data_5L9V # _model_server_result.job_id TSDHfIrWyFsbjPW5PD_KkQ _model_server_result.datetime_utc '2024-10-22 21:38:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 5L9V # _exptl.entry_id 5L9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.17 _cell.angle_gamma 90 _cell.entry_id 5L9V _cell.length_a 43.807 _cell.length_b 73.088 _cell.length_c 70.407 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 281 1_555 C SG CYS 18 C CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 143 A CYS 317 1_555 C SG CYS 3 C CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 107 B CYS 281 1_555 D SG CYS 18 D CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 143 B CYS 317 1_555 D SG CYS 3 D CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc4 E MN MN . A MN 501 1_555 F O2 OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 E MN MN . A MN 501 1_555 F O2' OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 E MN MN . A MN 501 1_555 I O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 B NE2 HIS 139 B HIS 313 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc8 B OD1 ASP 141 B ASP 315 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 B NE2 HIS 200 B HIS 374 1_555 G MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc10 G MN MN . B MN 501 1_555 H O2' OGA . B OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc11 G MN MN . B MN 501 1_555 H O1 OGA . B OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc12 G MN MN . B MN 501 1_555 J O HOH . B HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L9V _atom_sites.fract_transf_matrix[1][1] 0.022827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000467 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 501 501 MN MN . F 4 OGA A 1 502 601 OGA OGA . G 3 MN B 1 501 501 MN MN . H 4 OGA B 1 502 601 OGA OGA . I 5 HOH A 1 601 207 HOH HOH . I 5 HOH A 2 602 164 HOH HOH . I 5 HOH A 3 603 168 HOH HOH . I 5 HOH A 4 604 191 HOH HOH . I 5 HOH A 5 605 75 HOH HOH . I 5 HOH A 6 606 59 HOH HOH . I 5 HOH A 7 607 149 HOH HOH . I 5 HOH A 8 608 43 HOH HOH . I 5 HOH A 9 609 52 HOH HOH . I 5 HOH A 10 610 38 HOH HOH . I 5 HOH A 11 611 80 HOH HOH . I 5 HOH A 12 612 81 HOH HOH . I 5 HOH A 13 613 221 HOH HOH . I 5 HOH A 14 614 161 HOH HOH . I 5 HOH A 15 615 163 HOH HOH . I 5 HOH A 16 616 58 HOH HOH . I 5 HOH A 17 617 23 HOH HOH . I 5 HOH A 18 618 57 HOH HOH . I 5 HOH A 19 619 9 HOH HOH . I 5 HOH A 20 620 31 HOH HOH . I 5 HOH A 21 621 77 HOH HOH . I 5 HOH A 22 622 73 HOH HOH . I 5 HOH A 23 623 178 HOH HOH . I 5 HOH A 24 624 74 HOH HOH . I 5 HOH A 25 625 167 HOH HOH . I 5 HOH A 26 626 217 HOH HOH . I 5 HOH A 27 627 26 HOH HOH . I 5 HOH A 28 628 83 HOH HOH . I 5 HOH A 29 629 171 HOH HOH . I 5 HOH A 30 630 213 HOH HOH . I 5 HOH A 31 631 87 HOH HOH . I 5 HOH A 32 632 18 HOH HOH . I 5 HOH A 33 633 193 HOH HOH . I 5 HOH A 34 634 56 HOH HOH . I 5 HOH A 35 635 102 HOH HOH . I 5 HOH A 36 636 218 HOH HOH . I 5 HOH A 37 637 95 HOH HOH . I 5 HOH A 38 638 32 HOH HOH . I 5 HOH A 39 639 79 HOH HOH . I 5 HOH A 40 640 11 HOH HOH . I 5 HOH A 41 641 90 HOH HOH . I 5 HOH A 42 642 67 HOH HOH . I 5 HOH A 43 643 72 HOH HOH . I 5 HOH A 44 644 71 HOH HOH . I 5 HOH A 45 645 16 HOH HOH . I 5 HOH A 46 646 37 HOH HOH . I 5 HOH A 47 647 40 HOH HOH . I 5 HOH A 48 648 30 HOH HOH . I 5 HOH A 49 649 99 HOH HOH . I 5 HOH A 50 650 208 HOH HOH . I 5 HOH A 51 651 210 HOH HOH . I 5 HOH A 52 652 143 HOH HOH . I 5 HOH A 53 653 65 HOH HOH . I 5 HOH A 54 654 63 HOH HOH . I 5 HOH A 55 655 153 HOH HOH . I 5 HOH A 56 656 64 HOH HOH . I 5 HOH A 57 657 157 HOH HOH . I 5 HOH A 58 658 69 HOH HOH . I 5 HOH A 59 659 97 HOH HOH . I 5 HOH A 60 660 70 HOH HOH . I 5 HOH A 61 661 62 HOH HOH . I 5 HOH A 62 662 35 HOH HOH . I 5 HOH A 63 663 54 HOH HOH . I 5 HOH A 64 664 3 HOH HOH . I 5 HOH A 65 665 24 HOH HOH . I 5 HOH A 66 666 60 HOH HOH . I 5 HOH A 67 667 76 HOH HOH . I 5 HOH A 68 668 48 HOH HOH . I 5 HOH A 69 669 46 HOH HOH . I 5 HOH A 70 670 25 HOH HOH . I 5 HOH A 71 671 14 HOH HOH . I 5 HOH A 72 672 68 HOH HOH . I 5 HOH A 73 673 49 HOH HOH . I 5 HOH A 74 674 82 HOH HOH . I 5 HOH A 75 675 96 HOH HOH . I 5 HOH A 76 676 21 HOH HOH . I 5 HOH A 77 677 92 HOH HOH . I 5 HOH A 78 678 183 HOH HOH . I 5 HOH A 79 679 6 HOH HOH . I 5 HOH A 80 680 88 HOH HOH . I 5 HOH A 81 681 222 HOH HOH . I 5 HOH A 82 682 216 HOH HOH . I 5 HOH A 83 683 184 HOH HOH . I 5 HOH A 84 684 215 HOH HOH . I 5 HOH A 85 685 181 HOH HOH . I 5 HOH A 86 686 220 HOH HOH . I 5 HOH A 87 687 66 HOH HOH . I 5 HOH A 88 688 146 HOH HOH . I 5 HOH A 89 689 5 HOH HOH . I 5 HOH A 90 690 47 HOH HOH . I 5 HOH A 91 691 202 HOH HOH . I 5 HOH A 92 692 179 HOH HOH . I 5 HOH A 93 693 195 HOH HOH . I 5 HOH A 94 694 174 HOH HOH . I 5 HOH A 95 695 44 HOH HOH . I 5 HOH A 96 696 212 HOH HOH . I 5 HOH A 97 697 200 HOH HOH . I 5 HOH A 98 698 91 HOH HOH . I 5 HOH A 99 699 93 HOH HOH . I 5 HOH A 100 700 188 HOH HOH . I 5 HOH A 101 701 206 HOH HOH . I 5 HOH A 102 702 180 HOH HOH . I 5 HOH A 103 703 34 HOH HOH . I 5 HOH A 104 704 185 HOH HOH . I 5 HOH A 105 705 194 HOH HOH . I 5 HOH A 106 706 42 HOH HOH . J 5 HOH B 1 601 197 HOH HOH . J 5 HOH B 2 602 2 HOH HOH . J 5 HOH B 3 603 154 HOH HOH . J 5 HOH B 4 604 192 HOH HOH . J 5 HOH B 5 605 189 HOH HOH . J 5 HOH B 6 606 158 HOH HOH . J 5 HOH B 7 607 170 HOH HOH . J 5 HOH B 8 608 152 HOH HOH . J 5 HOH B 9 609 139 HOH HOH . J 5 HOH B 10 610 55 HOH HOH . J 5 HOH B 11 611 182 HOH HOH . J 5 HOH B 12 612 1 HOH HOH . J 5 HOH B 13 613 22 HOH HOH . J 5 HOH B 14 614 105 HOH HOH . J 5 HOH B 15 615 104 HOH HOH . J 5 HOH B 16 616 133 HOH HOH . J 5 HOH B 17 617 201 HOH HOH . J 5 HOH B 18 618 106 HOH HOH . J 5 HOH B 19 619 113 HOH HOH . J 5 HOH B 20 620 173 HOH HOH . J 5 HOH B 21 621 124 HOH HOH . J 5 HOH B 22 622 7 HOH HOH . J 5 HOH B 23 623 165 HOH HOH . J 5 HOH B 24 624 123 HOH HOH . J 5 HOH B 25 625 51 HOH HOH . J 5 HOH B 26 626 209 HOH HOH . J 5 HOH B 27 627 150 HOH HOH . J 