data_5LA9
#
_model_server_result.job_id            YWP0xz_s6OEg_YbM0Fkv6w 
_model_server_result.datetime_utc      '2024-10-22 21:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5la9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    5LA9 
#
_exptl.entry_id    5LA9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.086 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OXALYLGLYCINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5LA9 
_cell.length_a            88.467 
_cell.length_b            97.329 
_cell.length_c            71.001 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LA9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,J,L 1 1 
B,D,H,I,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 281 1_555 C SG CYS 18 C CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 140 A CYS 314 1_555 C SG CYS 3 C CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 107 B CYS 281 1_555 D SG CYS 18 D CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 140 B CYS 314 1_555 D SG CYS 3 D CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc4 E MN MN . A MN 501 1_555 F O2 OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 E MN MN . A MN 501 1_555 F O2' OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc6 E MN MN . A MN 501 1_555 J O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc7 B NE2 HIS 139 B HIS 313 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc8 B OD1 ASP 141 B ASP 315 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc9 B NE2 HIS 200 B HIS 374 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc10 H MN MN . B MN 501 1_555 I O1 OGA . B OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc11 H MN MN . B MN 501 1_555 K O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C4 H5 N O5' 
_chem_comp.formula_weight    147.086 
_chem_comp.id                OGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OXALYLGLYCINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OGA sing 237 n n 
C1 O1 OGA doub 238 n n 
C1 O2 OGA sing 239 n n 
C2 O2' OGA doub 240 n n 
C2 N1 OGA sing 241 n n 
C4 C5 OGA sing 242 n n 
C4 N1 OGA sing 243 n n 
C4 H4C1 OGA sing 244 n n 
C4 H4C2 OGA sing 245 n n 
C5 O3 OGA sing 246 n n 
C5 O4 OGA doub 247 n n 
O2 H2 OGA sing 248 n n 
O3 H3 OGA sing 249 n n 
N1 H1 OGA sing 250 n n 
#
_atom_sites.entry_id                     5LA9 
_atom_sites.fract_transf_matrix[1][1]    0.011304 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MN A 1 501 501 MN MN . 
F 4 OGA A 1 502 600 OGA OGA . 
G 5 SO4 A 1 503 701 SO4 SO4 . 
H 3 MN B 1 501 501 MN MN . 
I 4 OGA B 1 502 600 OGA OGA . 
J 6 HOH A 1 601 2 HOH HOH . 
J 6 HOH A 2 602 36 HOH HOH . 
J 6 HOH A 3 603 4 HOH HOH . 
J 6 HOH A 4 604 21 HOH HOH . 
J 6 HOH A 5 605 5 HOH HOH . 
J 6 HOH A 6 606 42 HOH HOH . 
J 6 HOH A 7 607 46 HOH HOH . 
J 6 HOH A 8 608 3 HOH HOH . 
J 6 HOH A 9 609 37 HOH HOH . 
J 6 HOH A 10 610 18 HOH HOH . 
J 6 HOH A 11 611 19 HOH HOH . 
J 6 HOH A 12 612 16 HOH HOH . 
J 6 HOH A 13 613 56 HOH HOH . 
J 6 HOH A 14 614 38 HOH HOH . 
J 6 HOH A 15 615 67 HOH HOH . 
J 6 HOH A 16 616 66 HOH HOH . 
J 6 HOH A 17 617 20 HOH HOH . 
J 6 HOH A 18 618 60 HOH HOH . 
J 6 HOH A 19 619 65 HOH HOH . 
J 6 HOH A 20 620 52 HOH HOH . 
J 6 HOH A 21 621 64 HOH HOH . 
J 6 HOH A 22 622 35 HOH HOH . 
J 6 HOH A 23 623 43 HOH HOH . 
J 6 HOH A 24 624 62 HOH HOH . 
J 6 HOH A 25 625 40 HOH HOH . 
J 6 HOH A 26 626 54 HOH HOH . 
J 6 HOH A 27 627 34 HOH HOH . 
J 6 HOH A 28 628 72 HOH HOH . 
J 6 HOH A 29 629 73 HOH HOH . 
J 6 HOH A 30 630 31 HOH HOH . 
K 6 HOH B 1 601 15 HOH HOH . 
K 6 HOH B 2 602 75 HOH HOH . 
K 6 HOH B 3 603 13 HOH HOH . 
K 6 HOH B 4 604 32 HOH HOH . 
K 6 HOH B 5 605 70 HOH HOH . 
K 6 HOH B 6 606 14 HOH HOH . 
K 6 HOH B 7 607 6 HOH HOH . 
K 6 HOH B 8 608 10 HOH HOH . 
K 6 HOH B 9 609 68 HOH HOH . 
K 6 HOH B 10 610 45 HOH HOH . 
K 6 HOH B 11 611 47 HOH HOH . 
K 6 HOH B 12 612 48 HOH HOH . 
K 6 HOH B 13 613 24 HOH HOH . 
K 6 HOH B 14 614 25 HOH HOH . 
K 6 HOH B 15 615 71 HOH HOH . 
K 6 HOH B 16 616 53 HOH HOH . 
K 6 HOH B 17 617 55 HOH HOH . 
K 6 HOH B 18 618 74 HOH HOH . 
K 6 HOH B 19 619 23 HOH HOH . 
K 6 HOH B 20 620 7 HOH HOH . 
K 6 HOH B 21 621 9 HOH HOH . 
K 6 HOH B 22 622 8 HOH HOH . 
K 6 HOH B 23 623 49 HOH HOH . 
K 6 HOH B 24 624 61 HOH HOH . 
K 6 HOH B 25 625 33 HOH HOH . 
K 6 HOH B 26 626 44 HOH HOH . 
K 6 HOH B 27 627 39 HOH HOH . 
K 6 HOH B 28 628 27 HOH HOH . 
K 6 HOH B 29 629 63 HOH HOH . 
K 6 HOH B 30 630 12 HOH HOH . 
K 6 HOH B 31 631 11 HOH HOH . 
K 6 HOH B 32 632 22 HOH HOH . 
K 6 HOH B 33 633 51 HOH HOH . 
K 6 HOH B 34 634 57 HOH HOH . 
K 6 HOH B 35 635 41 HOH HOH . 
K 6 HOH B 36 636 17 HOH HOH . 
K 6 HOH B 37 637 58 HOH HOH . 
L 6 HOH C 1 501 1 HOH HOH . 
L 6 HOH C 2 502 50 HOH HOH . 
L 6 HOH C 3 503 26 HOH HOH . 
M 6 HOH D 1 501 30 HOH HOH . 
M 6 HOH D 2 502 29 HOH HOH . 
M 6 HOH D 3 503 59 HOH HOH . 
M 6 HOH D 4 504 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OGA . . . F 4 -25.335 19.96 -13.565 1 22.98 ? C1 OGA 502 A 1 
HETATM 2 C C2 OGA . . . F 4 -24.151 20.749 -13.049 1 25.31 ? C2 OGA 502 A 1 
HETATM 3 C C4 OGA . . . F 4 -22.673 22.646 -13.193 1 27.44 ? C4 OGA 502 A 1 
HETATM 4 C C5 OGA . . . F 4 -22.585 23.977 -13.916 1 30.38 ? C5 OGA 502 A 1 
HETATM 5 O O1 OGA . . . F 4 -26.16 20.495 -14.355 1 20.08 ? O1 OGA 502 A 1 
HETATM 6 O O2 OGA . . . F 4 -25.474 18.765 -13.198 1 22.7 ? O2 OGA 502 A 1 
HETATM 7 O O2' OGA . . . F 4 -23.305 20.168 -12.167 1 24.11 ? O2' OGA 502 A 1 
HETATM 8 O O3 OGA . . . F 4 -21.547 24.659 -13.71 1 29.8 ? O3 OGA 502 A 1 
HETATM 9 N N1 OGA . . . F 4 -23.927 22.011 -13.463 1 26.14 ? N1 OGA 502 A 1 
HETATM 10 O O4 OGA . . . F 4 -23.544 24.298 -14.67 1 33.5 ? O4 OGA 502 A 1 
HETATM 11 H H4C1 OGA . . . F 4 -21.947 22.068 -13.493 1 27.44 ? H4C1 OGA 502 A 1 
HETATM 12 H H4C2 OGA . . . F 4 -22.589 22.796 -12.232 1 27.44 ? H4C2 OGA 502 A 1 
HETATM 13 H H1 OGA . . . F 4 -24.442 22.426 -14.091 1 26.14 ? H1 OGA 502 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#