data_5L9S
#
_model_server_result.job_id            x53tp3c2SaM0N6UR6x-8BQ 
_model_server_result.datetime_utc      '2025-02-19 22:29:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    5L9S 
#
_exptl.entry_id    5L9S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L9S 
_cell.length_a            48.01 
_cell.length_b            118.45 
_cell.length_c            121.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 85 A CYS 119 1_555 A SG CYS 99 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? 
disulf ? disulf2 A SG CYS 268 A CYS 302 1_555 A SG CYS 273 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
disulf ? disulf3 B SG CYS 268 B CYS 302 1_555 B SG CYS 273 B CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     5L9S 
_atom_sites.fract_transf_matrix[1][1]    0.020829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008442 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 401 1 ACT ACT . 
D 3 EDO B 1 401 1 EDO EDO . 
E 4 HOH A 1 501 15 HOH HOH . 
E 4 HOH A 2 502 21 HOH HOH . 
E 4 HOH A 3 503 6 HOH HOH . 
E 4 HOH A 4 504 54 HOH HOH . 
E 4 HOH A 5 505 59 HOH HOH . 
E 4 HOH A 6 506 4 HOH HOH . 
E 4 HOH A 7 507 140 HOH HOH . 
E 4 HOH A 8 508 95 HOH HOH . 
E 4 HOH A 9 509 7 HOH HOH . 
E 4 HOH A 10 510 120 HOH HOH . 
E 4 HOH A 11 511 123 HOH HOH . 
E 4 HOH A 12 512 161 HOH HOH . 
E 4 HOH A 13 513 125 HOH HOH . 
E 4 HOH A 14 514 13 HOH HOH . 
E 4 HOH A 15 515 64 HOH HOH . 
E 4 HOH A 16 516 149 HOH HOH . 
E 4 HOH A 17 517 82 HOH HOH . 
E 4 HOH A 18 518 12 HOH HOH . 
E 4 HOH A 19 519 94 HOH HOH . 
E 4 HOH A 20 520 43 HOH HOH . 
E 4 HOH A 21 521 2 HOH HOH . 
E 4 HOH A 22 522 34 HOH HOH . 
E 4 HOH A 23 523 93 HOH HOH . 
E 4 HOH A 24 524 158 HOH HOH . 
E 4 HOH A 25 525 66 HOH HOH . 
E 4 HOH A 26 526 10 HOH HOH . 
E 4 HOH A 27 527 147 HOH HOH . 
E 4 HOH A 28 528 122 HOH HOH . 
E 4 HOH A 29 529 144 HOH HOH . 
E 4 HOH A 30 530 11 HOH HOH . 
E 4 HOH A 31 531 152 HOH HOH . 
E 4 HOH A 32 532 146 HOH HOH . 
E 4 HOH A 33 533 71 HOH HOH . 
E 4 HOH A 34 534 17 HOH HOH . 
E 4 HOH A 35 535 145 HOH HOH . 
E 4 HOH A 36 536 47 HOH HOH . 
E 4 HOH A 37 537 154 HOH HOH . 
E 4 HOH A 38 538 159 HOH HOH . 
E 4 HOH A 39 539 121 HOH HOH . 
E 4 HOH A 40 540 87 HOH HOH . 
E 4 HOH A 41 541 167 HOH HOH . 
E 4 HOH A 42 542 1 HOH HOH . 
E 4 HOH A 43 543 116 HOH HOH . 
E 4 HOH A 44 544 85 HOH HOH . 
E 4 HOH A 45 545 150 HOH HOH . 
E 4 HOH A 46 546 136 HOH HOH . 
E 4 HOH A 47 547 164 HOH HOH . 
E 4 HOH A 48 548 155 HOH HOH . 
E 4 HOH A 49 549 165 HOH HOH . 
E 4 HOH A 50 550 166 HOH HOH . 
E 4 HOH A 51 551 109 HOH HOH . 
E 4 HOH A 52 552 160 HOH HOH . 
E 4 HOH A 53 553 168 HOH HOH . 
E 4 HOH A 54 554 163 HOH HOH . 
F 4 HOH B 1 501 52 HOH HOH . 
F 4 HOH B 2 502 132 HOH HOH . 
F 4 HOH B 3 503 138 HOH HOH . 
F 4 HOH B 4 504 29 HOH HOH . 
F 4 HOH B 5 505 22 HOH HOH . 
F 4 HOH B 6 506 28 HOH HOH . 
F 4 HOH B 7 507 24 HOH HOH . 
F 4 HOH B 8 508 111 HOH HOH . 
F 4 HOH B 9 509 20 HOH HOH . 
F 4 HOH B 10 510 99 HOH HOH . 
F 4 HOH B 11 511 25 HOH HOH . 
F 4 HOH B 12 512 131 HOH HOH . 
F 4 HOH B 13 513 61 HOH HOH . 
F 4 HOH B 14 514 55 HOH HOH . 
F 4 HOH B 15 515 89 HOH HOH . 
F 4 HOH B 16 516 137 HOH HOH . 
F 4 HOH B 17 517 58 HOH HOH . 
F 4 HOH B 18 518 98 HOH HOH . 
F 4 HOH B 19 519 139 HOH HOH . 
F 4 HOH B 20 520 9 HOH HOH . 
F 4 HOH B 21 521 36 HOH HOH . 
F 4 HOH B 22 522 68 HOH HOH . 
F 4 HOH B 23 523 56 HOH HOH . 
F 4 HOH B 24 524 26 HOH HOH . 
F 4 HOH B 25 525 39 HOH HOH . 
F 4 HOH B 26 526 18 HOH HOH . 
F 4 HOH B 27 527 91 HOH HOH . 
F 4 HOH B 28 528 84 HOH HOH . 
F 4 HOH B 29 529 83 HOH HOH . 
F 4 HOH B 30 530 128 HOH HOH . 
F 4 HOH B 31 531 133 HOH HOH . 
F 4 HOH B 32 532 101 HOH HOH . 
F 4 HOH B 33 533 97 HOH HOH . 
F 4 HOH B 34 534 16 HOH HOH . 
F 4 HOH B 35 535 129 HOH HOH . 
F 4 HOH B 36 536 112 HOH HOH . 
F 4 HOH B 37 537 103 HOH HOH . 
F 4 HOH B 38 538 130 HOH HOH . 
F 4 HOH B 39 539 114 HOH HOH . 
F 4 HOH B 40 540 127 HOH HOH . 
F 4 HOH B 41 541 134 HOH HOH . 
F 4 HOH B 42 542 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 22.612 11.793 20.102 1 80.67 ? C1 EDO 401 B 1 
HETATM 2 O O1 EDO . . . D 3 23.154 10.865 21.036 1 79.57 ? O1 EDO 401 B 1 
HETATM 3 C C2 EDO . . . D 3 23.203 13.208 20.348 1 81.3 ? C2 EDO 401 B 1 
HETATM 4 O O2 EDO . . . D 3 22.463 14.156 19.6 1 81.35 ? O2 EDO 401 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#