5 HOH B 28 628 128 HOH HOH . J 5 HOH B 29 629 116 HOH HOH . J 5 HOH B 30 630 19 HOH HOH . J 5 HOH B 31 631 27 HOH HOH . J 5 HOH B 32 632 115 HOH HOH . J 5 HOH B 33 633 205 HOH HOH . J 5 HOH B 34 634 94 HOH HOH . J 5 HOH B 35 635 151 HOH HOH . J 5 HOH B 36 636 29 HOH HOH . J 5 HOH B 37 637 50 HOH HOH . J 5 HOH B 38 638 108 HOH HOH . J 5 HOH B 39 639 122 HOH HOH . J 5 HOH B 40 640 132 HOH HOH . J 5 HOH B 41 641 84 HOH HOH . J 5 HOH B 42 642 129 HOH HOH . J 5 HOH B 43 643 107 HOH HOH . J 5 HOH B 44 644 118 HOH HOH . J 5 HOH B 45 645 138 HOH HOH . J 5 HOH B 46 646 117 HOH HOH . J 5 HOH B 47 647 111 HOH HOH . J 5 HOH B 48 648 13 HOH HOH . J 5 HOH B 49 649 78 HOH HOH . J 5 HOH B 50 650 110 HOH HOH . J 5 HOH B 51 651 140 HOH HOH . J 5 HOH B 52 652 53 HOH HOH . J 5 HOH B 53 653 120 HOH HOH . J 5 HOH B 54 654 103 HOH HOH . J 5 HOH B 55 655 127 HOH HOH . J 5 HOH B 56 656 169 HOH HOH . J 5 HOH B 57 657 166 HOH HOH . J 5 HOH B 58 658 45 HOH HOH . J 5 HOH B 59 659 114 HOH HOH . J 5 HOH B 60 660 119 HOH HOH . J 5 HOH B 61 661 109 HOH HOH . J 5 HOH B 62 662 223 HOH HOH . J 5 HOH B 63 663 162 HOH HOH . J 5 HOH B 64 664 141 HOH HOH . J 5 HOH B 65 665 33 HOH HOH . J 5 HOH B 66 666 137 HOH HOH . J 5 HOH B 67 667 198 HOH HOH . J 5 HOH B 68 668 15 HOH HOH . J 5 HOH B 69 669 17 HOH HOH . J 5 HOH B 70 670 28 HOH HOH . J 5 HOH B 71 671 134 HOH HOH . J 5 HOH B 72 672 176 HOH HOH . J 5 HOH B 73 673 199 HOH HOH . J 5 HOH B 74 674 142 HOH HOH . J 5 HOH B 75 675 39 HOH HOH . J 5 HOH B 76 676 148 HOH HOH . J 5 HOH B 77 677 136 HOH HOH . J 5 HOH B 78 678 214 HOH HOH . J 5 HOH B 79 679 41 HOH HOH . J 5 HOH B 80 680 125 HOH HOH . J 5 HOH B 81 681 159 HOH HOH . J 5 HOH B 82 682 204 HOH HOH . J 5 HOH B 83 683 4 HOH HOH . J 5 HOH B 84 684 112 HOH HOH . J 5 HOH B 85 685 135 HOH HOH . J 5 HOH B 86 686 175 HOH HOH . J 5 HOH B 87 687 145 HOH HOH . J 5 HOH B 88 688 20 HOH HOH . J 5 HOH B 89 689 86 HOH HOH . J 5 HOH B 90 690 156 HOH HOH . J 5 HOH B 91 691 219 HOH HOH . J 5 HOH B 92 692 203 HOH HOH . J 5 HOH B 93 693 36 HOH HOH . J 5 HOH B 94 694 224 HOH HOH . J 5 HOH B 95 695 187 HOH HOH . J 5 HOH B 96 696 172 HOH HOH . J 5 HOH B 97 697 211 HOH HOH . J 5 HOH B 98 698 186 HOH HOH . K 5 HOH C 1 501 177 HOH HOH . K 5 HOH C 2 502 61 HOH HOH . K 5 HOH C 3 503 196 HOH HOH . K 5 HOH C 4 504 160 HOH HOH . K 5 HOH C 5 505 85 HOH HOH . K 5 HOH C 6 506 100 HOH HOH . K 5 HOH C 7 507 101 HOH HOH . K 5 HOH C 8 508 89 HOH HOH . K 5 HOH C 9 509 8 HOH HOH . K 5 HOH C 10 510 98 HOH HOH . K 5 HOH C 11 511 155 HOH HOH . K 5 HOH C 12 512 190 HOH HOH . K 5 HOH C 13 513 147 HOH HOH . L 5 HOH D 1 501 121 HOH HOH . L 5 HOH D 2 502 131 HOH HOH . L 5 HOH D 3 503 126 HOH HOH . L 5 HOH D 4 504 130 HOH HOH . L 5 HOH D 5 505 10 HOH HOH . L 5 HOH D 6 506 12 HOH HOH . L 5 HOH D 7 507 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.109 _atom_site.Cartn_y 13.954 _atom_site.Cartn_z -8.891 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #