F 5 SO4 A 1 505 801 SO4 SO4 . G 5 SO4 A 1 506 802 SO4 SO4 . H 5 SO4 A 1 507 803 SO4 SO4 . I 6 GOL A 1 508 901 GOL GOL . J 7 HOH A 1 601 1126 HOH HOH . J 7 HOH A 2 602 1066 HOH HOH . J 7 HOH A 3 603 1063 HOH HOH . J 7 HOH A 4 604 1051 HOH HOH . J 7 HOH A 5 605 1056 HOH HOH . J 7 HOH A 6 606 1015 HOH HOH . J 7 HOH A 7 607 1073 HOH HOH . J 7 HOH A 8 608 1117 HOH HOH . J 7 HOH A 9 609 1100 HOH HOH . J 7 HOH A 10 610 1064 HOH HOH . J 7 HOH A 11 611 1136 HOH HOH . J 7 HOH A 12 612 1065 HOH HOH . J 7 HOH A 13 613 1002 HOH HOH . J 7 HOH A 14 614 1131 HOH HOH . J 7 HOH A 15 615 1038 HOH HOH . J 7 HOH A 16 616 1011 HOH HOH . J 7 HOH A 17 617 1092 HOH HOH . J 7 HOH A 18 618 1068 HOH HOH . J 7 HOH A 19 619 1130 HOH HOH . J 7 HOH A 20 620 1138 HOH HOH . J 7 HOH A 21 621 1018 HOH HOH . J 7 HOH A 22 622 1021 HOH HOH . J 7 HOH A 23 623 1019 HOH HOH . J 7 HOH A 24 624 1058 HOH HOH . J 7 HOH A 25 625 1057 HOH HOH . J 7 HOH A 26 626 1003 HOH HOH . J 7 HOH A 27 627 1013 HOH HOH . J 7 HOH A 28 628 1040 HOH HOH . J 7 HOH A 29 629 1008 HOH HOH . J 7 HOH A 30 630 1030 HOH HOH . J 7 HOH A 31 631 1084 HOH HOH . J 7 HOH A 32 632 1039 HOH HOH . J 7 HOH A 33 633 1012 HOH HOH . J 7 HOH A 34 634 1046 HOH HOH . J 7 HOH A 35 635 1069 HOH HOH . J 7 HOH A 36 636 1043 HOH HOH . J 7 HOH A 37 637 1098 HOH HOH . J 7 HOH A 38 638 1076 HOH HOH . J 7 HOH A 39 639 1091 HOH HOH . J 7 HOH A 40 640 1143 HOH HOH . J 7 HOH A 41 641 1115 HOH HOH . J 7 HOH A 42 642 1024 HOH HOH . J 7 HOH A 43 643 1049 HOH HOH . J 7 HOH A 44 644 1055 HOH HOH . J 7 HOH A 45 645 1029 HOH HOH . J 7 HOH A 46 646 1067 HOH HOH . J 7 HOH A 47 647 1001 HOH HOH . J 7 HOH A 48 648 1050 HOH HOH . J 7 HOH A 49 649 1093 HOH HOH . J 7 HOH A 50 650 1060 HOH HOH . J 7 HOH A 51 651 1062 HOH HOH . J 7 HOH A 52 652 1119 HOH HOH . J 7 HOH A 53 653 1007 HOH HOH . J 7 HOH A 54 654 1041 HOH HOH . J 7 HOH A 55 655 1023 HOH HOH . J 7 HOH A 56 656 1036 HOH HOH . J 7 HOH A 57 657 1009 HOH HOH . J 7 HOH A 58 658 1071 HOH HOH . J 7 HOH A 59 659 1033 HOH HOH . J 7 HOH A 60 660 1075 HOH HOH . J 7 HOH A 61 661 1105 HOH HOH . J 7 HOH A 62 662 1010 HOH HOH . J 7 HOH A 63 663 1047 HOH HOH . J 7 HOH A 64 664 1032 HOH HOH . J 7 HOH A 65 665 1004 HOH HOH . J 7 HOH A 66 666 1037 HOH HOH . J 7 HOH A 67 667 1142 HOH HOH . J 7 HOH A 68 668 1020 HOH HOH . J 7 HOH A 69 669 1072 HOH HOH . J 7 HOH A 70 670 1006 HOH HOH . J 7 HOH A 71 671 1028 HOH HOH . J 7 HOH A 72 672 1053 HOH HOH . J 7 HOH A 73 673 1085 HOH HOH . J 7 HOH A 74 674 1088 HOH HOH . J 7 HOH A 75 675 1078 HOH HOH . J 7 HOH A 76 676 1035 HOH HOH . J 7 HOH A 77 677 1089 HOH HOH . J 7 HOH A 78 678 1052 HOH HOH . J 7 HOH A 79 679 1086 HOH HOH . J 7 HOH A 80 680 1031 HOH HOH . J 7 HOH A 81 681 1144 HOH HOH . J 7 HOH A 82 682 1048 HOH HOH . J 7 HOH A 83 683 1070 HOH HOH . J 7 HOH A 84 684 1034 HOH HOH . J 7 HOH A 85 685 1026 HOH HOH . J 7 HOH A 86 686 1014 HOH HOH . J 7 HOH A 87 687 1016 HOH HOH . J 7 HOH A 88 688 1061 HOH HOH . J 7 HOH A 89 689 1005 HOH HOH . J 7 HOH A 90 690 1121 HOH HOH . J 7 HOH A 91 691 1027 HOH HOH . J 7 HOH A 92 692 1112 HOH HOH . J 7 HOH A 93 693 1097 HOH HOH . J 7 HOH A 94 694 1054 HOH HOH . J 7 HOH A 95 695 1114 HOH HOH . J 7 HOH A 96 696 1140 HOH HOH . J 7 HOH A 97 697 1022 HOH HOH . J 7 HOH A 98 698 1113 HOH HOH . J 7 HOH A 99 699 1127 HOH HOH . J 7 HOH A 100 700 1118 HOH HOH . J 7 HOH A 101 701 1025 HOH HOH . J 7 HOH A 102 702 1017 HOH HOH . J 7 HOH A 103 703 1103 HOH HOH . J 7 HOH A 104 704 1133 HOH HOH . J 7 HOH A 105 705 1125 HOH HOH . J 7 HOH A 106 706 1090 HOH HOH . J 7 HOH A 107 707 1087 HOH HOH . J 7 HOH A 108 708 1104 HOH HOH . J 7 HOH A 109 709 1099 HOH HOH . J 7 HOH A 110 710 1128 HOH HOH . J 7 HOH A 111 711 1059 HOH HOH . J 7 HOH A 112 712 1107 HOH HOH . J 7 HOH A 113 713 1106 HOH HOH . J 7 HOH A 114 714 1135 HOH HOH . J 7 HOH A 115 715 1137 HOH HOH . J 7 HOH A 116 716 1132 HOH HOH . J 7 HOH A 117 717 1044 HOH HOH . J 7 HOH A 118 718 1080 HOH HOH . J 7 HOH A 119 719 1077 HOH HOH . J 7 HOH A 120 720 1139 HOH HOH . J 7 HOH A 121 721 1102 HOH HOH . J 7 HOH A 122 722 1123 HOH HOH . J 7 HOH A 123 723 1074 HOH HOH . J 7 HOH A 124 724 1082 HOH HOH . J 7 HOH A 125 725 1116 HOH HOH . J 7 HOH A 126 726 1042 HOH HOH . J 7 HOH A 127 727 1045 HOH HOH . J 7 HOH A 128 728 1079 HOH HOH . J 7 HOH A 129 729 1096 HOH HOH . J 7 HOH A 130 730 1134 HOH HOH . J 7 HOH A 131 731 1094 HOH HOH . J 7 HOH A 132 732 1109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OGA . . . C 3 -59.942 120.971 -6.983 1 25.25 ? C1 OGA 502 A 1 HETATM 2 C C2 OGA . . . C 3 -61.314 120.58 -6.469 1 26.26 ? C2 OGA 502 A 1 HETATM 3 C C4 OGA . . . C 3 -62.849 120.081 -4.658 1 26.01 ? C4 OGA 502 A 1 HETATM 4 C C5 OGA . . . C 3 -63.164 120.477 -3.23 1 28.97 ? C5 OGA 502 A 1 HETATM 5 O O1 OGA . . . C 3 -59.536 120.521 -8.103 1 25.14 ? O1 OGA 502 A 1 HETATM 6 O O2 OGA . . . C 3 -59.271 121.73 -6.261 1 26.77 ? O2 OGA 502 A 1 HETATM 7 O O2' OGA . . . C 3 -62.143 120.029 -7.358 1 26.2 ? O2' OGA 502 A 1 HETATM 8 O O3 OGA . . . C 3 -62.392 121.284 -2.64 1 26.31 ? O3 OGA 502 A 1 HETATM 9 N N1 OGA . . . C 3 -61.687 120.754 -5.175 1 27.84 ? N1 OGA 502 A 1 HETATM 10 O O4 OGA . . . C 3 -64.215 119.997 -2.716 1 25.49 ? O4 OGA 502 A 1 HETATM 11 H H4C1 OGA . . . C 3 -63.615 120.297 -5.222 1 31.21 ? H4C1 OGA 502 A 1 HETATM 12 H H4C2 OGA . . . C 3 -62.695 119.117 -4.691 1 31.21 ? H4C2 OGA 502 A 1 HETATM 13 H H1 OGA . . . C 3 -61.371 121.433 -4.654 1 33.41 ? H1 OGA 502 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 80 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #