data_5LA4 # _model_server_result.job_id VL2imucdx9T6jLov5lW0Qg _model_server_result.datetime_utc '2024-11-22 21:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5la4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":612}' # _entry.id 5LA4 # _exptl.entry_id 5LA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LA4 _cell.length_a 50.501 _cell.length_b 88.061 _cell.length_c 120.497 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 3 NAG 2 n B NAG 2 B 2 NAG C 6 NAG 2 n B BMA 3 B 3 BMA C 7 BMA 3 n C NAG 1 C 1 NAG C 4 NAG 3 n C FUC 2 C 2 FUC C 5 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 127 1_555 A SG CYS 145 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 403 A CYS 437 1_555 A SG CYS 508 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? covale ? covale1 A ND2 ASN 128 A ASN 162 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 166 A ASN 200 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 204 A ASN 238 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 425 A ASN 459 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 5LA4 _atom_sites.fract_transf_matrix[1][1] 0.019802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 1 NAG NAG . E 4 NAG A 1 602 2 NAG NAG . F 5 EDO A 1 608 1 EDO EDO . G 5 EDO A 1 609 2 EDO EDO . H 5 EDO A 1 610 3 EDO EDO . I 5 EDO A 1 611 4 EDO EDO . J 5 EDO A 1 612 5 EDO EDO . K 6 HOH A 1 701 263 HOH HOH . K 6 HOH A 2 702 207 HOH HOH . K 6 HOH A 3 703 3 HOH HOH . K 6 HOH A 4 704 259 HOH HOH . K 6 HOH A 5 705 45 HOH HOH . K 6 HOH A 6 706 138 HOH HOH . K 6 HOH A 7 707 43 HOH HOH . K 6 HOH A 8 708 241 HOH HOH . K 6 HOH A 9 709 7 HOH HOH . K 6 HOH A 10 710 107 HOH HOH . K 6 HOH A 11 711 101 HOH HOH . K 6 HOH A 12 712 179 HOH HOH . K 6 HOH A 13 713 58 HOH HOH . K 6 HOH A 14 714 42 HOH HOH . K 6 HOH A 15 715 56 HOH HOH . K 6 HOH A 16 716 47 HOH HOH . K 6 HOH A 17 717 249 HOH HOH . K 6 HOH A 18 718 251 HOH HOH . K 6 HOH A 19 719 89 HOH HOH . K 6 HOH A 20 720 180 HOH HOH . K 6 HOH A 21 721 90 HOH HOH . K 6 HOH A 22 722 83 HOH HOH . K 6 HOH A 23 723 98 HOH HOH . K 6 HOH A 24 724 240 HOH HOH . K 6 HOH A 25 725 184 HOH HOH . K 6 HOH A 26 726 235 HOH HOH . K 6 HOH A 27 727 217 HOH HOH . K 6 HOH A 28 728 199 HOH HOH . K 6 HOH A 29 729 32 HOH HOH . K 6 HOH A 30 730 166 HOH HOH . K 6 HOH A 31 731 163 HOH HOH . K 6 HOH A 32 732 13 HOH HOH . K 6 HOH A 33 733 82 HOH HOH . K 6 HOH A 34 734 67 HOH HOH . K 6 HOH A 35 735 254 HOH HOH . K 6 HOH A 36 736 40 HOH HOH . K 6 HOH A 37 737 208 HOH HOH . K 6 HOH A 38 738 80 HOH HOH . K 6 HOH A 39 739 69 HOH HOH . K 6 HOH A 40 740 152 HOH HOH . K 6 HOH A 41 741 53 HOH HOH . K 6 HOH A 42 742 114 HOH HOH . K 6 HOH A 43 743 29 HOH HOH . K 6 HOH A 44 744 169 HOH HOH . K 6 HOH A 45 745 218 HOH HOH . K 6 HOH A 46 746 24 HOH HOH . K 6 HOH A 47 747 23 HOH HOH . K 6 HOH A 48 748 120 HOH HOH . K 6 HOH A 49 749 57 HOH HOH . K 6 HOH A 50 750 68 HOH HOH . K 6 HOH A 51 751 221 HOH HOH . K 6 HOH A 52 752 22 HOH HOH . K 6 HOH A 53 753 147 HOH HOH . K 6 HOH A 54 754 18 HOH HOH . K 6 HOH A 55 755 164 HOH HOH . K 6 HOH A 56 756 244 HOH HOH . K 6 HOH A 57 757 21 HOH HOH . K 6 HOH A 58 758 253 HOH HOH . K 6 HOH A 59 759 150 HOH HOH . K 6 HOH A 60 760 227 HOH HOH . K 6 HOH A 61 761 37 HOH HOH . K 6 HOH A 62 762 12 HOH HOH . K 6 HOH A 63 763 124 HOH HOH . K 6 HOH A 64 764 140 HOH HOH . K 6 HOH A 65 765 225 HOH HOH . K 6 HOH A 66 766 127 HOH HOH . K 6 HOH A 67 767 94 HOH HOH . K 6 HOH A 68 768 154 HOH HOH . K 6 HOH A 69 769 34 HOH HOH . K 6 HOH A 70 770 123 HOH HOH . K 6 HOH A 71 771 33 HOH HOH . K 6 HOH A 72 772 117 HOH HOH . K 6 HOH A 73 773 39 HOH HOH . K 6 HOH A 74 774 19 HOH HOH . K 6 HOH A 75 775 271 HOH HOH . K 6 HOH A 76 776 236 HOH HOH . K 6 HOH A 77 777 71 HOH HOH . K 6 HOH A 78 778 167 HOH HOH . K 6 HOH A 79 779 115 HOH HOH . K 6 HOH A 80 780 92 HOH HOH . K 6 HOH A 81 781 5 HOH HOH . K 6 HOH A 82 782 168 HOH HOH . K 6 HOH A 83 783 27 HOH HOH . K 6 HOH A 84 784 65 HOH HOH . K 6 HOH A 85 785 97 HOH HOH . K 6 HOH A 86 786 51 HOH HOH . K 6 HOH A 87 787 75 HOH HOH . K 6 HOH A 88 788 139 HOH HOH . K 6 HOH A 89 789 11 HOH HOH . K 6 HOH A 90 790 93 HOH HOH . K 6 HOH A 91 791 81 HOH HOH . K 6 HOH A 92 792 52 HOH HOH . K 6 HOH A 93 793 132 HOH HOH . K 6 HOH A 94 794 220 HOH HOH . K 6 HOH A 95 795 54 HOH HOH . K 6 HOH A 96 796 121 HOH HOH . K 6 HOH A 97 797 173 HOH HOH . K 6 HOH A 98 798 96 HOH HOH . K 6 HOH A 99 799 210 HOH HOH . K 6 HOH A 100 800 61 HOH HOH . K 6 HOH A 101 801 41 HOH HOH . K 6 HOH A 102 802 88 HOH HOH . K 6 HOH A 103 803 64 HOH HOH . K 6 HOH A 104 804 170 HOH HOH . K 6 HOH A 105 805 239 HOH HOH . K 6 HOH A 106 806 226 HOH HOH . K 6 HOH A 107 807 79 HOH HOH . K 6 HOH A 108 808 95 HOH HOH . K 6 HOH A 109 809 178 HOH HOH . K 6 HOH A 110 810 182 HOH HOH . K 6 HOH A 111 811 85 HOH HOH . K 6 HOH A 112 812 153 HOH HOH . K 6 HOH A 113 813 142 HOH HOH . K 6 HOH A 114 814 78 HOH HOH . K 6 HOH A 115 815 151 HOH HOH . K 6 HOH A 116 816 201 HOH HOH . K 6 HOH A 117 817 26 HOH HOH . K 6 HOH A 118 818 105 HOH HOH . K 6 HOH A 119 819 185 HOH HOH . K 6 HOH A 120 820 106 HOH HOH . K 6 HOH A 121 821 246 HOH HOH . K 6 HOH A 122 822 50 HOH HOH . K 6 HOH A 123 823 77 HOH HOH . K 6 HOH A 124 824 55 HOH HOH . K 6 HOH A 125 825 17 HOH HOH . K 6 HOH A 126 826 130 HOH HOH . K 6 HOH A 127 827 129 HOH HOH . K 6 HOH A 128 828 86 HOH HOH . K 6 HOH A 129 829 260 HOH HOH . K 6 HOH A 130 830 175 HOH HOH . K 6 HOH A 131 831 149 HOH HOH . K 6 HOH A 132 832 258 HOH HOH . K 6 HOH A 133 833 8 HOH HOH . K 6 HOH A 134 834 126 HOH HOH . K 6 HOH A 135 835 15 HOH HOH . K 6 HOH A 136 836 99 HOH HOH . K 6 HOH A 137 837 9 HOH HOH . K 6 HOH A 138 838 256 HOH HOH . K 6 HOH A 139 839 209 HOH HOH . K 6 HOH A 140 840 116 HOH HOH . K 6 HOH A 141 841 165 HOH HOH . K 6 HOH A 142 842 231 HOH HOH . K 6 HOH A 143 843 177 HOH HOH . K 6 HOH A 144 844 30 HOH HOH . K 6 HOH A 145 845 268 HOH HOH . K 6 HOH A 146 846 46 HOH HOH . K 6 HOH A 147 847 74 HOH HOH . K 6 HOH A 148 848 211 HOH HOH . K 6 HOH A 149 849 6 HOH HOH . K 6 HOH A 150 850 104 HOH HOH . K 6 HOH A 151 851 35 HOH HOH . K 6 HOH A 152 852 158 HOH HOH . K 6 HOH A 153 853 87 HOH HOH . K 6 HOH A 154 854 25 HOH HOH . K 6 HOH A 155 855 146 HOH HOH . K 6 HOH A 156 856 111 HOH HOH . K 6 HOH A 157 857 48 HOH HOH . K 6 HOH A 158 858 66 HOH HOH . K 6 HOH A 159 859 49 HOH HOH . K 6 HOH A 160 860 14 HOH HOH . K 6 HOH A 161 861 186 HOH HOH . K 6 HOH A 162 862 16 HOH HOH . K 6 HOH A 163 863 183 HOH HOH . K 6 HOH A 164 864 72 HOH HOH . K 6 HOH A 165 865 197 HOH HOH . K 6 HOH A 166 866 195 HOH HOH . K 6 HOH A 167 867 10 HOH HOH . K 6 HOH A 168 868 223 HOH HOH . K 6 HOH A 169 869 70 HOH HOH . K 6 HOH A 170 870 229 HOH HOH . K 6 HOH A 171 871 200 HOH HOH . K 6 HOH A 172 872 214 HOH HOH . K 6 HOH A 173 873 243 HOH HOH . K 6 HOH A 174 874 156 HOH HOH . K 6 HOH A 175 875 228 HOH HOH . K 6 HOH A 176 876 133 HOH HOH . K 6 HOH A 177 877 73 HOH HOH . K 6 HOH A 178 878 84 HOH HOH . K 6 HOH A 179 879 44 HOH HOH . K 6 HOH A 180 880 131 HOH HOH . K 6 HOH A 181 881 103 HOH HOH . K 6 HOH A 182 882 272 HOH HOH . K 6 HOH A 183 883 109 HOH HOH . K 6 HOH A 184 884 233 HOH HOH . K 6 HOH A 185 885 128 HOH HOH . K 6 HOH A 186 886 270 HOH HOH . K 6 HOH A 187 887 189 HOH HOH . K 6 HOH A 188 888 38 HOH HOH . K 6 HOH A 189 889 145 HOH HOH . K 6 HOH A 190 890 172 HOH HOH . K 6 HOH A 191 891 204 HOH HOH . K 6 HOH A 192 892 269 HOH HOH . K 6 HOH A 193 893 191 HOH HOH . K 6 HOH A 194 894 28 HOH HOH . K 6 HOH A 195 895 174 HOH HOH . K 6 HOH A 196 896 181 HOH HOH . K 6 HOH A 197 897 102 HOH HOH . K 6 HOH A 198 898 213 HOH HOH . K 6 HOH A 199 899 257 HOH HOH . K 6 HOH A 200 900 232 HOH HOH . K 6 HOH A 201 901 224 HOH HOH . K 6 HOH A 202 902 188 HOH HOH . K 6 HOH A 203 903 134 HOH HOH . K 6 HOH A 204 904 238 HOH HOH . K 6 HOH A 205 905 230 HOH HOH . K 6 HOH A 206 906 248 HOH HOH . K 6 HOH A 207 907 202 HOH HOH . K 6 HOH A 208 908 216 HOH HOH . K 6 HOH A 209 909 245 HOH HOH . K 6 HOH A 210 910 242 HOH HOH . K 6 HOH A 211 911 247 HOH HOH . K 6 HOH A 212 912 266 HOH HOH . K 6 HOH A 213 913 250 HOH HOH . K 6 HOH A 214 914 160 HOH HOH . K 6 HOH A 215 915 176 HOH HOH . K 6 HOH A 216 916 171 HOH HOH . K 6 HOH A 217 917 252 HOH HOH . K 6 HOH A 218 918 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 5 35.661 14.669 41.487 1 74.51 ? C1 EDO 612 A 1 HETATM 2 O O1 EDO . . . J 5 34.767 14.108 42.448 1 71.84 ? O1 EDO 612 A 1 HETATM 3 C C2 EDO . . . J 5 35.736 13.749 40.274 1 72.28 ? C2 EDO 612 A 1 HETATM 4 O O2 EDO . . . J 5 34.425 13.566 39.725 1 71.47 ? O2 EDO 612 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #